Prupe.3G274400_v2.0.a1

thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012284
Physical Location & Seq
Reverse (-)
25355075 .. 25356216
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G274400.1

Sequence Viewer

Length: 783 bp
ATGAATCTCCCAGATTTTATTGCTGTTTTCTTTCTGTTCCTAATGTGGAATTTTCTGTTATTTGGACATGGAATGGCACATACAGTTACATTTGACATACGCAATAAGTGCCCCTTCCCCATATGGCCAGCAACTGCTCCCAACAATGGACAGCCAGTGATAGCTGATGGCGGCTTCTATCTCCCAGCCGGTCAGACTCGGCGCATTTCCGCCCCTTGGTCATGGAACGGTCGGATTTGGGCCCGAACTGGATGCAACTTTGCCTCAAACTGGAATCCTGCATGTGAAACAGGAGACTGTGATGGGCGCTTAGCATGCAATGGACTAATAGGCACTCCACCAGTGACATTAGTGCAAGTTTCGCTTCAAGGTGACAAAGACAGGCCAAATTTCTATGATGTGAGCTTGGTTGATGGATACAATCTTCCTGTTGCAGTCTTGTCAAAGCCAGTAGCATCTAATTGTGGCATTGGAGGGTGTTTGAAGAATTTGAAAAGTTGGTGCCCAGAAGAACTGAAGGTCTTAAACTCCAAGGGGGAGGTGGTGGCTTGCAAAAGTGCTTGCTTGGCTTTTAACACTGACCCGTTTTGTTGTAGGAATGAGTATGGAACCCCAGCAAAATGCAAGCCAAGTGTGTACTCAAAGATATTCAAAGATGCTTGCCCTTCTTATTATAGCTATGCTTATGATTCACCCCCTCCATTGGTGACTTGCAAGTCAAGTGAGTATGTGATCACCTTTTGTCCTTCAGGCTGGGGCACTGGTGCCTATGCCTCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

261

Amino Acids

28.38

Weight (kDa)

8.1

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 715
AccB1I GGYRCC 2 cut(s) 501, 764
AciI CCGC 2 cut(s) 171, 210
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 3 cut(s) 49, 388, 487
AcuI CTGAAG 2 cut(s) 536, 732
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 4 cut(s) 146, 216, 270, 703
AgsI TTSAA 4 cut(s) 368, 484, 493, 652
AluBI AGCT 3 cut(s) 164, 405, 678
AluI AGCT 3 cut(s) 164, 405, 678
Alw26I GTCTC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 3 cut(s) 125, 240, 383
ApaI GGGCCC 1 cut(s) 244
ApoI RAATTY 3 cut(s) 49, 388, 487
AspLEI GCGC 2 cut(s) 204, 309
AspS9I GGNCC 2 cut(s) 240, 241
AsuHPI GGTGA 4 cut(s) 383, 684, 718, 727
BaeGI GKGCMC 4 cut(s) 113, 244, 506, 761
BalI TGGCCA 1 cut(s) 127
BanI GGYRCC 2 cut(s) 501, 764
BanII GRGCYC 1 cut(s) 244
BccI CCATC 3 cut(s) 161, 296, 407
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BciVI GTATCC 1 cut(s) 410
BclI TGATCA 1 cut(s) 732
BcoDI GTCTC 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 310
BfuI GTATCC 1 cut(s) 410
BisI GCNGC 1 cut(s) 172
BlpI GCTNAGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 240, 241
BmiI GGNNCC 4 cut(s) 242, 503, 610, 766
BmsI GCATC 3 cut(s) 242, 464, 646
Bpu1102I GCTNAGC 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 215, 531
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 216, 270, 703
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 6 cut(s) 155, 253, 275, 341, 449, 766
Bse3DI GCAATG 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 215, 531
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 4 cut(s) 146, 216, 270, 703
BseMI GCAATG 1 cut(s) 325
BseNI ACTGG 6 cut(s) 155, 253, 275, 341, 449, 766
BseSI GKGCMC 4 cut(s) 113, 244, 506, 761
BseYI CCCAGC 3 cut(s) 184, 613, 753
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 127, 242, 385
BshNI GGYRCC 2 cut(s) 501, 764
BsiEI CGRYCG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 4 cut(s) 146, 216, 270, 703
BsmAI GTCTC 1 cut(s) 288
BsnI GGCC 3 cut(s) 127, 242, 385
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 4 cut(s) 113, 244, 506, 761
Bsp143I GATC 1 cut(s) 732
Bsp1720I GCTNAGC 1 cut(s) 310
BspACI CCGC 2 cut(s) 171, 210
BspANI GGCC 3 cut(s) 127, 242, 385
BspLI GGNNCC 4 cut(s) 242, 503, 610, 766
BspT107I GGYRCC 2 cut(s) 501, 764
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 6 cut(s) 155, 253, 275, 341, 449, 766
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 215, 531
BssMI GATC 1 cut(s) 732
BssT1I CCWWGG 2 cut(s) 215, 531
Bst4CI ACNGT 3 cut(s) 85, 230, 299
BstAPI GCANNNNNTGC 1 cut(s) 108
BstC8I GCNNGC 6 cut(s) 129, 316, 550, 562, 626, 661
BstDEI CTNAG 1 cut(s) 310
BstF5I GGATG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 2 cut(s) 204, 309
BstKTI GATC 1 cut(s) 735
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 1 cut(s) 732
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 4 cut(s) 108, 315, 361, 566
BstNSI RCATGY 2 cut(s) 285, 318
BstSLI GKGCMC 4 cut(s) 113, 244, 506, 761
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 3 cut(s) 127, 242, 385
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 4 cut(s) 162, 348, 576, 759
Cac8I GCNNGC 6 cut(s) 129, 316, 550, 562, 626, 661
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 2 cut(s) 204, 309
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 240, 241
Csp6I GTAC 1 cut(s) 637
CviAII CATG 4 cut(s) 68, 222, 282, 315
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 1 cut(s) 310
DpnI GATC 1 cut(s) 734
DpnII GATC 1 cut(s) 732
DrdI GACNNNNNNGTC 1 cut(s) 715
DseDI GACNNNNNNGTC 1 cut(s) 715
EaeI YGGCCR 1 cut(s) 125
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 215, 531
Eco24I GRGCYC 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 536, 732
EcoT14I CCWWGG 2 cut(s) 215, 531
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 2 cut(s) 215, 531
FaeI CATG 4 cut(s) 71, 225, 285, 318
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 348, 380
FatI CATG 4 cut(s) 67, 221, 281, 314
FauNDI CATATG 1 cut(s) 122
FbaI TGATCA 1 cut(s) 732
Fnu4HI GCNGC 1 cut(s) 172
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 172
GlaI GCGC 2 cut(s) 203, 308
GluI GCNGC 1 cut(s) 172
GsaI CCCAGC 3 cut(s) 188, 617, 757
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 3 cut(s) 127, 242, 385
HapII CCGG 1 cut(s) 189
HhaI GCGC 2 cut(s) 204, 309
Hin1II CATG 4 cut(s) 71, 225, 285, 318
Hin6I GCGC 2 cut(s) 202, 307
HinP1I GCGC 2 cut(s) 202, 307
HinfI GANTC 4 cut(s) 4, 196, 274, 689
HpaII CCGG 1 cut(s) 189
HphI GGTGA 4 cut(s) 383, 684, 718, 727
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 2 cut(s) 195, 234
Hpy8I GTNNAC 1 cut(s) 637
HpyAV CCTTC 4 cut(s) 124, 511, 675, 756
HpyCH4III ACNGT 3 cut(s) 85, 230, 299
HpyCH4V TGCA 8 cut(s) 255, 281, 318, 355, 434, 552, 624, 714
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 315, 361, 566
HpyF3I CTNAG 1 cut(s) 310
Hsp92II CATG 4 cut(s) 71, 225, 285, 318
HspAI GCGC 2 cut(s) 202, 307
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 1 cut(s) 732
LmnI GCTCC 1 cut(s) 142
LweI GCATC 3 cut(s) 242, 464, 646
MaeIII GTNAC 4 cut(s) 85, 343, 371, 706
MalI GATC 1 cut(s) 734
MboI GATC 1 cut(s) 732
MboII GAAGA 3 cut(s) 416, 496, 521
MhlI GDGCHC 4 cut(s) 113, 244, 506, 761
MlsI TGGCCA 1 cut(s) 127
MluCI AATT 4 cut(s) 49, 388, 460, 487
MluNI TGGCCA 1 cut(s) 127
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 4 cut(s) 274, 467, 532, 708
Mox20I TGGCCA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 127
MseI TTAA 2 cut(s) 524, 573
Msp20I TGGCCA 1 cut(s) 127
MspI CCGG 1 cut(s) 189
MwoI GCNNNNNNNGC 4 cut(s) 108, 315, 361, 566
NdeI CATATG 1 cut(s) 122
NdeII GATC 1 cut(s) 732
NlaIII CATG 4 cut(s) 71, 225, 285, 318
NlaIV GGNNCC 4 cut(s) 242, 503, 610, 766
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 3 cut(s) 343, 371, 706
NspI RCATGY 2 cut(s) 285, 318
PaeI GCATGC 1 cut(s) 318
PfeI GAWTC 3 cut(s) 4, 274, 689
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspFI CCCAGC 3 cut(s) 184, 613, 753
PspN4I GGNNCC 4 cut(s) 242, 503, 610, 766
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 2 cut(s) 240, 241
PstNI CAGNNNCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SaqAI TTAA 2 cut(s) 524, 573
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 1 cut(s) 732
Sau96I GGNCC 2 cut(s) 240, 241
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 4 cut(s) 113, 244, 506, 761
SetI ASST 7 cut(s) 166, 373, 407, 522, 543, 680, 740
SfaNI GCATC 3 cut(s) 242, 464, 646
SphI GCATGC 1 cut(s) 318
Sse9I AATT 4 cut(s) 49, 388, 460, 487
SsiI CCGC 2 cut(s) 171, 210
StyI CCWWGG 2 cut(s) 215, 531
TaaI ACNGT 3 cut(s) 85, 230, 299
TasI AATT 4 cut(s) 49, 388, 460, 487
TatI WGTACW 1 cut(s) 636
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 3 cut(s) 4, 274, 689
Tru1I TTAA 2 cut(s) 524, 573
Tru9I TTAA 2 cut(s) 524, 573
TscAI CASTG 4 cut(s) 162, 348, 583, 766
TseFI GTSAC 3 cut(s) 343, 371, 706
Tsp45I GTSAC 3 cut(s) 343, 371, 706
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 162, 348, 583, 766
XapI RAATTY 3 cut(s) 49, 388, 487
XceI RCATGY 2 cut(s) 285, 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.