RLG00000021888

thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012284
Physical Location & Seq
Reverse (-)
79061204 .. 79062094
891 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021888

Sequence Viewer

Length: 780 bp
ATGAAGCTACCGGTGTTTGTTGCTTCTTTTCCTCTGTTTCTAACATGGGGTTCCATGTTATTTGGACATGGAGCAGCACAGACAGTTAAATTTAAAATACACAACAAGTGCCCCTTCCCCATATGGCCTGCAACTGCTCCCAACAATGGTCAACCGGTGATAGCTGATGGTGGCTTCTCCCTGCCGGCTAGCCAGTCTAAACGCATTACGGCCCCGGGGTCATGGAGCGGTCGGATTTGGGCCCGAACAGGATGCAACTTTGCCTCTAATAGGAGTCCTGCTTGTGAAACTGGAGACTGTGATGGAAGATTAGCATGCAATGGACTAATAGGCACTCCACCAGTGACATTGGTGCAAGTTGCGCTTCAAGCCGACAAAGGCAAGCCAAATTACTATGATGTGAGCGTGGTCGATGGGTACAATCTTCCGGTTTCAGTCCTATCAAAGCCCGTAGCATCGAATTGTGCTATTAGTGGGTGCTTGAAAGACTTGAAAACTAGGTGTCCAGAAAAGCTTCAGGTTATGAACAGCGCAGGGAAAGTAGTAGCTTGCAAAAGTGCCTGCTTGGCATTTAATAAGGACTCATATTGTTGCAGAAATCAGTATGGAACTCCAGATAAATGCAAGCCGAGTGAGTACTCCAAGATATTCAAAGATGCTTGTCCCTCTTATTATAGCTATGCTTATGATTCACCACCTCCATTGGTGAACTGCAAGGCCGATGAGTATTTGATTACCTTTTGTCCTTCAGGCTGGGGTGGTGAGCATACTTCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

260

Amino Acids

27.86

Weight (kDa)

8.8

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 249 7.8e-79 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40020
fragaria_vesca FvH4_6g49590
malus_domestica MD09G1043300.v1.1 MD17G1044800.v1.1
prunus_persica Prupe.3G274400_v2.0.a1
pyrus_communis pycom111g03390 pycom17g03960
rosa_chinensis RchiOBHm_Chr2g0169621
rosa_laevigata RLG00000021888
rosa_multiflora Rmu_sc0023940.1_g000005 Rmu_sc0023940.1_g000006
rosa_roxburghii Rroxscaffold_2G00081950
rosa_rugosa Rorug02G0541500
rosa_samantha Rh2AG613900 Rh2BG626100 Rh2CG595400 Rh2DG637000
rosa_wichuraiana Rw0G022920 Rw2G050870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 228
AciI CCGC 1 cut(s) 228
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 500, 732
AfaI GTAC 2 cut(s) 419, 638
AfiI CCNNNNNNNGG 2 cut(s) 146, 270
AgeI ACCGGT 2 cut(s) 10, 154
AgsI TTSAA 4 cut(s) 368, 484, 493, 652
AluBI AGCT 5 cut(s) 7, 164, 514, 548, 678
AluI AGCT 5 cut(s) 7, 164, 514, 548, 678
Alw26I GTCTC 1 cut(s) 288
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 4 cut(s) 125, 210, 240, 717
ApaI GGGCCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 89
AsiGI ACCGGT 2 cut(s) 10, 154
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 2 cut(s) 364, 533
AspS9I GGNCC 3 cut(s) 211, 240, 241
AsuC2I CCSGG 2 cut(s) 215, 216
AsuHPI GGTGA 4 cut(s) 169, 684, 718, 773
AsuNHI GCTAGC 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 214
BaeGI GKGCMC 2 cut(s) 113, 244
BanII GRGCYC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 161, 296, 407
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BcnI CCSGG 2 cut(s) 215, 216
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 189, 498
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 2 cut(s) 215, 216
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 3 cut(s) 211, 240, 241
BmiI GGNNCC 3 cut(s) 52, 213, 242
BmrFI CCNGG 2 cut(s) 215, 216
BmsI GCATC 3 cut(s) 242, 464, 646
BmtI GCTAGC 1 cut(s) 192
BpmI CTGGAG 2 cut(s) 312, 597
BpuMI CCSGG 2 cut(s) 215, 216
BsaJI CCNNGG 3 cut(s) 213, 214, 215
BsaWI WCCGGW 3 cut(s) 10, 154, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 270
Bse118I RCCGGY 3 cut(s) 10, 154, 184
Bse1I ACTGG 3 cut(s) 193, 295, 341
Bse3DI GCAATG 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 213, 214, 215
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 146, 270
BseMI GCAATG 1 cut(s) 325
BseNI ACTGG 3 cut(s) 193, 295, 341
BseSI GKGCMC 2 cut(s) 113, 244
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 753
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 4 cut(s) 127, 212, 242, 719
BshTI ACCGGT 2 cut(s) 10, 154
BsiEI CGRYCG 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 5 cut(s) 11, 155, 185, 215, 428
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 2 cut(s) 146, 270
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 648
BsnI GGCC 4 cut(s) 127, 212, 242, 719
BsoBI CYCGRG 1 cut(s) 214
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 113, 244
BspACI CCGC 1 cut(s) 228
BspANI GGCC 4 cut(s) 127, 212, 242, 719
BspLI GGNNCC 3 cut(s) 52, 213, 242
BspOI GCTAGC 1 cut(s) 192
BsrBI CCGCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 3 cut(s) 10, 154, 184
BsrI ACTGG 3 cut(s) 193, 295, 341
BssAI RCCGGY 3 cut(s) 10, 154, 184
BssECI CCNNGG 3 cut(s) 213, 214, 215
Bst4CI ACNGT 2 cut(s) 85, 299
BstC8I GCNNGC 8 cut(s) 129, 186, 190, 316, 383, 550, 562, 626
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 257
BstHHI GCGC 2 cut(s) 364, 533
BstMAI GTCTC 1 cut(s) 288
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 3 cut(s) 361, 368, 566
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 213, 214
BstSLI GKGCMC 2 cut(s) 113, 244
BstV1I GCAGC 1 cut(s) 86
BsuRI GGCC 4 cut(s) 127, 212, 242, 719
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 8 cut(s) 129, 186, 190, 316, 383, 550, 562, 626
CfoI GCGC 2 cut(s) 364, 533
Cfr10I RCCGGY 3 cut(s) 10, 154, 184
Cfr13I GGNCC 3 cut(s) 211, 240, 241
Cfr9I CCCGGG 1 cut(s) 214
Csp6I GTAC 2 cut(s) 418, 637
CspAI ACCGGT 2 cut(s) 10, 154
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 5 cut(s) 45, 55, 68, 222, 315
CviQI GTAC 2 cut(s) 418, 637
DraI TTTAAA 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 500, 732
Eco88I CYCGRG 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 5 cut(s) 48, 58, 71, 225, 318
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 348, 380
FaqI GGGAC 1 cut(s) 648
FatI CATG 5 cut(s) 44, 54, 67, 221, 314
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 189, 498
GlaI GCGC 2 cut(s) 363, 532
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 757
GsuI CTGGAG 2 cut(s) 312, 597
HaeIII GGCC 4 cut(s) 127, 212, 242, 719
HapII CCGG 5 cut(s) 11, 155, 185, 215, 428
HhaI GCGC 2 cut(s) 364, 533
Hin1II CATG 5 cut(s) 48, 58, 71, 225, 318
Hin6I GCGC 2 cut(s) 362, 531
HinP1I GCGC 2 cut(s) 362, 531
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 3 cut(s) 274, 581, 689
HpaII CCGG 5 cut(s) 11, 155, 185, 215, 428
HphI GGTGA 4 cut(s) 169, 684, 718, 773
Hpy166II GTNNAC 2 cut(s) 152, 709
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 506, 614
Hpy8I GTNNAC 2 cut(s) 152, 709
HpyAV CCTTC 2 cut(s) 124, 756
HpyCH4III ACNGT 2 cut(s) 85, 299
HpyCH4V TGCA 8 cut(s) 131, 255, 318, 355, 552, 594, 624, 714
HpyF10VI GCNNNNNNNGC 3 cut(s) 361, 368, 566
Hsp92II CATG 5 cut(s) 48, 58, 71, 225, 318
HspAI GCGC 2 cut(s) 362, 531
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
LmnI GCTCC 3 cut(s) 71, 142, 225
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 3 cut(s) 242, 464, 646
MaeI CTAG 2 cut(s) 189, 498
MaeIII GTNAC 1 cut(s) 343
MbiI CCGCTC 1 cut(s) 228
MboII GAAGA 2 cut(s) 318, 416
MhlI GDGCHC 2 cut(s) 113, 244
MluCI AATT 3 cut(s) 89, 388, 460
MlyI GAGTC 2 cut(s) 283, 575
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 4 cut(s) 42, 274, 676, 708
MroNI GCCGGC 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 3 cut(s) 87, 93, 573
MspI CCGG 5 cut(s) 11, 155, 185, 215, 428
MspR9I CCNGG 2 cut(s) 215, 216
MwoI GCNNNNNNNGC 3 cut(s) 361, 368, 566
NaeI GCCGGC 1 cut(s) 186
NciI CCSGG 2 cut(s) 215, 216
NdeI CATATG 1 cut(s) 122
NgoMIV GCCGGC 1 cut(s) 184
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 5 cut(s) 48, 58, 71, 225, 318
NlaIV GGNNCC 3 cut(s) 52, 213, 242
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PdiI GCCGGC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 1 cut(s) 689
PinAI ACCGGT 2 cut(s) 10, 154
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 282, 575
PpsI GAGTC 2 cut(s) 282, 575
PspFI CCCAGC 1 cut(s) 753
PspN4I GGNNCC 3 cut(s) 52, 213, 242
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 3 cut(s) 211, 240, 241
RsaI GTAC 2 cut(s) 419, 638
RsaNI GTAC 2 cut(s) 418, 637
SaqAI TTAA 3 cut(s) 87, 93, 573
SatI GCNGC 1 cut(s) 75
Sau96I GGNCC 3 cut(s) 211, 240, 241
ScaI AGTACT 1 cut(s) 638
SchI GAGTC 2 cut(s) 283, 575
ScrFI CCNGG 2 cut(s) 215, 216
SduI GDGCHC 2 cut(s) 113, 244
SetI ASST 9 cut(s) 9, 166, 503, 516, 522, 550, 680, 700, 740
SfaNI GCATC 3 cut(s) 242, 464, 646
SmaI CCCGGG 1 cut(s) 216
SphI GCATGC 1 cut(s) 318
Sse9I AATT 3 cut(s) 89, 388, 460
SsiI CCGC 1 cut(s) 228
SspMI CTAG 2 cut(s) 189, 498
StyD4I CCNGG 2 cut(s) 213, 214
TaaI ACNGT 2 cut(s) 85, 299
TaqI TCGA 2 cut(s) 411, 458
TasI AATT 3 cut(s) 89, 388, 460
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 3 cut(s) 87, 93, 573
Tru9I TTAA 3 cut(s) 87, 93, 573
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 17, 539
TspMI CCCGGG 1 cut(s) 214
TspRI CASTG 1 cut(s) 348
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 318
XmaI CCCGGG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 2 cut(s) 189, 498
ZrmI AGTACT 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.