AT5G40160

Ankyrin repeat domain-containing protein EMB506

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011420
Physical Location & Seq
Reverse (-)
16062479 .. 16064689
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40160.1

Sequence Viewer

Length: 948 bp
ATGGTCTCTTCGGTTTTATCCATCCCTCCACAAACTTGTCTACTTCCACGATTACCCATCTCTGATTCTGTCAATTGCAAATCGAAAATCGTGTACTGTCTCTCCACAAGTGTCCGAGGAAGCTCCGTCAAGAGACAATCCACGGCCAGAACTCGCAGTTTCACTGAGACAAATCGTCGAACACCTTCCGTGCAATCCAAACATGAATTCTGGGAAGATCCAGATGATGGTAGCGACAGTGAAAACGAATATGAAGGAGAAGAAGAAGATGGTATTGGGAATGATTTAGATAACGAGAGTGATTGGGAAGATGACTCGAGAGTACAAAAGCTTACTACTACAGACAACTACGAGGAAGAGCTTGCAAAAGAGGTTGAACAACTTCTTGAACCTGAAGAAAGAGTAATTCTTCAGCAAAATGAGAAACCAAATCTCAAGATGATCTCAACAAAGAGTTGGAAGCCACTTCAGACACTTGCTCTGTCAATGCAGATTCAGTTAATGGATAATCTTATTGAAAACGGACTAGACATTGATGATGTTGACAAGGACAACCAAACCGCTCTTCACAAAGCAATCATTGGTAAAAAAGAAGCGGTGATTAGTCATCTTTTGAGGAAAGGAGCTAATCCGCATCTTCAAGATCGGGACGGTGCAGCTCCGATTCATTATGCAGTTCAAGTTGGAGCCTTGCAGACTGTAAAACTACTATTCAAGTACAATGTAGACGTCAATGTTGCAGATAATGAAGGATGGACTCCGTTACATATAGCTGTACAAAGCCGAAATCGAGACATTACAAAGATATTGTTGACCAATGGTGCTGATAAAACAAGACGAACAAAGGATGGGAAATTAGCTTTGGACTTGGCTCTGTGCTTTGGAAGAGATTTCAAGTCATATGATCTGGTCAAGCTATTGAAGATTATGCCCACCGGGGATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

315

Amino Acids

35.46

Weight (kDa)

5.09

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 142 - 215 4e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 199 - 280 1.2e-18 Ankyrin repeats (3 copies)
Ank_5 PF13857 204 - 258 3.8e-11 Ankyrin repeats (many copies)
Ank_4 PF13637 222 - 271 1.4e-09 Ankyrin repeats (many copies)
Ank_5 PF13857 250 - 291 3.8e-07 Ankyrin repeats (many copies)
Ank PF00023 251 - 281 1.9e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40160 AT5G40160
fragaria_vesca FvH4_5g31250 FvH4_5g31250 FvH4_5g31250
malus_domestica MD05G1026500.v1.1
prunus_persica Prupe.3G132600_v2.0.a1
pyrus_communis pycom05g01830
rosa_chinensis RchiOBHm_Chr7g0226491
rosa_laevigata RLG00000001726
rosa_multiflora Rmu_sc0001423.1_g000067 Rmu_sc0001470.1_g000013
rosa_rugosa Rorug07G0237500
rosa_samantha Rh4CG052600 Rh7AG384700 Rh7BG371500 Rh7CG404000 Rh7DG383700
rosa_wichuraiana Rw4G003890 Rw7G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 732
AccB7I CCANNNNNTGG 1 cut(s) 227
AccBSI CCGCTC 1 cut(s) 563
AccI GTMKAC 2 cut(s) 40, 726
AciI CCGC 3 cut(s) 561, 596, 632
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 3 cut(s) 395, 414, 452
AcyI GRCGYC 1 cut(s) 729
AfaI GTAC 4 cut(s) 95, 324, 719, 777
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 8 cut(s) 377, 389, 518, 641, 680, 715, 895, 922
AhdI GACNNNNNGTC 1 cut(s) 174
AjuI GAANNNNNNNTTGG 8 cut(s) 191, 223, 258, 290, 549, 581, 845, 877
AluBI AGCT 8 cut(s) 123, 331, 361, 626, 659, 773, 860, 916
AluI AGCT 8 cut(s) 123, 331, 361, 626, 659, 773, 860, 916
Alw26I GTCTC 5 cut(s) 10, 104, 127, 161, 786
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 316
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 656
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 2 cut(s) 184, 381
AsuC2I CCSGG 1 cut(s) 937
AsuHPI GGTGA 1 cut(s) 610
AvaI CYCGRG 1 cut(s) 316
BbvI GCAGC 1 cut(s) 668
BccI CCATC 6 cut(s) 29, 65, 221, 263, 747, 842
BceAI ACGGC 1 cut(s) 159
BcnI CCSGG 1 cut(s) 937
BcoDI GTCTC 5 cut(s) 10, 104, 127, 161, 786
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 657
BlsI GCNGC 1 cut(s) 658
Bme1390I CCNGG 1 cut(s) 937
BmeRI GACNNNNNGTC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 688
BmrFI CCNGG 1 cut(s) 937
BmsI GCATC 1 cut(s) 643
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 937
BsaHI GRCGYC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 115, 141, 936
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 115, 141, 936
BseGI GGATG 3 cut(s) 21, 758, 853
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 668
BsgI GTGCAG 1 cut(s) 675
BshFI GGCC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 316
BsiSI CCGG 1 cut(s) 936
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 5 cut(s) 10, 104, 127, 161, 786
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 316
Bsp1407I TGTACA 1 cut(s) 775
Bsp143I GATC 4 cut(s) 217, 441, 643, 904
BspACI CCGC 3 cut(s) 561, 596, 632
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 688
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 2 cut(s) 351, 570
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 563
BsrGI TGTACA 1 cut(s) 775
BssECI CCNNGG 3 cut(s) 115, 141, 936
BssMI GATC 4 cut(s) 217, 441, 643, 904
BssNI GRCGYC 1 cut(s) 729
Bst4CI ACNGT 4 cut(s) 98, 239, 653, 700
Bst6I CTCTTC 4 cut(s) 13, 351, 570, 880
BstACI GRCGYC 1 cut(s) 729
BstAUI TGTACA 1 cut(s) 775
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 21, 758, 853
BstKTI GATC 4 cut(s) 220, 444, 646, 907
BstMAI GTCTC 5 cut(s) 10, 104, 127, 161, 786
BstMBI GATC 4 cut(s) 217, 441, 643, 904
BstSCI CCNGG 1 cut(s) 935
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 668
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 21, 758, 853
BtsIMutI CAGTG 2 cut(s) 162, 244
Cac8I GCNNGC 1 cut(s) 363
Csp6I GTAC 4 cut(s) 94, 323, 718, 776
CviAII CATG 1 cut(s) 203
CviQI GTAC 4 cut(s) 94, 323, 718, 776
DdeI CTNAG 1 cut(s) 165
DpnI GATC 4 cut(s) 219, 443, 645, 906
DpnII GATC 4 cut(s) 217, 441, 643, 904
DriI GACNNNNNGTC 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 4 cut(s) 13, 351, 570, 880
Eam1105I GACNNNNNGTC 1 cut(s) 174
EarI CTCTTC 4 cut(s) 13, 351, 570, 880
Eco31I GGTCTC 1 cut(s) 10
Eco57I CTGAAG 3 cut(s) 395, 414, 452
Eco88I CYCGRG 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 206
FaeI CATG 1 cut(s) 206
FaqI GGGAC 1 cut(s) 662
FatI CATG 1 cut(s) 202
FauNDI CATATG 1 cut(s) 901
FblI GTMKAC 2 cut(s) 40, 726
Fnu4HI GCNGC 1 cut(s) 657
FokI GGATG 3 cut(s) 8, 765, 860
Fsp4HI GCNGC 1 cut(s) 657
FspBI CTAG 1 cut(s) 527
GluI GCNGC 1 cut(s) 657
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 936
Hin1I GRCGYC 1 cut(s) 729
Hin1II CATG 1 cut(s) 206
HincII GTYRAC 2 cut(s) 544, 813
HindII GTYRAC 2 cut(s) 544, 813
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 5 cut(s) 65, 314, 493, 664, 757
HpaII CCGG 1 cut(s) 936
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 5 cut(s) 41, 94, 544, 727, 813
Hpy188I TCNGA 4 cut(s) 64, 116, 471, 663
Hpy188III TCNNGA 8 cut(s) 130, 221, 318, 386, 436, 641, 647, 791
Hpy8I GTNNAC 5 cut(s) 41, 94, 544, 727, 813
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 3 cut(s) 195, 248, 743
HpyCH4III ACNGT 4 cut(s) 98, 239, 653, 700
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 8 cut(s) 78, 193, 365, 490, 656, 674, 694, 740
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 729
Hsp92I GRCGYC 1 cut(s) 729
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 4 cut(s) 217, 441, 643, 904
LguI GCTCTTC 2 cut(s) 351, 570
LmnI GCTCC 4 cut(s) 128, 623, 664, 686
LpnPI CCDG 5 cut(s) 160, 196, 234, 405, 893
Lsp1109I GCAGC 1 cut(s) 668
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 527
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 1 cut(s) 762
MalI GATC 4 cut(s) 219, 443, 645, 906
MbiI CCGCTC 1 cut(s) 563
MboI GATC 4 cut(s) 217, 441, 643, 904
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 1 cut(s) 217
MluCI AATT 4 cut(s) 73, 206, 405, 854
MlyI GAGTC 2 cut(s) 308, 751
MmeI TCCRAC 2 cut(s) 437, 664
MnlI CCTC 5 cut(s) 36, 110, 346, 364, 609
MroXI GAANNNNTTC 2 cut(s) 184, 381
MseI TTAA 1 cut(s) 500
MspI CCGG 1 cut(s) 936
MspR9I CCNGG 1 cut(s) 937
MunI CAATTG 1 cut(s) 73
NciI CCSGG 1 cut(s) 937
NdeI CATATG 1 cut(s) 901
NdeII GATC 4 cut(s) 217, 441, 643, 904
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 688
PaeR7I CTCGAG 1 cut(s) 316
PciSI GCTCTTC 2 cut(s) 351, 570
PdmI GAANNNNTTC 2 cut(s) 184, 381
PfeI GAWTC 3 cut(s) 65, 493, 664
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 1 cut(s) 658
PleI GAGTC 2 cut(s) 308, 751
PpsI GAGTC 2 cut(s) 308, 751
PspN4I GGNNCC 1 cut(s) 688
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 4 cut(s) 95, 324, 719, 777
RsaNI GTAC 4 cut(s) 94, 323, 718, 776
SapI GCTCTTC 2 cut(s) 351, 570
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 1 cut(s) 657
Sau3AI GATC 4 cut(s) 217, 441, 643, 904
SchI GAGTC 2 cut(s) 308, 751
ScrFI CCNGG 1 cut(s) 937
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 1 cut(s) 339
Sfr274I CTCGAG 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 316
SmlI CTYRAG 2 cut(s) 316, 434
SmoI CTYRAG 2 cut(s) 316, 434
Sse9I AATT 4 cut(s) 73, 206, 405, 854
SsiI CCGC 3 cut(s) 561, 596, 632
SspMI CTAG 1 cut(s) 527
StyD4I CCNGG 1 cut(s) 935
TaaI ACNGT 4 cut(s) 98, 239, 653, 700
TaiI ACGT 1 cut(s) 732
TaqI TCGA 4 cut(s) 83, 178, 317, 790
TasI AATT 4 cut(s) 73, 206, 405, 854
TatI WGTACW 4 cut(s) 93, 322, 717, 775
TfiI GAWTC 3 cut(s) 65, 493, 664
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TscAI CASTG 2 cut(s) 169, 244
TseI GCWGC 1 cut(s) 656
TspDTI ATGAA 4 cut(s) 219, 267, 656, 762
TspGWI ACGGA 4 cut(s) 115, 178, 537, 750
TspRI CASTG 2 cut(s) 169, 244
Van91I CCANNNNNTGG 1 cut(s) 227
XapI RAATTY 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 316
XmiI GTMKAC 2 cut(s) 40, 726
XmnI GAANNNNTTC 2 cut(s) 184, 381
XspI CTAG 1 cut(s) 527
ZraI GACGTC 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.