Rw4G003890

Ankyrin repeat domain-containing protein EMB506

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0011420
Physical Location & Seq
Forward (+)
7656968 .. 7666121
9154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G003890.1

Sequence Viewer

Length: 342 bp
ATGGAAGATGTCCTTTTTCAGAAGCCCAAGGCTGCGTCTCGTGTGGGAACATGGGAAGGTCCTGATGATGGCAGTGGGACTGAATCTGAGGAGGAGGAGGAAGAAGAAGAAGAACATGACTTGGGTTTCCAAAGCGAATGGGAAGAAGATGAAGAAAAGCGGGCTCCAGCTGCTAATGCTGGTGATGTTCAGAAGTCCACAACAAATGAGTTAGAAGAGCAACTTGTGAAAGGGAGTGTTCGTCCTGATACAAGTCAGAGATGGGCTAGAGAAGTGGAAGAGCAAAAGCTTATTGGCAGTGGAGCACTGGATTTGCAGGGACATGCCTCTAATGACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

113

Amino Acids

12.53

Weight (kDa)

4.18

Isoelectric Point (pI)

67.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40160 AT5G40160
fragaria_vesca FvH4_5g31250 FvH4_5g31250 FvH4_5g31250
malus_domestica MD05G1026500.v1.1
prunus_persica Prupe.3G132600_v2.0.a1
pyrus_communis pycom05g01830
rosa_chinensis RchiOBHm_Chr7g0226491
rosa_laevigata RLG00000001726
rosa_multiflora Rmu_sc0001423.1_g000067 Rmu_sc0001470.1_g000013
rosa_rugosa Rorug07G0237500
rosa_samantha Rh4CG052600 Rh7AG384700 Rh7BG371500 Rh7CG404000 Rh7DG383700
rosa_wichuraiana Rw4G003890 Rw7G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 336
AfiI CCNNNNNNNGG 1 cut(s) 68
AluBI AGCT 2 cut(s) 170, 289
AluI AGCT 2 cut(s) 170, 289
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 32, 170
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 166
BauI CACGAG 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 2 cut(s) 19, 157
BccI CCATC 2 cut(s) 62, 255
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 267
BisI GCNGC 2 cut(s) 33, 171
BlsI GCNGC 2 cut(s) 34, 172
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 3 cut(s) 104, 107, 110
BseXI GCAGC 2 cut(s) 19, 157
BsiHKAI GWGCWC 1 cut(s) 307
BslFI GGGAC 2 cut(s) 91, 333
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 91, 333
Bsp1286I GDGCHC 2 cut(s) 166, 307
BspACI CCGC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 165
BspQI GCTCTTC 2 cut(s) 210, 273
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 27
BssNI GRCGYC 1 cut(s) 336
BssSI CACGAG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 210, 273
BstACI GRCGYC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 170, 176
BstNSI RCATGY 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 19, 157
BtsI GCAGTG 2 cut(s) 79, 304
BtsIMutI CAGTG 3 cut(s) 79, 304, 305
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 59
CseI GACGC 1 cut(s) 24
CviAII CATG 3 cut(s) 51, 116, 323
CviJI RGCY 6 cut(s) 25, 32, 164, 170, 266, 289
CviKI_1 RGCY 6 cut(s) 25, 32, 164, 170, 266, 289
DdeI CTNAG 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 210, 273
EarI CTCTTC 2 cut(s) 210, 273
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 3 cut(s) 54, 119, 326
FaiI YATR 3 cut(s) 52, 117, 324
FalI AAGNNNNNCTT 3 cut(s) 29, 207, 239
FaqI GGGAC 2 cut(s) 91, 333
FatI CATG 3 cut(s) 50, 115, 322
FauI CCCGC 1 cut(s) 153
Fnu4HI GCNGC 2 cut(s) 33, 171
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 33, 171
FspBI CTAG 1 cut(s) 267
GluI GCNGC 2 cut(s) 33, 171
GsuI CTGGAG 1 cut(s) 150
HgaI GACGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 3 cut(s) 54, 119, 326
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 1 cut(s) 83
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 4 cut(s) 21, 88, 192, 258
Hpy188III TCNNGA 2 cut(s) 62, 245
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 176
HpyF3I CTNAG 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 3 cut(s) 54, 119, 326
LguI GCTCTTC 2 cut(s) 210, 273
LmnI GCTCC 2 cut(s) 169, 302
LpnPI CCDG 6 cut(s) 75, 165, 180, 258, 293, 302
Lsp1109I GCAGC 2 cut(s) 19, 157
MaeI CTAG 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 166, 307
MnlI CCTC 5 cut(s) 82, 85, 88, 91, 337
MspA1I CMGCKG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 170, 176
NlaIII CATG 3 cut(s) 54, 119, 326
NlaIV GGNNCC 1 cut(s) 165
NspI RCATGY 1 cut(s) 326
PciSI GCTCTTC 2 cut(s) 210, 273
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 34, 172
PpuMI RGGWCCY 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 59
PspPPI RGGWCCY 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 170
SapI GCTCTTC 2 cut(s) 210, 273
SatI GCNGC 2 cut(s) 33, 171
Sau96I GGNCC 1 cut(s) 59
SduI GDGCHC 2 cut(s) 166, 307
SetI ASST 3 cut(s) 61, 172, 291
SinI GGWCC 1 cut(s) 59
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 27
TfiI GAWTC 1 cut(s) 83
TscAI CASTG 3 cut(s) 79, 304, 312
TseI GCWGC 2 cut(s) 32, 170
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 3 cut(s) 79, 304, 312
VpaK11BI GGWCC 1 cut(s) 59
XceI RCATGY 1 cut(s) 326
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.