FvH4_5g31250

Ankyrin repeat domain-containing protein EMB506

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011420
Physical Location & Seq
Reverse (-)
22135573 .. 22138700
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31250.t3

Sequence Viewer

Length: 1017 bp
ATGAGCATGGTTTCCATCCCAGCATTCTCAGCTTTACATGCAATCTCAATACCCAGAGATTATCATTCTTTTGCAATAGTGAACTCCTTGAAGGCCAAGGGGAAGAGTTATCAATTAGAATTGCTTGGCAACACCAATGTCTTGAAAGCATATAGTATATGGAGTGGCAGCTTTAGCTCCTCTGGCAAGCACTCGAAGTTGAGGACCTTTTTGGTTGAGGCAAACCAAGAATCTTCGTTACTGTCTCGTGTGGGAGCTTGGGAACATCCTGATGATGGCAGTGGGGGTGAATCTGAGGAGGAGGAGGAAGAAGAAGAACATGACTTGGGTTTCCAGAGTGAATGGGAAGAAGATGAAGAAAAGCGGGTTCTAGCTGCTAATGCTGGTGATGTTCAGAAGTCCATGACAAATGAGTATGAAGAGCAACTTGTAAAAGAGGTAGAGCAGCTCTTGGAGGTAGAAGAAAGAGCAATTTTGCAAAGGCATGCAGCTCCCAACATGGAGAGATTATCCACTGCAAAATGGAGCCCACTACATACTCTTTCACTATCTGGGCTAGTTCCTTTCATGGACAAGCTACTTGAAGATGGTGTAGATATTAATCTTTTTGACAAAGATGGTGTAACTGCTCTTCATACTGCAATTATAGGCAAAAAGGAAGCTGTTATTAATCATCTTCTAAGAAAAGGTGCAAGTCCTCATGTCAGAGATTGGGATGGAGCTACTCCACTTCATTATGCAGTTCACGTAGGCGCCAAGCGGATTGTGAAGTTGTTGATCAAATACAAAGTTGATGTCAATATCGCAGATAATGACGGATGGACGCCATTGCACATTGCTGTGCAAAGTAGAAACAGAGATATTGTGAAACTTTTGTTAGTGAATGGTGCAGATAAGAGTAGAAGAAATAAGGATGGCAGAACTCCCATAGATCTGGGCTTATGTTATGGGAAAGACTTCAAGTCCTATGACCTCACCAAGTTACTGAAGACAGTACCAATGGACAGAGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

339

Amino Acids

37.85

Weight (kDa)

5.66

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 162 - 237 4.6e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 221 - 302 2.3e-20 Ankyrin repeats (3 copies)
Ank_5 PF13857 226 - 280 3.6e-11 Ankyrin repeats (many copies)
Ank PF00023 239 - 271 6.7e-08 Ankyrin repeat
Ank_4 PF13637 254 - 293 3.8e-09 Ankyrin repeats (many copies)
Ank PF00023 272 - 304 1.5e-08 Ankyrin repeat
Ank_5 PF13857 275 - 312 4.1e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40160 AT5G40160
fragaria_vesca FvH4_5g31250 FvH4_5g31250 FvH4_5g31250
malus_domestica MD05G1026500.v1.1
prunus_persica Prupe.3G132600_v2.0.a1
pyrus_communis pycom05g01830
rosa_chinensis RchiOBHm_Chr7g0226491
rosa_laevigata RLG00000001726
rosa_multiflora Rmu_sc0001423.1_g000067 Rmu_sc0001470.1_g000013
rosa_rugosa Rorug07G0237500
rosa_samantha Rh4CG052600 Rh7AG384700 Rh7BG371500 Rh7CG404000 Rh7DG383700
rosa_wichuraiana Rw4G003890 Rw7G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 752
AciI CCGC 2 cut(s) 364, 760
AcsI RAATTY 1 cut(s) 1010
AcuI CTGAAG 1 cut(s) 1007
AcyI GRCGYC 2 cut(s) 753, 824
AfaI GTAC 1 cut(s) 996
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 4 cut(s) 91, 145, 584, 961
AhdI GACNNNNNGTC 1 cut(s) 961
Alw26I GTCTC 1 cut(s) 249
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 4 cut(s) 168, 374, 445, 488
ApoI RAATTY 1 cut(s) 1010
ArsI GACNNNNNNTTYG 2 cut(s) 780, 812
AseI ATTAAT 2 cut(s) 600, 669
Asp700I GAANNNNTTC 1 cut(s) 956
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 3 cut(s) 299, 398, 967
AvaII GGWCC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 752
BanII GRGCYC 1 cut(s) 530
BarI GAAGNNNNNNTAC 2 cut(s) 615, 647
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 995
BbvI GCAGC 4 cut(s) 180, 361, 457, 500
BccI CCATC 7 cut(s) 23, 269, 581, 611, 710, 813, 908
BclI TGATCA 1 cut(s) 777
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 2 cut(s) 371, 557
BfoI RGCGCY 1 cut(s) 756
BglII AGATCT 1 cut(s) 931
BisI GCNGC 4 cut(s) 169, 375, 446, 489
BlsI GCNGC 4 cut(s) 170, 376, 447, 490
Bme18I GGWCC 1 cut(s) 204
BmeRI GACNNNNNGTC 1 cut(s) 961
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 527, 754
BpiI GAAGAC 1 cut(s) 995
BsaAI YACGTR 1 cut(s) 748
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 2 cut(s) 753, 824
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse3DI GCAATG 2 cut(s) 827, 834
Bse8I GATNNNNATC 1 cut(s) 600
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 5 cut(s) 15, 265, 721, 824, 919
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 2 cut(s) 827, 834
BseMII CTCAG 2 cut(s) 42, 285
BseRI GAGGAG 4 cut(s) 169, 311, 314, 317
BseXI GCAGC 4 cut(s) 180, 361, 457, 500
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 909
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 752
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 777, 931
BspACI CCGC 2 cut(s) 364, 760
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 41, 286
BspLI GGNNCC 2 cut(s) 527, 754
BspQI GCTCTTC 2 cut(s) 414, 636
BspT107I GGYRCC 1 cut(s) 752
BsrDI GCAATG 2 cut(s) 827, 834
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 777, 931
BssNI GRCGYC 2 cut(s) 753, 824
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 243, 994
Bst6I CTCTTC 3 cut(s) 98, 414, 636
BstACI GRCGYC 2 cut(s) 753, 824
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 2 cut(s) 188, 486
BstDEI CTNAG 3 cut(s) 28, 294, 680
BstF5I GGATG 5 cut(s) 15, 265, 721, 824, 919
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 2 cut(s) 780, 934
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 777, 931
BstMWI GCNNNNNNNGC 5 cut(s) 29, 38, 174, 183, 380
BstNSI RCATGY 2 cut(s) 41, 488
BstV1I GCAGC 4 cut(s) 180, 361, 457, 500
BstV2I GAAGAC 1 cut(s) 995
BstX2I RGATCY 1 cut(s) 931
BstXI CCANNNNNNTGG 1 cut(s) 934
BstYI RGATCY 1 cut(s) 931
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 5 cut(s) 15, 265, 721, 824, 919
BtsI GCAGTG 2 cut(s) 286, 513
BtsIMutI CAGTG 2 cut(s) 286, 513
Cac8I GCNNGC 2 cut(s) 188, 486
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 1 cut(s) 204
CseI GACGC 1 cut(s) 832
Csp6I GTAC 1 cut(s) 995
CviAII CATG 8 cut(s) 7, 38, 320, 403, 485, 499, 568, 701
CviQI GTAC 1 cut(s) 995
DdeI CTNAG 3 cut(s) 28, 294, 680
DinI GGCGCC 1 cut(s) 754
DpnI GATC 2 cut(s) 779, 933
DpnII GATC 2 cut(s) 777, 931
DriI GACNNNNNGTC 1 cut(s) 961
Eam1104I CTCTTC 3 cut(s) 98, 414, 636
Eam1105I GACNNNNNGTC 1 cut(s) 961
EarI CTCTTC 3 cut(s) 98, 414, 636
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 1007
EcoO109I RGGNCCY 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 530
EgeI GGCGCC 1 cut(s) 754
EheI GGCGCC 1 cut(s) 754
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 8 cut(s) 10, 41, 323, 406, 488, 502, 571, 704
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 8 cut(s) 6, 37, 319, 402, 484, 498, 567, 700
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 1 cut(s) 777
Fnu4HI GCNGC 4 cut(s) 169, 375, 446, 489
FokI GGATG 5 cut(s) 2, 252, 728, 831, 926
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 4 cut(s) 169, 375, 446, 489
FspBI CTAG 2 cut(s) 371, 557
GlaI GCGC 1 cut(s) 754
GluI GCNGC 4 cut(s) 169, 375, 446, 489
GsaI CCCAGC 1 cut(s) 23
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 1 cut(s) 95
HgaI GACGC 1 cut(s) 832
HhaI GCGC 1 cut(s) 755
Hin1I GRCGYC 2 cut(s) 753, 824
Hin1II CATG 8 cut(s) 10, 41, 323, 406, 488, 502, 571, 704
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HinfI GANTC 2 cut(s) 230, 290
HphI GGTGA 3 cut(s) 299, 398, 967
Hpy166II GTNNAC 2 cut(s) 82, 745
Hpy188I TCNGA 3 cut(s) 295, 396, 707
Hpy188III TCNNGA 3 cut(s) 142, 269, 334
Hpy8I GTNNAC 2 cut(s) 82, 745
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 243, 994
HpyCH4IV ACGT 1 cut(s) 747
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 38, 174, 183, 380
HpyF3I CTNAG 3 cut(s) 28, 294, 680
HpySE526I ACGT 1 cut(s) 747
Hsp92I GRCGYC 2 cut(s) 753, 824
Hsp92II CATG 8 cut(s) 10, 41, 323, 406, 488, 502, 571, 704
HspAI GCGC 1 cut(s) 753
KasI GGCGCC 1 cut(s) 752
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 2 cut(s) 777, 931
LguI GCTCTTC 2 cut(s) 414, 636
LmnI GCTCC 5 cut(s) 182, 254, 496, 525, 719
LpnPI CCDG 8 cut(s) 33, 67, 168, 282, 347, 369, 537, 920
Lsp1109I GCAGC 4 cut(s) 180, 361, 457, 500
MaeI CTAG 2 cut(s) 371, 557
MaeII ACGT 1 cut(s) 747
MaeIII GTNAC 3 cut(s) 237, 622, 981
MalI GATC 2 cut(s) 779, 933
MboI GATC 2 cut(s) 777, 931
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 5 cut(s) 113, 119, 471, 642, 1010
Mly113I GGCGCC 1 cut(s) 753
MroXI GAANNNNTTC 1 cut(s) 956
MseI TTAA 2 cut(s) 600, 669
MslI CAYNNNNRTG 2 cut(s) 270, 839
Mva1269I GAATGC 1 cut(s) 23
MwoI GCNNNNNNNGC 5 cut(s) 29, 38, 174, 183, 380
NarI GGCGCC 1 cut(s) 753
NdeII GATC 2 cut(s) 777, 931
NlaIII CATG 8 cut(s) 10, 41, 323, 406, 488, 502, 571, 704
NlaIV GGNNCC 2 cut(s) 527, 754
NspI RCATGY 2 cut(s) 41, 488
PaeI GCATGC 1 cut(s) 488
PciSI GCTCTTC 2 cut(s) 414, 636
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 956
PfeI GAWTC 2 cut(s) 230, 290
PkrI GCNGC 4 cut(s) 170, 376, 447, 490
PluTI GGCGCC 1 cut(s) 756
Ppu21I YACGTR 1 cut(s) 748
PpuMI RGGWCCY 1 cut(s) 204
PshBI ATTAAT 2 cut(s) 600, 669
Psp5II RGGWCCY 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 527, 754
PspPI GGNCC 1 cut(s) 204
PspPPI RGGWCCY 1 cut(s) 204
PsuI RGATCY 1 cut(s) 931
RsaI GTAC 1 cut(s) 996
RsaNI GTAC 1 cut(s) 995
RseI CAYNNNNRTG 2 cut(s) 270, 839
SapI GCTCTTC 2 cut(s) 414, 636
SaqAI TTAA 2 cut(s) 600, 669
SatI GCNGC 4 cut(s) 169, 375, 446, 489
Sau3AI GATC 2 cut(s) 777, 931
Sau96I GGNCC 1 cut(s) 204
SduI GDGCHC 1 cut(s) 530
SfoI GGCGCC 1 cut(s) 754
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 2 cut(s) 270, 839
SphI GCATGC 1 cut(s) 488
Sse9I AATT 5 cut(s) 113, 119, 471, 642, 1010
SsiI CCGC 2 cut(s) 364, 760
SspDI GGCGCC 1 cut(s) 752
SspMI CTAG 2 cut(s) 371, 557
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 243, 994
TaiI ACGT 1 cut(s) 750
TaqI TCGA 1 cut(s) 194
TasI AATT 5 cut(s) 113, 119, 471, 642, 1010
TfiI GAWTC 2 cut(s) 230, 290
Tru1I TTAA 2 cut(s) 600, 669
Tru9I TTAA 2 cut(s) 600, 669
TscAI CASTG 2 cut(s) 286, 520
TseI GCWGC 4 cut(s) 168, 374, 445, 488
TspDTI ATGAA 5 cut(s) 369, 432, 556, 623, 722
TspGWI ACGGA 1 cut(s) 831
TspRI CASTG 2 cut(s) 286, 520
VpaK11BI GGWCC 1 cut(s) 204
VspI ATTAAT 2 cut(s) 600, 669
XapI RAATTY 1 cut(s) 1010
XceI RCATGY 2 cut(s) 41, 488
XmnI GAANNNNTTC 1 cut(s) 956
XspI CTAG 2 cut(s) 371, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.