Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011420

Physical Location & Seq

Genomic Coordinates Forward (+)

10430510 .. 10458102

Gene Structure 27593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG052600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTGGATTGAGTCAATGTCCACCTTGTCCGATACACTGTGTTTCACTTACTCTGAGACTCTAGGGAAATGGCCGATCGACGACTTGGCCTTCGTCATTAACTACCTCATGCGTAGGCAGCTCAAAGGCGCTAAGATTATTGAGGAACTAAATTATTACTTGAAGCTGTTGACGCTTTGTTATCTGTTTTCCAAGAAACCATTTCCGGTGTTTTTAGAGTCCGGCGGTTTCTCTATGGAAGATGTCCTTTTTCAGAAGCCCAAGGCTGCGTCTCGTGTGGGAACATGGGAAGGTCCTGATGATGGCAGTGGGACTGAATCTGAGGAGGAGGAGGAAGAAGAAGAAGAACATGACTTGGGTTTCCAAAGCGAATGGGAAGAAGATGAAGAAAAGCGGGCTCCAGCTGCTAATGCTGGTGATGTTCAGAAGTCCACAACAAATGGGTTAGAAGAGCAACTTGTGAAAGGGAGTGTTCGTCCTGATACAAGTCAGAGATGGGCTAGAGAAGTGGAAGAGCAAAAGCTTATTGGCAGTGGAGCACTGGATTTGCAGGGACATGCCTCCAATGTATGGAGCAACCAGCTGAACACACACTGGCTGACAAATTTGGGAATGCGTGTGTTGATATATAGACCATTTATCAGCTTCTTGAAACAAGTTGATGTGGTGACAGAAGCAGAAGAAAAAAAGAGGAGCAGCAGGAGCAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

237

Amino Acids

27.11

Weight (kDa)

4.79

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40160 AT5G40160
fragaria_vesca	FvH4_5g31250 FvH4_5g31250 FvH4_5g31250
malus_domestica	MD05G1026500.v1.1
prunus_persica	Prupe.3G132600_v2.0.a1
pyrus_communis	pycom05g01830
rosa_chinensis	RchiOBHm_Chr7g0226491
rosa_laevigata	RLG00000001726
rosa_multiflora	Rmu_sc0001423.1_g000067 Rmu_sc0001470.1_g000013
rosa_rugosa	Rorug07G0237500
rosa_samantha	Rh4CG052600 Rh7AG384700 Rh7BG371500 Rh7CG404000 Rh7DG383700
rosa_wichuraiana	Rw4G003890 Rw7G032310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	570
AciI	CCGC	2 cut(s)	225, 394
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	604
AfiI	CCNNNNNNNGG	2 cut(s)	302, 570
AgsI	TTSAA	2 cut(s)	163, 652
AluBI	AGCT	6 cut(s)	121, 166, 404, 523, 583, 645
AluI	AGCT	6 cut(s)	121, 166, 404, 523, 583, 645
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	2 cut(s)	50, 276
AoxI	GGCC	2 cut(s)	71, 87
ApeKI	GCWGC	4 cut(s)	118, 266, 404, 696
ApoI	RAATTY	1 cut(s)	604
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	428, 679
AvaII	GGWCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	400
BauI	CACGAG	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	4 cut(s)	130, 253, 391, 708
BccI	CCATC	2 cut(s)	296, 489
BcoDI	GTCTC	2 cut(s)	50, 276
BfaI	CTAG	2 cut(s)	62, 501
BfoI	RGCGCY	1 cut(s)	132
BisI	GCNGC	4 cut(s)	119, 267, 405, 697
BlsI	GCNGC	4 cut(s)	120, 268, 406, 698
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 570
Bse1I	ACTGG	2 cut(s)	546, 599
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	302, 570
BseMII	CTCAG	2 cut(s)	45, 312
BseNI	ACTGG	2 cut(s)	546, 599
BseRI	GAGGAG	4 cut(s)	338, 341, 344, 706
BseXI	GCAGC	4 cut(s)	130, 253, 391, 708
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	73, 89
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	206, 222
BslFI	GGGAC	2 cut(s)	325, 567
BslI	CCNNNNNNNGG	2 cut(s)	302, 570
BsmAI	GTCTC	2 cut(s)	50, 276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	325, 567
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	2 cut(s)	73, 89
Bsp1286I	GDGCHC	2 cut(s)	400, 541
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	2 cut(s)	225, 394
BspANI	GGCC	2 cut(s)	73, 89
BspCNI	CTCAG	2 cut(s)	46, 313
BspLI	GGNNCC	1 cut(s)	399
BspQI	GCTCTTC	2 cut(s)	444, 507
BsrI	ACTGG	2 cut(s)	546, 599
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	75
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	2 cut(s)	444, 507
BstC8I	GCNNGC	2 cut(s)	396, 707
BstDEI	CTNAG	3 cut(s)	54, 132, 321
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	2 cut(s)	50, 276
BstMBI	GATC	1 cut(s)	75
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 172, 404, 410, 702
BstNSI	RCATGY	1 cut(s)	560
BstV1I	GCAGC	4 cut(s)	130, 253, 391, 708
BsuRI	GGCC	2 cut(s)	73, 89
BtsI	GCAGTG	2 cut(s)	313, 538
BtsIMutI	CAGTG	5 cut(s)	35, 313, 538, 539, 592
Cac8I	GCNNGC	2 cut(s)	396, 707
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	2 cut(s)	181, 258
CviAII	CATG	4 cut(s)	109, 285, 350, 557
DdeI	CTNAG	3 cut(s)	54, 132, 321
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	444, 507
EarI	CTCTTC	2 cut(s)	444, 507
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	112, 288, 353, 560
FaiI	YATR	8 cut(s)	110, 236, 286, 351, 558, 571, 628, 630
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 441, 473
FaqI	GGGAC	2 cut(s)	325, 567
FatI	CATG	4 cut(s)	108, 284, 349, 556
FauI	CCCGC	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	119, 267, 405, 697
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	4 cut(s)	119, 267, 405, 697
FspBI	CTAG	2 cut(s)	62, 501
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	4 cut(s)	119, 267, 405, 697
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	73, 89
HapII	CCGG	2 cut(s)	206, 222
HgaI	GACGC	2 cut(s)	181, 258
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	112, 288, 353, 560
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	4 cut(s)	11, 58, 218, 317
HpaII	CCGG	2 cut(s)	206, 222
HphI	GGTGA	2 cut(s)	428, 679
Hpy166II	GTNNAC	3 cut(s)	21, 171, 432
Hpy188I	TCNGA	6 cut(s)	31, 55, 255, 322, 426, 492
Hpy188III	TCNNGA	3 cut(s)	296, 479, 649
Hpy8I	GTNNAC	3 cut(s)	21, 171, 432
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	100, 284
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	550
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 172, 404, 410, 702
HpyF3I	CTNAG	3 cut(s)	54, 132, 321
Hsp92II	CATG	4 cut(s)	112, 288, 353, 560
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	2 cut(s)	444, 507
LmnI	GCTCC	5 cut(s)	403, 536, 573, 693, 702
Lsp1109I	GCAGC	4 cut(s)	130, 253, 391, 708
MaeI	CTAG	2 cut(s)	62, 501
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	400, 541
MluCI	AATT	2 cut(s)	151, 604
MlyI	GAGTC	3 cut(s)	20, 52, 227
MnlI	CCTC	8 cut(s)	116, 136, 316, 319, 322, 325, 571, 684
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	404, 583
MspI	CCGG	2 cut(s)	206, 222
Mva1269I	GAATGC	1 cut(s)	618
MwoI	GCNNNNNNNGC	5 cut(s)	118, 172, 404, 410, 702
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	4 cut(s)	112, 288, 353, 560
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	1 cut(s)	560
PciSI	GCTCTTC	2 cut(s)	444, 507
PctI	GAATGC	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	570
PkrI	GCNGC	4 cut(s)	120, 268, 406, 698
Ple19I	CGATCG	1 cut(s)	78
PleI	GAGTC	3 cut(s)	19, 52, 226
PpsI	GAGTC	3 cut(s)	19, 52, 226
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	78
PvuII	CAGCTG	2 cut(s)	404, 583
SapI	GCTCTTC	2 cut(s)	444, 507
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	4 cut(s)	119, 267, 405, 697
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	3 cut(s)	20, 52, 227
SduI	GDGCHC	2 cut(s)	400, 541
SetI	ASST	9 cut(s)	26, 108, 123, 168, 295, 406, 525, 585, 647
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	2 cut(s)	151, 604
SsiI	CCGC	2 cut(s)	225, 394
SspMI	CTAG	2 cut(s)	62, 501
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	78
TasI	AATT	2 cut(s)	151, 604
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	5 cut(s)	42, 313, 538, 546, 599
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	4 cut(s)	118, 266, 404, 696
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	5 cut(s)	42, 313, 538, 546, 599
Van91I	CCANNNNNTGG	1 cut(s)	570
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	1 cut(s)	560
XspI	CTAG	2 cut(s)	62, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.