Rmu_sc0001470.1_g000013

Ankyrin repeat domain-containing protein EMB506

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001470.1
OG0011420
Physical Location & Seq
Reverse (-)
75467 .. 77418
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001470.1_g000013.1.cds

Sequence Viewer

Length: 1023 bp
atgggcatggtttcaataccagcattctcagctgtacagtcagtctctatacccagagattatcattcgtttgcggttgtgaactctttgaaggccaaggggaagagttgtcaactagaattgcatagtaataccagtgtcttgaaagcatatagtatatggagtggtggcagctttagctcctctgacaagcattcaaagttgaggacctttttggtcgagtcaaaccaagcatcttcgttacagtctcgtgtgggaacatgggaaggtcctgatgatggcagtgggactgaatctgaggaggaggaggaggaagaagaagaacttgacttgggtttccaaagcgaatgggaagaagatgaagaaaagcgggctccagctgctaatgctggtgatgttcagaagtccacaacaaatgagttagaagagcaacttgtgaaagaggtggaacagctcttggaggtagaagaaagagcaattttgcaaaagcatgcagctcccaacatggagaaattatcaactgcaaaatggagtccactacatactctttcactatctgggctagttactttcatggataagctacttgaagatggtgtagatattaatcgttttgataatgatggtgtaaccgctcttcatactgcaatcataggcaaaaaagaagctgttattagtcatcttctaagaaaaggtgcaagtcctcatgtcagagatcgggatggcgctacaccacttcattatgcagttcacgtaggcaccaagcgaattgtgaagttattgatcaaatacaaagttgatgtcaacattgcagataatgatggatggacgccattgcatgttgccgtgcaaagtagaaatagagatattgtgaaacttttgttagtgaatggtgcagataagagtagaagaaataaggatggcagaactcccatagatctgggcttgtgttatgggaaagacttcaagtcctatgacctcaccaagttactgaagacagtaccaatggacagagatttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

340

Amino Acids

37.74

Weight (kDa)

5.54

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40160 AT5G40160
fragaria_vesca FvH4_5g31250 FvH4_5g31250 FvH4_5g31250
malus_domestica MD05G1026500.v1.1
prunus_persica Prupe.3G132600_v2.0.a1
pyrus_communis pycom05g01830
rosa_chinensis RchiOBHm_Chr7g0226491
rosa_laevigata RLG00000001726
rosa_multiflora Rmu_sc0001423.1_g000067 Rmu_sc0001470.1_g000013
rosa_rugosa Rorug07G0237500
rosa_samantha Rh4CG052600 Rh7AG384700 Rh7BG371500 Rh7CG404000 Rh7DG383700
rosa_wichuraiana Rw4G003890 Rw7G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 758
AccBSI CCGCTC 1 cut(s) 635
AciI CCGC 3 cut(s) 74, 370, 633
AcuI CTGAAG 1 cut(s) 1013
AcyI GRCGYC 1 cut(s) 830
AfaI GTAC 2 cut(s) 36, 1002
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 6 cut(s) 15, 91, 145, 198, 590, 967
AhdI GACNNNNNGTC 1 cut(s) 967
AluBI AGCT 8 cut(s) 32, 174, 180, 380, 454, 497, 583, 668
AluI AGCT 8 cut(s) 32, 174, 180, 380, 454, 497, 583, 668
Alw26I GTCTC 2 cut(s) 49, 252
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 171, 380, 494
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
AseI ATTAAT 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 962
AspLEI GCGC 1 cut(s) 728
AspS9I GGNCC 2 cut(s) 207, 269
AsuHPI GGTGA 2 cut(s) 404, 973
AvaII GGWCC 2 cut(s) 207, 269
BanI GGYRCC 1 cut(s) 758
BanII GRGCYC 1 cut(s) 376
BarI GAAGNNNNNNTAC 2 cut(s) 621, 653
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 1001
BbvI GCAGC 3 cut(s) 183, 367, 506
BccI CCATC 7 cut(s) 272, 587, 617, 716, 815, 819, 914
BceAI ACGGC 1 cut(s) 830
BclI TGATCA 1 cut(s) 783
BcoDI GTCTC 2 cut(s) 49, 252
BfaI CTAG 2 cut(s) 116, 563
BfoI RGCGCY 1 cut(s) 729
BglII AGATCT 1 cut(s) 937
BisI GCNGC 3 cut(s) 172, 381, 495
BlsI GCNGC 3 cut(s) 173, 382, 496
Bme18I GGWCC 2 cut(s) 207, 269
BmeRI GACNNNNNGTC 1 cut(s) 967
BmgT120I GGNCC 2 cut(s) 207, 269
BmiI GGNNCC 2 cut(s) 375, 760
BmsI GCATC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 1001
BpmI CTGGAG 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 754
BsaBI GATNNNNATC 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 830
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 807, 833
Bse8I GATNNNNATC 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 3 cut(s) 727, 830, 925
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 2 cut(s) 807, 833
BseMII CTCAG 2 cut(s) 42, 288
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 5 cut(s) 172, 314, 317, 320, 323
BseXI GCAGC 3 cut(s) 183, 367, 506
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 758
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 2 cut(s) 49, 252
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 2 cut(s) 23, 193
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 3 cut(s) 715, 783, 937
BspACI CCGC 3 cut(s) 74, 370, 633
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 41, 289
BspLI GGNNCC 2 cut(s) 375, 760
BspQI GCTCTTC 2 cut(s) 420, 642
BspT107I GGYRCC 1 cut(s) 758
BsrBI CCGCTC 1 cut(s) 635
BsrDI GCAATG 2 cut(s) 807, 833
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 715, 783, 937
BssNI GRCGYC 1 cut(s) 830
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 39, 246, 1000
Bst6I CTCTTC 3 cut(s) 98, 420, 642
BstACI GRCGYC 1 cut(s) 830
BstAUI TGTACA 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 754
BstC8I GCNNGC 2 cut(s) 372, 492
BstDEI CTNAG 3 cut(s) 28, 297, 686
BstF5I GGATG 3 cut(s) 727, 830, 925
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 3 cut(s) 718, 786, 940
BstMAI GTCTC 2 cut(s) 49, 252
BstMBI GATC 3 cut(s) 715, 783, 937
BstMWI GCNNNNNNNGC 4 cut(s) 29, 177, 380, 386
BstNSI RCATGY 2 cut(s) 494, 842
BstV1I GCAGC 3 cut(s) 183, 367, 506
BstV2I GAAGAC 1 cut(s) 1001
BstX2I RGATCY 1 cut(s) 937
BstXI CCANNNNNNTGG 1 cut(s) 940
BstYI RGATCY 1 cut(s) 937
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 727, 830, 925
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 142, 289
Cac8I GCNNGC 2 cut(s) 372, 492
CfoI GCGC 1 cut(s) 728
Cfr13I GGNCC 2 cut(s) 207, 269
CseI GACGC 1 cut(s) 838
Csp6I GTAC 2 cut(s) 35, 1001
CviAII CATG 7 cut(s) 7, 261, 491, 505, 574, 707, 839
CviQI GTAC 2 cut(s) 35, 1001
DdeI CTNAG 3 cut(s) 28, 297, 686
DpnI GATC 3 cut(s) 717, 785, 939
DpnII GATC 3 cut(s) 715, 783, 937
DriI GACNNNNNGTC 1 cut(s) 967
Eam1104I CTCTTC 3 cut(s) 98, 420, 642
Eam1105I GACNNNNNGTC 1 cut(s) 967
EarI CTCTTC 3 cut(s) 98, 420, 642
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 207, 269
Eco57I CTGAAG 1 cut(s) 1013
EcoO109I RGGNCCY 2 cut(s) 207, 269
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 7 cut(s) 10, 264, 494, 508, 577, 710, 842
FalI AAGNNNNNCTT 4 cut(s) 309, 341, 417, 449
FaqI GGGAC 1 cut(s) 301
FatI CATG 7 cut(s) 6, 260, 490, 504, 573, 706, 838
FauI CCCGC 1 cut(s) 363
FbaI TGATCA 1 cut(s) 783
Fnu4HI GCNGC 3 cut(s) 172, 381, 495
FokI GGATG 3 cut(s) 734, 837, 932
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 3 cut(s) 172, 381, 495
FspBI CTAG 2 cut(s) 116, 563
GlaI GCGC 1 cut(s) 727
GluI GCNGC 3 cut(s) 172, 381, 495
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 1 cut(s) 95
HgaI GACGC 1 cut(s) 838
HhaI GCGC 1 cut(s) 728
Hin1I GRCGYC 1 cut(s) 830
Hin1II CATG 7 cut(s) 10, 264, 494, 508, 577, 710, 842
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HincII GTYRAC 2 cut(s) 113, 805
HindII GTYRAC 2 cut(s) 113, 805
HinfI GANTC 3 cut(s) 221, 293, 532
HphI GGTGA 2 cut(s) 404, 973
Hpy166II GTNNAC 6 cut(s) 82, 113, 408, 536, 751, 805
Hpy188I TCNGA 4 cut(s) 187, 298, 402, 713
Hpy188III TCNNGA 3 cut(s) 142, 272, 719
Hpy8I GTNNAC 6 cut(s) 82, 113, 408, 536, 751, 805
HpyAV CCTTC 2 cut(s) 85, 260
HpyCH4III ACNGT 3 cut(s) 39, 246, 1000
HpyCH4IV ACGT 1 cut(s) 753
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 177, 380, 386
HpyF3I CTNAG 3 cut(s) 28, 297, 686
HpySE526I ACGT 1 cut(s) 753
Hsp92I GRCGYC 1 cut(s) 830
Hsp92II CATG 7 cut(s) 10, 264, 494, 508, 577, 710, 842
HspAI GCGC 1 cut(s) 726
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 3 cut(s) 715, 783, 937
LguI GCTCTTC 2 cut(s) 420, 642
LmnI GCTCC 3 cut(s) 185, 379, 502
LpnPI CCDG 8 cut(s) 33, 67, 148, 285, 375, 390, 543, 926
Lsp1109I GCAGC 3 cut(s) 183, 367, 506
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 116, 563
MaeII ACGT 1 cut(s) 753
MaeIII GTNAC 4 cut(s) 240, 565, 628, 987
MalI GATC 3 cut(s) 717, 785, 939
MbiI CCGCTC 1 cut(s) 635
MboI GATC 3 cut(s) 715, 783, 937
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 4 cut(s) 119, 477, 512, 768
MlyI GAGTC 2 cut(s) 230, 541
MroXI GAANNNNTTC 1 cut(s) 962
MseI TTAA 1 cut(s) 606
MspA1I CMGCKG 2 cut(s) 32, 380
Mva1269I GAATGC 2 cut(s) 23, 193
MwoI GCNNNNNNNGC 4 cut(s) 29, 177, 380, 386
NdeII GATC 3 cut(s) 715, 783, 937
NlaIII CATG 7 cut(s) 10, 264, 494, 508, 577, 710, 842
NlaIV GGNNCC 2 cut(s) 375, 760
NspI RCATGY 2 cut(s) 494, 842
PaeI GCATGC 1 cut(s) 494
PciSI GCTCTTC 2 cut(s) 420, 642
PctI GAATGC 2 cut(s) 23, 193
PdmI GAANNNNTTC 1 cut(s) 962
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 173, 382, 496
PleI GAGTC 2 cut(s) 229, 540
PpsI GAGTC 2 cut(s) 229, 540
Ppu21I YACGTR 1 cut(s) 754
PpuMI RGGWCCY 2 cut(s) 207, 269
PshBI ATTAAT 1 cut(s) 606
Psp5II RGGWCCY 2 cut(s) 207, 269
PspN4I GGNNCC 2 cut(s) 375, 760
PspPI GGNCC 2 cut(s) 207, 269
PspPPI RGGWCCY 2 cut(s) 207, 269
PsuI RGATCY 1 cut(s) 937
PvuII CAGCTG 2 cut(s) 32, 380
RsaI GTAC 2 cut(s) 36, 1002
RsaNI GTAC 2 cut(s) 35, 1001
SapI GCTCTTC 2 cut(s) 420, 642
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 3 cut(s) 172, 381, 495
Sau3AI GATC 3 cut(s) 715, 783, 937
Sau96I GGNCC 2 cut(s) 207, 269
SchI GAGTC 2 cut(s) 230, 541
SduI GDGCHC 1 cut(s) 376
SfaNI GCATC 1 cut(s) 242
SinI GGWCC 2 cut(s) 207, 269
SphI GCATGC 1 cut(s) 494
Sse9I AATT 4 cut(s) 119, 477, 512, 768
SsiI CCGC 3 cut(s) 74, 370, 633
SspMI CTAG 2 cut(s) 116, 563
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 39, 246, 1000
TaiI ACGT 1 cut(s) 756
TaqI TCGA 1 cut(s) 219
TasI AATT 4 cut(s) 119, 477, 512, 768
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 2 cut(s) 142, 289
TseI GCWGC 3 cut(s) 171, 380, 494
TspDTI ATGAA 4 cut(s) 375, 562, 629, 728
TspRI CASTG 2 cut(s) 142, 289
VpaK11BI GGWCC 2 cut(s) 207, 269
VspI ATTAAT 1 cut(s) 606
XceI RCATGY 2 cut(s) 494, 842
XmnI GAANNNNTTC 1 cut(s) 962
XspI CTAG 2 cut(s) 116, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.