RchiOBHm_Chr7g0226491

Ankyrin repeat domain-containing protein EMB506

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011420
Physical Location & Seq
Reverse (-)
49690305 .. 49693672
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20286

Sequence Viewer

Length: 1026 bp
ATGGGCATGGTTTCAATACCAGCATTCTCAGCTGTACAGTCAGTCTCTATACCCAGAGATTATCATTCGTTTGCGGTTGTGAACTCTTTGAAGGCCAAGGGGAAGAGTTGTCAACTAGAATTGCTTAGTAATACCAGTGTCTTGAAAGCATATAGTATATGGAGTGGTGGCAGCTTTAGCTCCTCTGACAAGCATTCAAAGTTGAGGACCTTTTTGGTCAAGTCAAACCAAGCATCTTCGTTACAGTCTCGTGTGGGAACATGGGAAGGTCCTGATGATGGCAGTGGGACTGAATCTGAGGAGGAGGAGGAGGAGGAAGAAGAAGAACATGACTTGGGTTTCCAAAGCGAATGGGAAGAAGATGAAGAAAAGCGGGCTCCAGCTGCTAATGCTGGTGATGTTCAGAAGTCCACAACAAATGAGTTAGAAGAGCAACTTGTGAAAGAGGTGGAACAGCTCTTGGAGGTAGAAGAAAGAGCAATTTTGCAACAGCATGCAGCTCCCAACATGGAGAAATTATCAACTGCAAAATGGAGTCCACTACATACTCTTTCACTATCTGGGCTAGTTACTTTCATGGATAAGCTACTTGAAGATGGTGTAGATATTAATCGTTTTGATAATGATGGTGTAACCGCTCTTCATACTGCAATCATAGGCAAAAAAGAAGCTGTTATTAGTCATCTTCTAAGAAAAGGTGCAAGTCCTCATGTCAGAGATCGGGATGGCGCTGCACCACTTCATTATGCAATACACGTAGGCACCAAGCGAATTGTGAAGTTATTGATCAAATACAAAGTTGATGTCAACATTGCAGATAATGATGGATGGACGCCATTGCATGTTGCCGTGCAAAGTAGAAATAGAGATATTGTGAAACTTTTGTTAGTGAATGGTGCAGATAAGAGTAGAAGAAATAAGGATGGCAGAACTCCCATAGATCTGGGCTTGTGTTATGGGAAAGACTTCAAGTCCTATGACCTCACCAAGTTACTGAAGACAGTACCAATGGACAGAGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

341

Amino Acids

37.85

Weight (kDa)

5.54

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 164 - 240 3.2e-07 Ankyrin repeats (3 copies)
Ank_5 PF13857 196 - 250 6.3e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 224 - 305 1.3e-19 Ankyrin repeats (3 copies)
Ank_5 PF13857 229 - 283 8.7e-09 Ankyrin repeats (many copies)
Ank_4 PF13637 257 - 296 2.2e-08 Ankyrin repeats (many copies)
Ank_5 PF13857 274 - 315 3.9e-07 Ankyrin repeats (many copies)
Ank PF00023 275 - 307 2.5e-08 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40160 AT5G40160
fragaria_vesca FvH4_5g31250 FvH4_5g31250 FvH4_5g31250
malus_domestica MD05G1026500.v1.1
prunus_persica Prupe.3G132600_v2.0.a1
pyrus_communis pycom05g01830
rosa_chinensis RchiOBHm_Chr7g0226491
rosa_laevigata RLG00000001726
rosa_multiflora Rmu_sc0001423.1_g000067 Rmu_sc0001470.1_g000013
rosa_rugosa Rorug07G0237500
rosa_samantha Rh4CG052600 Rh7AG384700 Rh7BG371500 Rh7CG404000 Rh7DG383700
rosa_wichuraiana Rw4G003890 Rw7G032310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 761
AccBSI CCGCTC 1 cut(s) 638
AciI CCGC 3 cut(s) 74, 373, 636
AcuI CTGAAG 1 cut(s) 1016
AcyI GRCGYC 1 cut(s) 833
AfaI GTAC 2 cut(s) 36, 1005
AfiI CCNNNNNNNGG 1 cut(s) 278
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 6 cut(s) 15, 91, 145, 198, 593, 970
AhdI GACNNNNNGTC 1 cut(s) 970
AluBI AGCT 8 cut(s) 32, 174, 180, 383, 457, 500, 586, 671
AluI AGCT 8 cut(s) 32, 174, 180, 383, 457, 500, 586, 671
Alw26I GTCTC 2 cut(s) 49, 252
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 4 cut(s) 171, 383, 497, 731
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AseI ATTAAT 1 cut(s) 609
Asp700I GAANNNNTTC 1 cut(s) 965
AspLEI GCGC 1 cut(s) 731
AspS9I GGNCC 2 cut(s) 207, 269
AsuHPI GGTGA 2 cut(s) 407, 976
AvaII GGWCC 2 cut(s) 207, 269
BanI GGYRCC 1 cut(s) 761
BanII GRGCYC 1 cut(s) 379
BarI GAAGNNNNNNTAC 2 cut(s) 624, 656
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 1004
BbvI GCAGC 4 cut(s) 183, 370, 509, 718
BccI CCATC 7 cut(s) 272, 590, 620, 719, 818, 822, 917
BceAI ACGGC 1 cut(s) 833
BclI TGATCA 1 cut(s) 786
BcoDI GTCTC 2 cut(s) 49, 252
BfaI CTAG 2 cut(s) 116, 566
BfoI RGCGCY 1 cut(s) 732
BglII AGATCT 1 cut(s) 940
BisI GCNGC 4 cut(s) 172, 384, 498, 732
BlsI GCNGC 4 cut(s) 173, 385, 499, 733
Bme18I GGWCC 2 cut(s) 207, 269
BmeRI GACNNNNNGTC 1 cut(s) 970
BmgT120I GGNCC 2 cut(s) 207, 269
BmiI GGNNCC 2 cut(s) 378, 763
BmsI GCATC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 1004
BpmI CTGGAG 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 757
BsaBI GATNNNNATC 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 833
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 810, 836
Bse8I GATNNNNATC 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 3 cut(s) 730, 833, 928
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 2 cut(s) 810, 836
BseMII CTCAG 2 cut(s) 42, 288
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 6 cut(s) 172, 314, 317, 320, 323, 326
BseXI GCAGC 4 cut(s) 183, 370, 509, 718
BsgI GTGCAG 2 cut(s) 717, 918
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 761
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 2 cut(s) 49, 252
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 2 cut(s) 23, 193
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 379
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 3 cut(s) 718, 786, 940
BspACI CCGC 3 cut(s) 74, 373, 636
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 41, 289
BspLI GGNNCC 2 cut(s) 378, 763
BspQI GCTCTTC 2 cut(s) 423, 645
BspT107I GGYRCC 1 cut(s) 761
BsrBI CCGCTC 1 cut(s) 638
BsrDI GCAATG 2 cut(s) 810, 836
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 718, 786, 940
BssNI GRCGYC 1 cut(s) 833
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 39, 246, 1003
Bst6I CTCTTC 3 cut(s) 98, 423, 645
BstACI GRCGYC 1 cut(s) 833
BstAUI TGTACA 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 757
BstC8I GCNNGC 2 cut(s) 375, 495
BstDEI CTNAG 4 cut(s) 28, 125, 297, 689
BstF5I GGATG 3 cut(s) 730, 833, 928
BstH2I RGCGCY 1 cut(s) 732
BstHHI GCGC 1 cut(s) 731
BstKTI GATC 3 cut(s) 721, 789, 943
BstMAI GTCTC 2 cut(s) 49, 252
BstMBI GATC 3 cut(s) 718, 786, 940
BstMWI GCNNNNNNNGC 4 cut(s) 29, 177, 383, 389
BstNSI RCATGY 2 cut(s) 497, 845
BstV1I GCAGC 4 cut(s) 183, 370, 509, 718
BstV2I GAAGAC 1 cut(s) 1004
BstX2I RGATCY 1 cut(s) 940
BstXI CCANNNNNNTGG 1 cut(s) 943
BstYI RGATCY 1 cut(s) 940
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 730, 833, 928
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 142, 289
Cac8I GCNNGC 2 cut(s) 375, 495
CfoI GCGC 1 cut(s) 731
Cfr13I GGNCC 2 cut(s) 207, 269
CseI GACGC 1 cut(s) 841
Csp6I GTAC 2 cut(s) 35, 1004
CviAII CATG 8 cut(s) 7, 261, 329, 494, 508, 577, 710, 842
CviQI GTAC 2 cut(s) 35, 1004
DdeI CTNAG 4 cut(s) 28, 125, 297, 689
DpnI GATC 3 cut(s) 720, 788, 942
DpnII GATC 3 cut(s) 718, 786, 940
DriI GACNNNNNGTC 1 cut(s) 970
Eam1104I CTCTTC 3 cut(s) 98, 423, 645
Eam1105I GACNNNNNGTC 1 cut(s) 970
EarI CTCTTC 3 cut(s) 98, 423, 645
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 207, 269
Eco57I CTGAAG 1 cut(s) 1016
EcoO109I RGGNCCY 2 cut(s) 207, 269
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 8 cut(s) 10, 264, 332, 497, 511, 580, 713, 845
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 301
FatI CATG 8 cut(s) 6, 260, 328, 493, 507, 576, 709, 841
FauI CCCGC 1 cut(s) 366
FbaI TGATCA 1 cut(s) 786
Fnu4HI GCNGC 4 cut(s) 172, 384, 498, 732
FokI GGATG 3 cut(s) 737, 840, 935
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 4 cut(s) 172, 384, 498, 732
FspBI CTAG 2 cut(s) 116, 566
GlaI GCGC 1 cut(s) 730
GluI GCNGC 4 cut(s) 172, 384, 498, 732
GsuI CTGGAG 1 cut(s) 363
HaeII RGCGCY 1 cut(s) 732
HaeIII GGCC 1 cut(s) 95
HgaI GACGC 1 cut(s) 841
HhaI GCGC 1 cut(s) 731
Hin1I GRCGYC 1 cut(s) 833
Hin1II CATG 8 cut(s) 10, 264, 332, 497, 511, 580, 713, 845
Hin6I GCGC 1 cut(s) 729
HinP1I GCGC 1 cut(s) 729
HincII GTYRAC 2 cut(s) 113, 808
HindII GTYRAC 2 cut(s) 113, 808
HinfI GANTC 2 cut(s) 293, 535
HphI GGTGA 2 cut(s) 407, 976
Hpy166II GTNNAC 5 cut(s) 82, 113, 411, 539, 808
Hpy188I TCNGA 4 cut(s) 187, 298, 405, 716
Hpy188III TCNNGA 3 cut(s) 142, 272, 722
Hpy8I GTNNAC 5 cut(s) 82, 113, 411, 539, 808
HpyAV CCTTC 2 cut(s) 85, 260
HpyCH4III ACNGT 3 cut(s) 39, 246, 1003
HpyCH4IV ACGT 1 cut(s) 756
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 177, 383, 389
HpyF3I CTNAG 4 cut(s) 28, 125, 297, 689
HpySE526I ACGT 1 cut(s) 756
Hsp92I GRCGYC 1 cut(s) 833
Hsp92II CATG 8 cut(s) 10, 264, 332, 497, 511, 580, 713, 845
HspAI GCGC 1 cut(s) 729
Ksp22I TGATCA 1 cut(s) 786
Kzo9I GATC 3 cut(s) 718, 786, 940
LguI GCTCTTC 2 cut(s) 423, 645
LmnI GCTCC 3 cut(s) 185, 382, 505
LpnPI CCDG 8 cut(s) 33, 67, 148, 285, 378, 393, 546, 929
Lsp1109I GCAGC 4 cut(s) 183, 370, 509, 718
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 116, 566
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 4 cut(s) 240, 568, 631, 990
MalI GATC 3 cut(s) 720, 788, 942
MbiI CCGCTC 1 cut(s) 638
MboI GATC 3 cut(s) 718, 786, 940
MflI RGATCY 1 cut(s) 940
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 4 cut(s) 119, 480, 515, 771
MlyI GAGTC 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 965
MseI TTAA 1 cut(s) 609
MspA1I CMGCKG 2 cut(s) 32, 383
Mva1269I GAATGC 2 cut(s) 23, 193
MwoI GCNNNNNNNGC 4 cut(s) 29, 177, 383, 389
NdeII GATC 3 cut(s) 718, 786, 940
NlaIII CATG 8 cut(s) 10, 264, 332, 497, 511, 580, 713, 845
NlaIV GGNNCC 2 cut(s) 378, 763
NspI RCATGY 2 cut(s) 497, 845
PaeI GCATGC 1 cut(s) 497
PciSI GCTCTTC 2 cut(s) 423, 645
PctI GAATGC 2 cut(s) 23, 193
PdmI GAANNNNTTC 1 cut(s) 965
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 4 cut(s) 173, 385, 499, 733
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
Ppu21I YACGTR 1 cut(s) 757
PpuMI RGGWCCY 2 cut(s) 207, 269
PshBI ATTAAT 1 cut(s) 609
Psp5II RGGWCCY 2 cut(s) 207, 269
PspN4I GGNNCC 2 cut(s) 378, 763
PspPI GGNCC 2 cut(s) 207, 269
PspPPI RGGWCCY 2 cut(s) 207, 269
PsuI RGATCY 1 cut(s) 940
PvuII CAGCTG 2 cut(s) 32, 383
RsaI GTAC 2 cut(s) 36, 1005
RsaNI GTAC 2 cut(s) 35, 1004
SapI GCTCTTC 2 cut(s) 423, 645
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 4 cut(s) 172, 384, 498, 732
Sau3AI GATC 3 cut(s) 718, 786, 940
Sau96I GGNCC 2 cut(s) 207, 269
SchI GAGTC 1 cut(s) 544
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 1 cut(s) 242
SinI GGWCC 2 cut(s) 207, 269
SphI GCATGC 1 cut(s) 497
Sse9I AATT 4 cut(s) 119, 480, 515, 771
SsiI CCGC 3 cut(s) 74, 373, 636
SspMI CTAG 2 cut(s) 116, 566
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 39, 246, 1003
TaiI ACGT 1 cut(s) 759
TasI AATT 4 cut(s) 119, 480, 515, 771
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 2 cut(s) 142, 289
TseI GCWGC 4 cut(s) 171, 383, 497, 731
TspDTI ATGAA 4 cut(s) 378, 565, 632, 731
TspRI CASTG 2 cut(s) 142, 289
VpaK11BI GGWCC 2 cut(s) 207, 269
VspI ATTAAT 1 cut(s) 609
XceI RCATGY 2 cut(s) 497, 845
XmnI GAANNNNTTC 1 cut(s) 965
XspI CTAG 2 cut(s) 116, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.