Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006519

Physical Location & Seq

Genomic Coordinates Forward (+)

16294967 .. 16297058

Gene Structure 2092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGAAGATCGAATTCTCAATGCCCATCTCATTGGATTCTCCTCTGCTTCTTCATCTCTTCTCAGTTTTGGGGATTCTCACTTCCCACTTCGATAATTCAACAAAATCTCGAGGGTTTTAAAGATCCTGAAGACGGTTTTCATGAGATTCATTGTTCAAGAGAACGTAGCAGAGTTGCTTGGAAAATCATTCAAGAGTATCTCATGCCGTATGTGGAAAAGGAGCGGTATCAGTTACCGAGTACTTGTAGAGTTCATCGAGACAATGACATTTATAGAGAACAAGAAGAGCACAAATTGCGTTCAGATATTAATGAGTGGCGTTGTGGATTCTGCAAAAAGGCTTTTTATGAAGAGAAGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTACTTAATGCGAGTCATGGTAAATGTCTGTCGGATCTTTGTGGAGCGTTGCATTGTGATCTTGTTGTAGACACAGCTCGGCTTAAGTCCAAGTGTAATCCTGCAGCTGCTGCAAAAAACCGGCACTTATGTGAGAGTTTGGCTAATAGTTGTTTTCCGGTAAATAAAGGTTCATCAGCCAACCGTCTTCACGATTTCTTCTTGCGTCAGTTCTGCGATGCACATACATGTTCAGGAGGATCAAAGCCCTTATCTCAAAAACCAAAGAAGAGGAGTATAGTGTACATTATTTTCTCCATCATCGTTTTGGTAGTGCTTCTTCTCTATTACAGCTTTGTCTATTTGTTCCGAAGAGGATTAAAGAGAAGATCTCAAGATTTGAAGCGTATTAGACACAATGGTCTGAAGAAGAAACCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

31.89

Weight (kDa)

9.36

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40710 AT5G40710
fragaria_vesca	FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420
malus_domestica	MD09G1018200.v1.1
prunus_persica	Prupe.3G298900_v2.0.a1 Prupe.3G298900_v2.0.a1
pyrus_communis	pycom111g01520
rosa_chinensis	RchiOBHm_Chr2g0174061
rosa_laevigata	RLG00000022241
rosa_multiflora	Rmu_sc0003188.1_g000033 Rmu_sc0041487.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078490
rosa_rugosa	Rorug02G0574300 Rorug02G0574400 Rorug02G0574500
rosa_samantha	Rh2AG653700 Rh2BG665000 Rh2CG629300 Rh2DG679700
rosa_wichuraiana	Rw2G053680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	795
AccBSI	CCGCTC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	465
AccII	CGCG	1 cut(s)	385
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	3 cut(s)	119, 438, 643
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	244, 680
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflII	CTTAAG	1 cut(s)	479
AflIII	ACRYGT	1 cut(s)	623
AgsI	TTSAA	4 cut(s)	101, 159, 194, 778
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	3 cut(s)	473, 503, 729
AluI	AGCT	3 cut(s)	473, 503, 729
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	3 cut(s)	119, 438, 643
AlwNI	CAGNNNCTG	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	110
ApeKI	GCWGC	3 cut(s)	500, 503, 506
ApoI	RAATTY	1 cut(s)	13
AseI	ATTAAT	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	812
AspLEI	GCGC	1 cut(s)	387
AvaI	CYCGRG	1 cut(s)	110
BarI	GAAGNNNNNNTAC	2 cut(s)	699, 731
BbsI	GAAGAC	2 cut(s)	138, 575
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	490, 493, 512
BccI	CCATC	2 cut(s)	34, 701
BceAI	ACGGC	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	498
BfrI	CTTAAG	1 cut(s)	479
BglII	AGATCT	1 cut(s)	764
BisI	GCNGC	3 cut(s)	501, 504, 507
BlsI	GCNGC	3 cut(s)	502, 505, 508
BmcAI	AGTACT	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	604
BpiI	GAAGAC	2 cut(s)	138, 575
BplI	GAGNNNNNCTC	2 cut(s)	751, 783
BpuEI	CTTGAG	1 cut(s)	753
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	516
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	32, 682
BseXI	GCAGC	3 cut(s)	490, 493, 512
Bsh1236I	CGCG	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	517, 554
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	6 cut(s)	8, 124, 430, 454, 635, 764
BspACI	CCGC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	385
BspHI	TCATGA	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	3 cut(s)	119, 438, 643
BspQI	GCTCTTC	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	479
BsrBI	CCGCTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	516
BsrGI	TGTACA	1 cut(s)	678
BssAI	RCCGGY	1 cut(s)	516
BssMI	GATC	6 cut(s)	8, 124, 430, 454, 635, 764
Bst4CI	ACNGT	2 cut(s)	137, 581
Bst6I	CTCTTC	5 cut(s)	64, 282, 348, 659, 742
BstAFI	CTTAAG	1 cut(s)	479
BstAPI	GCANNNNNTGC	2 cut(s)	298, 506
BstAUI	TGTACA	1 cut(s)	678
BstDEI	CTNAG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	6 cut(s)	11, 127, 433, 457, 638, 767
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	6 cut(s)	8, 124, 430, 454, 635, 764
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 506
BstNSI	RCATGY	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	3 cut(s)	490, 493, 512
BstV2I	GAAGAC	2 cut(s)	138, 575
BstX2I	RGATCY	3 cut(s)	124, 430, 764
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	3 cut(s)	124, 430, 764
BtgZI	GCGATG	1 cut(s)	627
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	516
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	243, 679
CviAII	CATG	4 cut(s)	143, 205, 413, 624
CviJI	RGCY	8 cut(s)	344, 473, 478, 503, 539, 575, 643, 729
CviKI_1	RGCY	8 cut(s)	344, 473, 478, 503, 539, 575, 643, 729
CviQI	GTAC	2 cut(s)	243, 679
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	6 cut(s)	10, 126, 432, 456, 637, 766
DpnII	GATC	6 cut(s)	8, 124, 430, 454, 635, 764
DraI	TTTAAA	1 cut(s)	121
DrdI	GACNNNNNNGTC	1 cut(s)	795
DseDI	GACNNNNNNGTC	1 cut(s)	795
Eam1104I	CTCTTC	5 cut(s)	64, 282, 348, 659, 742
EarI	CTCTTC	5 cut(s)	64, 282, 348, 659, 742
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	13
FaeI	CATG	4 cut(s)	146, 208, 416, 627
FalI	AAGNNNNNCTT	1 cut(s)	797
FatI	CATG	4 cut(s)	142, 204, 412, 623
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	3 cut(s)	501, 504, 507
Fsp4HI	GCNGC	3 cut(s)	501, 504, 507
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	3 cut(s)	501, 504, 507
HapII	CCGG	2 cut(s)	517, 554
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	4 cut(s)	146, 208, 416, 627
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	6 cut(s)	37, 75, 148, 330, 380, 409
HpaII	CCGG	2 cut(s)	517, 554
Hpy166II	GTNNAC	2 cut(s)	466, 679
Hpy188I	TCNGA	4 cut(s)	307, 430, 746, 801
Hpy8I	GTNNAC	2 cut(s)	466, 679
HpyCH4III	ACNGT	2 cut(s)	137, 581
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	5 cut(s)	336, 448, 500, 509, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 506
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	146, 208, 416, 627
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	6 cut(s)	8, 124, 430, 454, 635, 764
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	223, 440
LpnPI	CCDG	5 cut(s)	141, 510, 530, 567, 615
Lsp1109I	GCAGC	3 cut(s)	490, 493, 512
LweI	GCATC	1 cut(s)	604
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	6 cut(s)	10, 126, 432, 456, 637, 766
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	6 cut(s)	8, 124, 430, 454, 635, 764
MflI	RGATCY	3 cut(s)	124, 430, 764
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	4 cut(s)	13, 96, 296, 394
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	53, 106, 626, 660, 743
MroXI	GAANNNNTTC	1 cut(s)	812
MseI	TTAA	5 cut(s)	120, 312, 402, 480, 755
MslI	CAYNNNNRTG	2 cut(s)	525, 622
MspA1I	CMGCKG	1 cut(s)	503
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	2 cut(s)	517, 554
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	2 cut(s)	298, 506
NdeII	GATC	6 cut(s)	8, 124, 430, 454, 635, 764
NlaIII	CATG	4 cut(s)	146, 208, 416, 627
NmeAIII	GCCGAG	1 cut(s)	454
NspI	RCATGY	1 cut(s)	627
OliI	CACNNNNGTG	1 cut(s)	525
PaeR7I	CTCGAG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	623
PciSI	GCTCTTC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	5 cut(s)	37, 75, 148, 330, 380
PkrI	GCNGC	3 cut(s)	502, 505, 508
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PscI	ACATGT	1 cut(s)	623
PshBI	ATTAAT	1 cut(s)	312
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	3 cut(s)	124, 430, 764
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	2 cut(s)	244, 680
RsaNI	GTAC	2 cut(s)	243, 679
RseI	CAYNNNNRTG	2 cut(s)	525, 622
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	5 cut(s)	120, 312, 402, 480, 755
SatI	GCNGC	3 cut(s)	501, 504, 507
Sau3AI	GATC	6 cut(s)	8, 124, 430, 454, 635, 764
ScaI	AGTACT	1 cut(s)	244
SchI	GAGTC	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	5 cut(s)	169, 475, 505, 568, 731
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	498
Sfr274I	CTCGAG	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	525, 622
SmlI	CTYRAG	3 cut(s)	110, 479, 768
SmoI	CTYRAG	3 cut(s)	110, 479, 768
Sse9I	AATT	4 cut(s)	13, 96, 296, 394
SsiI	CCGC	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	137, 581
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	6 cut(s)	11, 92, 111, 259, 366, 378
TasI	AATT	4 cut(s)	13, 96, 296, 394
TatI	WGTACW	2 cut(s)	242, 678
TfiI	GAWTC	5 cut(s)	37, 75, 148, 330, 380
Tru1I	TTAA	5 cut(s)	120, 312, 402, 480, 755
Tru9I	TTAA	5 cut(s)	120, 312, 402, 480, 755
TseI	GCWGC	3 cut(s)	500, 503, 506
TspDTI	ATGAA	6 cut(s)	43, 131, 140, 245, 366, 558
Vha464I	CTTAAG	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	812
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.