Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006519

Physical Location & Seq

Genomic Coordinates Reverse (-)

1123006 .. 1125524

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1018200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAATGGCTTGGTCTTCTGTACCTGTTCTTATCGGTTTCTCTGCAATTCGGTGGTGTTTCTACAAAAAATCAGGGTCATGAGGATTCTGCAGCCACAAGAACTATAAAGAAAGAGCTGGGAGATCCACCGGAGGTACATTGTTCGAGAGAAAGGAGTAAGGCGGCATGGAAAATAATTCGGGAGTACTTGATGCCCTTTGTAGAGAAAGAGCGGTATCAGATTTCAAGAACATGTAAGCTGCACCCTGACAATGATCTGTACAGAGATCAGGAAGAGCACAAAATCCAAGTAGATTTAAACGAATGGCAATGTGGATATTGTAAAAAGAGATTTTATGACGACAAATTTCTCGATAAGCATTTTGACAACAGGCATTACAATTTGCTGAATGTGAGTCATACCAGGTGCTTGGCAGATGTTTGTGGTGCGTTGCATTGTGATCTCGAGATGGATTCTGTACCACCCAAGAAAACTAAGTGCAATCCTGCTGCTGCTGCACGGAATCGACATCTGTGTGAGGGTCTAGCTGATAGTTGTTTTCCAGTCAAACAGGGTCCAGCAGCAAGCCGTCTTCACGAGTTCTTCTTGCGCCAATTCTGTGATTCCCACACTTGTACTGGACGTCAAAAGCCCTTCTCTCGAGGCCGCAGGAAGAAGAGGGCGAGTATATCCTACCTTGTTATTTCCATTCTGACTCTGGCGTTGCTCTTCCTTTTCTACTCATACATTTACATGTACAGCAGGGGAGTGAAAAGAGGAACTCAAGAACTGAAGCGTGTCACGCCAATCGGAAGGAAGAAAAAACCGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

31.53

Weight (kDa)

9.5

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40710 AT5G40710
fragaria_vesca	FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420
malus_domestica	MD09G1018200.v1.1
prunus_persica	Prupe.3G298900_v2.0.a1 Prupe.3G298900_v2.0.a1
pyrus_communis	pycom111g01520
rosa_chinensis	RchiOBHm_Chr2g0174061
rosa_laevigata	RLG00000022241
rosa_multiflora	Rmu_sc0003188.1_g000033 Rmu_sc0041487.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078490
rosa_rugosa	Rorug02G0574300 Rorug02G0574400 Rorug02G0574500
rosa_samantha	Rh2AG653700 Rh2BG665000 Rh2CG629300 Rh2DG679700
rosa_wichuraiana	Rw2G053680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	628
AccBSI	CCGCTC	1 cut(s)	214
AciI	CCGC	3 cut(s)	164, 214, 649
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	794
AcyI	GRCGYC	1 cut(s)	625
AfaI	GTAC	7 cut(s)	23, 138, 188, 263, 462, 619, 740
AflIII	ACRYGT	2 cut(s)	233, 735
AgsI	TTSAA	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	404
AluBI	AGCT	3 cut(s)	118, 241, 530
AluI	AGCT	3 cut(s)	118, 241, 530
Alw21I	GWGCWC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	2 cut(s)	446, 642
AoxI	GGCC	1 cut(s)	646
ApeKI	GCWGC	6 cut(s)	92, 241, 491, 494, 497, 563
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	557
AvaI	CYCGRG	2 cut(s)	446, 642
AvaII	GGWCC	1 cut(s)	557
BauI	CACGAG	1 cut(s)	578
BbsI	GAAGAC	2 cut(s)	8, 566
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	6 cut(s)	104, 228, 478, 481, 484, 575
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	406
BfaI	CTAG	2 cut(s)	527, 814
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	8 cut(s)	93, 165, 242, 492, 495, 498, 564, 649
BlsI	GCNGC	8 cut(s)	94, 166, 243, 493, 496, 499, 565, 650
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	557
BmeT110I	CYCGRG	2 cut(s)	446, 642
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	2 cut(s)	8, 566
BpuEI	CTTGAG	1 cut(s)	750
BsaHI	GRCGYC	1 cut(s)	625
BsaWI	WCCGGW	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	545, 625
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	317
BseNI	ACTGG	2 cut(s)	545, 625
BseXI	GCAGC	6 cut(s)	104, 228, 478, 481, 484, 575
BseYI	CCCAGC	1 cut(s)	118
BsgI	GTGCAG	2 cut(s)	227, 483
BshFI	GGCC	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	2 cut(s)	446, 642
BsiSI	CCGG	1 cut(s)	131
BsnI	GGCC	1 cut(s)	648
BsoBI	CYCGRG	2 cut(s)	446, 642
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp1407I	TGTACA	2 cut(s)	261, 738
Bsp143I	GATC	4 cut(s)	124, 256, 268, 442
BspACI	CCGC	3 cut(s)	164, 214, 649
BspANI	GGCC	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	119
BspQI	GCTCTTC	2 cut(s)	270, 716
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	317
BsrGI	TGTACA	2 cut(s)	261, 738
BsrI	ACTGG	2 cut(s)	545, 625
BssMI	GATC	4 cut(s)	124, 256, 268, 442
BssNI	GRCGYC	1 cut(s)	625
BssSI	CACGAG	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	810
Bst6I	CTCTTC	3 cut(s)	270, 653, 716
BstACI	GRCGYC	1 cut(s)	625
BstAUI	TGTACA	2 cut(s)	261, 738
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	594
BstKTI	GATC	4 cut(s)	127, 259, 271, 445
BstMBI	GATC	4 cut(s)	124, 256, 268, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 784
BstNI	CCWGG	1 cut(s)	406
BstNSI	RCATGY	2 cut(s)	237, 739
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	6 cut(s)	104, 228, 478, 481, 484, 575
BstV2I	GAAGAC	2 cut(s)	8, 566
BstX2I	RGATCY	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	648
Cac8I	GCNNGC	1 cut(s)	568
CciI	TCATGA	1 cut(s)	79
CfoI	GCGC	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	557
CsiI	ACCWGGT	1 cut(s)	404
Csp6I	GTAC	7 cut(s)	22, 137, 187, 262, 461, 618, 739
CviAII	CATG	4 cut(s)	80, 168, 234, 736
CviJI	RGCY	8 cut(s)	10, 95, 118, 241, 530, 570, 634, 648
CviKI_1	RGCY	8 cut(s)	10, 95, 118, 241, 530, 570, 634, 648
CviQI	GTAC	7 cut(s)	22, 137, 187, 262, 461, 618, 739
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	4 cut(s)	126, 258, 270, 444
DpnII	GATC	4 cut(s)	124, 256, 268, 442
DraI	TTTAAA	1 cut(s)	300
Eam1104I	CTCTTC	3 cut(s)	270, 653, 716
EarI	CTCTTC	3 cut(s)	270, 653, 716
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	794
Eco88I	CYCGRG	2 cut(s)	446, 642
EcoRII	CCWGG	1 cut(s)	404
FaeI	CATG	4 cut(s)	83, 171, 237, 739
FaiI	YATR	9 cut(s)	81, 107, 169, 235, 339, 402, 671, 727, 737
FatI	CATG	4 cut(s)	79, 167, 233, 735
Fnu4HI	GCNGC	8 cut(s)	93, 165, 242, 492, 495, 498, 564, 649
Fsp4HI	GCNGC	8 cut(s)	93, 165, 242, 492, 495, 498, 564, 649
FspBI	CTAG	2 cut(s)	527, 814
GlaI	GCGC	1 cut(s)	593
GluI	GCNGC	8 cut(s)	93, 165, 242, 492, 495, 498, 564, 649
GsaI	CCCAGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	648
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	594
Hin1I	GRCGYC	1 cut(s)	625
Hin1II	CATG	4 cut(s)	83, 171, 237, 739
Hin6I	GCGC	1 cut(s)	592
HinP1I	GCGC	1 cut(s)	592
HinfI	GANTC	6 cut(s)	86, 397, 455, 505, 605, 697
HpaII	CCGG	1 cut(s)	131
Hpy188I	TCNGA	3 cut(s)	222, 696, 794
HpyAV	CCTTC	2 cut(s)	646, 789
HpyCH4III	ACNGT	1 cut(s)	810
HpyCH4IV	ACGT	1 cut(s)	625
HpyCH4V	TGCA	6 cut(s)	46, 92, 244, 436, 483, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 784
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	625
Hsp92I	GRCGYC	1 cut(s)	625
Hsp92II	CATG	4 cut(s)	83, 171, 237, 739
HspAI	GCGC	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	124, 256, 268, 442
LguI	GCTCTTC	2 cut(s)	270, 716
Lsp1109I	GCAGC	6 cut(s)	104, 228, 478, 481, 484, 575
LweI	GCATC	1 cut(s)	183
MabI	ACCWGGT	1 cut(s)	404
MaeI	CTAG	2 cut(s)	527, 814
MaeII	ACGT	1 cut(s)	625
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	4 cut(s)	126, 258, 270, 444
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	4 cut(s)	124, 256, 268, 442
MboII	GAAGA	8 cut(s)	8, 287, 566, 577, 667, 670, 703, 811
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	5 cut(s)	47, 177, 347, 382, 596
MlyI	GAGTC	2 cut(s)	406, 691
MnlI	CCTC	6 cut(s)	76, 127, 514, 638, 654, 752
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	2 cut(s)	516, 734
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	2 cut(s)	497, 784
NdeII	GATC	4 cut(s)	124, 256, 268, 442
NlaIII	CATG	4 cut(s)	83, 171, 237, 739
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	781
NspI	RCATGY	2 cut(s)	237, 739
PaeR7I	CTCGAG	2 cut(s)	446, 642
PagI	TCATGA	1 cut(s)	79
PciI	ACATGT	2 cut(s)	233, 735
PciSI	GCTCTTC	2 cut(s)	270, 716
PfeI	GAWTC	4 cut(s)	86, 455, 505, 605
PkrI	GCNGC	8 cut(s)	94, 166, 243, 493, 496, 499, 565, 650
PleI	GAGTC	2 cut(s)	405, 691
PpsI	GAGTC	2 cut(s)	405, 691
PscI	ACATGT	2 cut(s)	233, 735
Psp6I	CCWGG	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	557
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	7 cut(s)	23, 138, 188, 263, 462, 619, 740
RsaNI	GTAC	7 cut(s)	22, 137, 187, 262, 461, 618, 739
RseI	CAYNNNNRTG	2 cut(s)	516, 734
SapI	GCTCTTC	2 cut(s)	270, 716
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	8 cut(s)	93, 165, 242, 492, 495, 498, 564, 649
Sau3AI	GATC	4 cut(s)	124, 256, 268, 442
Sau96I	GGNCC	1 cut(s)	557
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	2 cut(s)	406, 691
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	8 cut(s)	27, 120, 138, 243, 410, 532, 628, 681
SexAI	ACCWGGT	1 cut(s)	404
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	90
Sfr274I	CTCGAG	2 cut(s)	446, 642
SinI	GGWCC	1 cut(s)	557
SlaI	CTCGAG	2 cut(s)	446, 642
SmiMI	CAYNNNNRTG	2 cut(s)	516, 734
SmlI	CTYRAG	3 cut(s)	446, 642, 765
SmoI	CTYRAG	3 cut(s)	446, 642, 765
Sse9I	AATT	5 cut(s)	47, 177, 347, 382, 596
SsiI	CCGC	3 cut(s)	164, 214, 649
SspMI	CTAG	2 cut(s)	527, 814
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	810
TaiI	ACGT	1 cut(s)	628
TaqI	TCGA	5 cut(s)	146, 354, 447, 508, 643
TasI	AATT	5 cut(s)	47, 177, 347, 382, 596
TatI	WGTACW	4 cut(s)	186, 261, 617, 738
TauI	GCSGC	2 cut(s)	167, 651
TfiI	GAWTC	4 cut(s)	86, 455, 505, 605
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	6 cut(s)	92, 241, 491, 494, 497, 563
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	2 cut(s)	237, 739
XcmI	CCANNNNNNNNNTGG	2 cut(s)	617, 697
XhoI	CTCGAG	2 cut(s)	446, 642
XspI	CTAG	2 cut(s)	527, 814
ZraI	GACGTC	1 cut(s)	626
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.