Prupe.3G298900_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0006519
Physical Location & Seq
Forward (+)
26448088 .. 26450572
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G298900.2

Sequence Viewer

Length: 864 bp
ATGAAGAAGAAGTTGTGTAAAATGAAATGGGTTGGTCTTCTGTTCCTGTGCTGCTTATCAGCGTCTCTGCAATTTTGTTTTGTTTCTTCAACTTCATCTCCTCAGCCTCTGATAACAAATCAGGGTCATCAAGAATCTGCAACCTCAAGAACTTTGAAGCAAGAGCTGGGAGATCCACCTGAGGTACATTGTTCTAGAGAAAGGAGTAGGGCAGCATGGAAAATAATTCAGGAGTACTTGATGCCCTTTGTAGAGAAAGAGCGGTATCAGATTCCAAGAACATGCAAGCTACACCCTAGCAATGACCTGTACAGAGATCAGGAAGAGCACAAAAGCCTTGTAGAATTCAACGATTGGCAATGTGGATATTGTAAGAAAAGATTTTATGACGAGAAATTTCTTGATAAGCATTTTGACAACAGGCACTACAATTTGCTGAATGTGAGTCATAGCAGGTGCTTGGCAAATGTTTGTGGTGCGTTGCATTGTGACCTCGCGATGGATTCTGTACCACACAAAAAGACTAAATGCAATCCTGCTGCTGCTGCGCGGAACAAACATCTGTGTGAGGGTCTAGCTGATAGTTGTTTTCCAGTCAGTAATGGTCCTTCAGCAAGCCGTCTTCATGAGTTCTTCTTGCGTCAATTCTGTGATGCCCACACTTGCACTGGAGGTCGAAAACCTTTCTCTCAAGGCCGCAGGAAGAAGAGGAGTAGTATATCCTACCTTGTTATTTCCATTCTGACTATGCTGCTGCTGCTGCTTTTCTATTCTTACATTTACATGTATAGAAGGGGAGTGAAAAGGGGAACTCAAGAACTGAAGCGTGTCACACAAAGTGGAAGGAAGAAAAAGCCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

33.26

Weight (kDa)

9.54

Isoelectric Point (pI)

57.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 444
AccBSI CCGCTC 1 cut(s) 262
AccII CGCG 2 cut(s) 497, 550
AciI CCGC 3 cut(s) 262, 550, 697
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 2 cut(s) 344, 395
AcuI CTGAAG 2 cut(s) 594, 842
AdeI CACNNNGTG 1 cut(s) 839
AfaI GTAC 4 cut(s) 186, 236, 311, 510
AfiI CCNNNNNNNGG 1 cut(s) 499
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 3 cut(s) 90, 157, 349
AluBI AGCT 3 cut(s) 166, 289, 578
AluI AGCT 3 cut(s) 166, 289, 578
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 1 cut(s) 694
ApeKI GCWGC 9 cut(s) 51, 212, 539, 542, 545, 751, 754, 757, 760
ApoI RAATTY 2 cut(s) 344, 395
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 605
AvaII GGWCC 1 cut(s) 605
AxyI CCTNAGG 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 592, 624
BbsI GAAGAC 2 cut(s) 29, 614
Bbv12I GWGCWC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 9 cut(s) 38, 224, 526, 529, 532, 738, 741, 744, 747
BccI CCATC 1 cut(s) 493
BceAI ACGGC 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 3 cut(s) 195, 297, 575
BfuAI ACCTGC 1 cut(s) 444
BmcAI AGTACT 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 605
BmgT120I GGNCC 1 cut(s) 605
BmsI GCATC 2 cut(s) 231, 643
BpiI GAAGAC 2 cut(s) 29, 614
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 3 cut(s) 130, 675, 798
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 2 cut(s) 593, 673
Bse21I CCTNAGG 1 cut(s) 180
Bse3DI GCAATG 2 cut(s) 307, 365
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 2 cut(s) 307, 365
BseMII CTCAG 2 cut(s) 116, 171
BseNI ACTGG 2 cut(s) 593, 673
BseRI GAGGAG 2 cut(s) 90, 724
BseXI GCAGC 9 cut(s) 38, 224, 526, 529, 532, 738, 741, 744, 747
BseYI CCCAGC 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 497, 550
BshFI GGCC 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 2 cut(s) 172, 316
Bsp68I TCGCGA 1 cut(s) 497
BspACI CCGC 3 cut(s) 262, 550, 697
BspANI GGCC 1 cut(s) 696
BspCNI CTCAG 2 cut(s) 115, 172
BspFNI CGCG 2 cut(s) 497, 550
BspHI TCATGA 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 318
BsrBI CCGCTC 1 cut(s) 262
BsrDI GCAATG 2 cut(s) 307, 365
BsrGI TGTACA 1 cut(s) 309
BsrI ACTGG 2 cut(s) 593, 673
BssMI GATC 2 cut(s) 172, 316
Bst6I CTCTTC 2 cut(s) 318, 701
BstAUI TGTACA 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 287, 616
BstDEI CTNAG 2 cut(s) 102, 180
BstFNI CGCG 2 cut(s) 497, 550
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 2 cut(s) 175, 319
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 2 cut(s) 172, 316
BstMWI GCNNNNNNNGC 3 cut(s) 545, 757, 760
BstNSI RCATGY 2 cut(s) 285, 787
BstUI CGCG 2 cut(s) 497, 550
BstV1I GCAGC 9 cut(s) 38, 224, 526, 529, 532, 738, 741, 744, 747
BstV2I GAAGAC 2 cut(s) 29, 614
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 696
BtgZI GCGATG 1 cut(s) 512
BtsIMutI CAGTG 1 cut(s) 666
BtuMI TCGCGA 1 cut(s) 497
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 287, 616
CaiI CAGNNNCTG 1 cut(s) 109
CciI TCATGA 1 cut(s) 625
CfoI GCGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 605
CseI GACGC 2 cut(s) 51, 629
Csp6I GTAC 4 cut(s) 185, 235, 310, 509
CviAII CATG 4 cut(s) 216, 282, 626, 784
CviJI RGCY 8 cut(s) 106, 166, 289, 336, 578, 618, 696, 856
CviKI_1 RGCY 8 cut(s) 106, 166, 289, 336, 578, 618, 696, 856
CviQI GTAC 4 cut(s) 185, 235, 310, 509
DdeI CTNAG 2 cut(s) 102, 180
DpnI GATC 2 cut(s) 174, 318
DpnII GATC 2 cut(s) 172, 316
DraIII CACNNNGTG 1 cut(s) 839
Eam1104I CTCTTC 2 cut(s) 318, 701
EarI CTCTTC 2 cut(s) 318, 701
Eco47I GGWCC 1 cut(s) 605
Eco57I CTGAAG 2 cut(s) 594, 842
Eco81I CCTNAGG 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 219, 285, 629, 787
FaiI YATR 9 cut(s) 217, 283, 387, 450, 627, 719, 749, 785, 789
FatI CATG 4 cut(s) 215, 281, 625, 783
FspBI CTAG 3 cut(s) 195, 297, 575
GlaI GCGC 1 cut(s) 549
GsaI CCCAGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 1 cut(s) 696
HgaI GACGC 2 cut(s) 51, 629
HhaI GCGC 1 cut(s) 550
Hin1II CATG 4 cut(s) 219, 285, 629, 787
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HinfI GANTC 4 cut(s) 134, 271, 445, 503
Hpy188I TCNGA 3 cut(s) 111, 270, 744
Hpy188III TCNNGA 9 cut(s) 131, 147, 195, 230, 320, 401, 496, 626, 815
HpyAV CCTTC 3 cut(s) 618, 786, 837
HpyCH4V TGCA 6 cut(s) 70, 140, 285, 484, 531, 666
HpyF10VI GCNNNNNNNGC 3 cut(s) 545, 757, 760
HpyF3I CTNAG 2 cut(s) 102, 180
Hsp92II CATG 4 cut(s) 219, 285, 629, 787
HspAI GCGC 1 cut(s) 548
Kzo9I GATC 2 cut(s) 172, 316
LguI GCTCTTC 1 cut(s) 318
Lsp1109I GCAGC 9 cut(s) 38, 224, 526, 529, 532, 738, 741, 744, 747
LweI GCATC 2 cut(s) 231, 643
MaeI CTAG 3 cut(s) 195, 297, 575
MaeIII GTNAC 2 cut(s) 488, 829
MalI GATC 2 cut(s) 174, 318
MbiI CCGCTC 1 cut(s) 262
MboI GATC 2 cut(s) 172, 316
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 6 cut(s) 71, 225, 344, 395, 430, 644
MlyI GAGTC 1 cut(s) 454
MnlI CCTC 8 cut(s) 111, 117, 154, 175, 503, 562, 665, 702
MslI CAYNNNNRTG 2 cut(s) 564, 782
MvnI CGCG 2 cut(s) 497, 550
MwoI GCNNNNNNNGC 3 cut(s) 545, 757, 760
NdeII GATC 2 cut(s) 172, 316
NlaIII CATG 4 cut(s) 219, 285, 629, 787
NmuCI GTSAC 2 cut(s) 488, 829
NruI TCGCGA 1 cut(s) 497
NspI RCATGY 2 cut(s) 285, 787
PagI TCATGA 1 cut(s) 625
PaqCI CACCTGC 1 cut(s) 444
PciI ACATGT 1 cut(s) 783
PciSI GCTCTTC 1 cut(s) 318
PfeI GAWTC 3 cut(s) 134, 271, 503
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
PscI ACATGT 1 cut(s) 783
PspFI CCCAGC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 605
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 172
RruI TCGCGA 1 cut(s) 497
RsaI GTAC 4 cut(s) 186, 236, 311, 510
RsaNI GTAC 4 cut(s) 185, 235, 310, 509
RseI CAYNNNNRTG 2 cut(s) 564, 782
SapI GCTCTTC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 172, 316
Sau96I GGNCC 1 cut(s) 605
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 1 cut(s) 454
SduI GDGCHC 1 cut(s) 330
SfaNI GCATC 2 cut(s) 231, 643
SinI GGWCC 1 cut(s) 605
SmiMI CAYNNNNRTG 2 cut(s) 564, 782
SmlI CTYRAG 3 cut(s) 145, 690, 813
SmoI CTYRAG 3 cut(s) 145, 690, 813
Sse9I AATT 6 cut(s) 71, 225, 344, 395, 430, 644
SsiI CCGC 3 cut(s) 262, 550, 697
SspMI CTAG 3 cut(s) 195, 297, 575
TaqI TCGA 1 cut(s) 676
TasI AATT 6 cut(s) 71, 225, 344, 395, 430, 644
TatI WGTACW 2 cut(s) 234, 309
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 3 cut(s) 134, 271, 503
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 2 cut(s) 488, 829
TseI GCWGC 9 cut(s) 51, 212, 539, 542, 545, 751, 754, 757, 760
Tsp45I GTSAC 2 cut(s) 488, 829
TspDTI ATGAA 4 cut(s) 17, 38, 84, 614
TspRI CASTG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 2 cut(s) 344, 395
XbaI TCTAGA 1 cut(s) 194
XceI RCATGY 2 cut(s) 285, 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XspI CTAG 3 cut(s) 195, 297, 575
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.