Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006519

Physical Location & Seq

Genomic Coordinates Forward (+)

87833749 .. 87836755

Gene Structure 3007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG665000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCCCTATGTAGAGAAAGAGCGGTATCAGATTCCGAGAACGTGTAGGCTGCACCCTGATAATGATCTGTACAGAGATCAGGAACAGCACAAAATCCGTATAGATATATATGAATGGCAGTGTGGATACTGTAAGAAGAGATTTTACGAGGAGAAGTTTCTTGACAAGCATTTTGACAACAGGCATCACAATTTGCTGAATGTGAGTCATAGTCGGTGCTTAGCAGATGTCTGTGGTGCGTTGCACTGTGATGTTGCAATGGGTGCTGCTCCACACAAGACCAAGTGCAATCCTGCTGCTGCTGCACGGAATAAACATCTGTGTGAGGGTCTAGCGGATAGTTGTTTTCCAGTCAATCAGGGTCCTTCAGCAAACCGTCTACATGAATTCTTCTTACGCCAATTCTGTGATGCCCTCACTTGCACTGGACGCCAGAAACCATTCTCTCAAGGACGCAAGAAGAAGAGGATGAGTATATCTTACATTGTTATTTCCGTTCTGACTTTGATGCTGCTGCTCCTTTACTATACTTATCTTTACATCTACAGAAGTGGAATTAAAAGGGGAACTCAAGAACTGAAACGAGTCTCACTTACGCAGAGTGGAAGGAAGAAAAAGCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

24.33

Weight (kDa)

9.52

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40710 AT5G40710
fragaria_vesca	FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420
malus_domestica	MD09G1018200.v1.1
prunus_persica	Prupe.3G298900_v2.0.a1 Prupe.3G298900_v2.0.a1
pyrus_communis	pycom111g01520
rosa_chinensis	RchiOBHm_Chr2g0174061
rosa_laevigata	RLG00000022241
rosa_multiflora	Rmu_sc0003188.1_g000033 Rmu_sc0041487.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078490
rosa_rugosa	Rorug02G0574300 Rorug02G0574400 Rorug02G0574500
rosa_samantha	Rh2AG653700 Rh2BG665000 Rh2CG629300 Rh2DG679700
rosa_wichuraiana	Rw2G053680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	379
AciI	CCGC	2 cut(s)	22, 335
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	592
ApeKI	GCWGC	7 cut(s)	49, 266, 296, 299, 302, 511, 514
ApoI	RAATTY	1 cut(s)	386
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	362
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BbvI	GCAGC	7 cut(s)	36, 253, 283, 286, 289, 498, 501
BciVI	GTATCC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	544
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	7 cut(s)	50, 267, 297, 300, 303, 512, 515
BlpI	GCTNAGC	1 cut(s)	220
BlsI	GCNGC	7 cut(s)	51, 268, 298, 301, 304, 513, 516
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	363
BmsI	GCATC	3 cut(s)	193, 400, 498
Bpu1102I	GCTNAGC	1 cut(s)	220
BpuEI	CTTGAG	2 cut(s)	432, 555
BsaBI	GATNNNNATC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	430
Bse1I	ACTGG	2 cut(s)	350, 430
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	63
BseGI	GGATG	1 cut(s)	474
BseJI	GATNNNNATC	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	350, 430
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	7 cut(s)	36, 253, 283, 286, 289, 498, 501
BsgI	GTGCAG	2 cut(s)	35, 288
BsmAI	GTCTC	1 cut(s)	592
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	64, 76
Bsp1720I	GCTNAGC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	22, 335
BspLI	GGNNCC	1 cut(s)	363
BsrBI	CCGCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	264
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	350, 430
BssMI	GATC	2 cut(s)	64, 76
BssNI	GRCGYC	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	131, 248, 377
Bst6I	CTCTTC	2 cut(s)	131, 458
BstACI	GRCGYC	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	220, 624
BstF5I	GGATG	1 cut(s)	474
BstKTI	GATC	2 cut(s)	67, 79
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	2 cut(s)	64, 76
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 302, 429
BstSFI	CTRYAG	1 cut(s)	544
BstV1I	GCAGC	7 cut(s)	36, 253, 283, 286, 289, 498, 501
BsuI	GTATCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	125, 244, 423
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	2 cut(s)	438, 462
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	2 cut(s)	49, 619
CviKI_1	RGCY	2 cut(s)	49, 619
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	220, 624
DpnI	GATC	2 cut(s)	66, 78
DpnII	GATC	2 cut(s)	64, 76
Eam1104I	CTCTTC	2 cut(s)	131, 458
EarI	CTCTTC	2 cut(s)	131, 458
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	386
FaeI	CATG	1 cut(s)	386
FaiI	YATR	9 cut(s)	9, 101, 107, 109, 111, 210, 384, 476, 528
FatI	CATG	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	7 cut(s)	50, 267, 297, 300, 303, 512, 515
FokI	GGATG	1 cut(s)	481
Fsp4HI	GCNGC	7 cut(s)	50, 267, 297, 300, 303, 512, 515
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	7 cut(s)	50, 267, 297, 300, 303, 512, 515
HgaI	GACGC	2 cut(s)	438, 462
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	1 cut(s)	386
HinfI	GANTC	3 cut(s)	31, 205, 585
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	3 cut(s)	30, 36, 501
Hpy188III	TCNNGA	3 cut(s)	80, 161, 572
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	375, 600
HpyCH4III	ACNGT	3 cut(s)	131, 248, 377
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	6 cut(s)	52, 244, 257, 288, 305, 423
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 302, 429
HpyF3I	CTNAG	2 cut(s)	220, 624
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	64, 76
LmnI	GCTCC	2 cut(s)	274, 522
LpnPI	CCDG	8 cut(s)	65, 69, 166, 306, 344, 363, 411, 446
Lsp1109I	GCAGC	7 cut(s)	36, 253, 283, 286, 289, 498, 501
LweI	GCATC	3 cut(s)	193, 400, 498
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	41
MalI	GATC	2 cut(s)	66, 78
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	2 cut(s)	64, 76
MboII	GAAGA	5 cut(s)	148, 382, 472, 475, 622
MluCI	AATT	4 cut(s)	190, 386, 401, 555
MlyI	GAGTC	2 cut(s)	214, 594
MnlI	CCTC	4 cut(s)	142, 319, 425, 459
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	249, 321
MwoI	GCNNNNNNNGC	3 cut(s)	263, 302, 429
NdeII	GATC	2 cut(s)	64, 76
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	7 cut(s)	51, 268, 298, 301, 304, 513, 516
PleI	GAGTC	2 cut(s)	213, 593
PpsI	GAGTC	2 cut(s)	213, 593
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	362
PspPPI	RGGWCCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	249, 321
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	7 cut(s)	50, 267, 297, 300, 303, 512, 515
Sau3AI	GATC	2 cut(s)	64, 76
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	214, 594
SetI	ASST	1 cut(s)	44
SfaNI	GCATC	3 cut(s)	193, 400, 498
SfcI	CTRYAG	1 cut(s)	544
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	2 cut(s)	249, 321
SmlI	CTYRAG	2 cut(s)	447, 570
SmoI	CTYRAG	2 cut(s)	447, 570
Sse9I	AATT	4 cut(s)	190, 386, 401, 555
SsiI	CCGC	2 cut(s)	22, 335
SspMI	CTAG	1 cut(s)	332
TaaI	ACNGT	3 cut(s)	131, 248, 377
TaiI	ACGT	1 cut(s)	44
TasI	AATT	4 cut(s)	190, 386, 401, 555
TatI	WGTACW	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	3 cut(s)	125, 251, 430
TseI	GCWGC	7 cut(s)	49, 266, 296, 299, 302, 511, 514
TspDTI	ATGAA	2 cut(s)	126, 399
TspGWI	ACGGA	3 cut(s)	86, 322, 484
TspRI	CASTG	3 cut(s)	125, 251, 430
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.