Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006519

Physical Location & Seq

Genomic Coordinates Reverse (-)

1772758 .. 1775421

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAGAAGGAATGGTGTAAACCCAAATGGGTTTCTCTTCTGTTCCTCTGTTTCTCACTATCTCTGCAATTTACTACTGTTTCTCCTCAGTCTCTGCCAACAGATCAGAACTATGAGGAATTTGCAACCACAAGGGGGGAGGCACCGGATATGGCCGAGGTACATTGTTCGAGAGAAAGGAGTAAGGCAGCATGGAAAGTAATTGAGGAGTATTTAATGCCCTATGTAGAGAAGGAGCGGTATCAGATTCCGAGAACGTGTAGGTTGCACCCTGATAATGATCTGTACAGAGATCAGGAACAGCACAAAATCGGTATAGATATATATGAATGGCAGTGTGGATACTGTAAGAAGAGATTTTACGAGGAGAAGTTTCTTGACAAGCATTTTGACAACAGGCATCACAATTTACTGAATTTGAGTCATAGTAGGTGCTTAGCAGATGTCTGTGGTGTGTTGCACTGTGATGTTGCAATGGGTGCTGCTCCACACAAGACCAAGTGCAATCCTGCTGCTGCTGCACGGAATAAACATCTGTGTGAGGGTCTAGCGGATAGTTGTTTTCCAGTCAATCAGGGTCCTTCAGCAAACCGTCTACATGAATTCTTCTTACGCCAATTCTGTGATGCCCTCAGTTGCACTGGACGCCAGAAACCATTCTCTCAAGGACGCAAGAAGAAGAGGATGAGTATATCTTACATTGTTATTTCCGTTCTGACTTTGATGCTGCTGCTCCTTTACTATACTTATCTTTACATCTACAGAAGCGGAATTAAAAGGGGAACTCAAGAACTGAAACGAGTCTCACTTATGCAAAGTGGAAGGAAGAAAAAGCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

32.69

Weight (kDa)

9.21

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40710 AT5G40710
fragaria_vesca	FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420
malus_domestica	MD09G1018200.v1.1
prunus_persica	Prupe.3G298900_v2.0.a1 Prupe.3G298900_v2.0.a1
pyrus_communis	pycom111g01520
rosa_chinensis	RchiOBHm_Chr2g0174061
rosa_laevigata	RLG00000022241
rosa_multiflora	Rmu_sc0003188.1_g000033 Rmu_sc0041487.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078490
rosa_rugosa	Rorug02G0574300 Rorug02G0574400 Rorug02G0574500
rosa_samantha	Rh2AG653700 Rh2BG665000 Rh2CG629300 Rh2DG679700
rosa_wichuraiana	Rw2G053680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	595
AciI	CCGC	3 cut(s)	238, 551, 768
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	3 cut(s)	119, 415, 602
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	646
AfaI	GTAC	2 cut(s)	162, 287
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflIII	ACRYGT	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	96, 808
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	7 cut(s)	188, 482, 512, 515, 518, 727, 730
ApoI	RAATTY	3 cut(s)	119, 415, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
Asp700I	GAANNNNTTC	1 cut(s)	656
AspS9I	GGNCC	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbvI	GCAGC	7 cut(s)	200, 469, 499, 502, 505, 714, 717
BciVI	GTATCC	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	96, 808
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	1 cut(s)	760
BfuI	GTATCC	1 cut(s)	335
BisI	GCNGC	7 cut(s)	189, 483, 513, 516, 519, 728, 731
BlpI	GCTNAGC	1 cut(s)	436
BlsI	GCNGC	7 cut(s)	190, 484, 514, 517, 520, 729, 732
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	144, 579
BmsI	GCATC	3 cut(s)	409, 616, 714
Bpu1102I	GCTNAGC	1 cut(s)	436
BpuEI	CTTGAG	2 cut(s)	648, 771
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	566, 646
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	690
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	101, 646
BseNI	ACTGG	2 cut(s)	566, 646
BseRI	GAGGAG	3 cut(s)	75, 221, 380
BseXI	GCAGC	7 cut(s)	200, 469, 499, 502, 505, 714, 717
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	96, 808
BsnI	GGCC	1 cut(s)	155
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	103, 280, 292
Bsp1720I	GCTNAGC	1 cut(s)	436
BspACI	CCGC	3 cut(s)	238, 551, 768
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	100, 645
BspLI	GGNNCC	2 cut(s)	144, 579
BspT107I	GGYRCC	1 cut(s)	142
BsrBI	CCGCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	480
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	566, 646
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	103, 280, 292
BssNI	GRCGYC	1 cut(s)	646
Bst4CI	ACNGT	4 cut(s)	79, 347, 464, 593
Bst6I	CTCTTC	3 cut(s)	42, 347, 674
BstACI	GRCGYC	1 cut(s)	646
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	285
BstDEI	CTNAG	4 cut(s)	87, 436, 632, 840
BstF5I	GGATG	1 cut(s)	690
BstKTI	GATC	3 cut(s)	106, 283, 295
BstMAI	GTCTC	2 cut(s)	96, 808
BstMBI	GATC	3 cut(s)	103, 280, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 518, 645
BstSFI	CTRYAG	1 cut(s)	760
BstV1I	GCAGC	7 cut(s)	200, 469, 499, 502, 505, 714, 717
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	690
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	3 cut(s)	341, 460, 639
CaiI	CAGNNNCTG	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	578
CseI	GACGC	2 cut(s)	654, 678
Csp6I	GTAC	2 cut(s)	161, 286
CviAII	CATG	2 cut(s)	192, 599
CviJI	RGCY	2 cut(s)	155, 835
CviKI_1	RGCY	2 cut(s)	155, 835
CviQI	GTAC	2 cut(s)	161, 286
DdeI	CTNAG	4 cut(s)	87, 436, 632, 840
DpnI	GATC	3 cut(s)	105, 282, 294
DpnII	GATC	3 cut(s)	103, 280, 292
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	3 cut(s)	42, 347, 674
EarI	CTCTTC	3 cut(s)	42, 347, 674
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRI	GAATTC	1 cut(s)	602
FaeI	CATG	2 cut(s)	195, 602
FatI	CATG	2 cut(s)	191, 598
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	7 cut(s)	189, 483, 513, 516, 519, 728, 731
FokI	GGATG	1 cut(s)	697
Fsp4HI	GCNGC	7 cut(s)	189, 483, 513, 516, 519, 728, 731
FspBI	CTAG	1 cut(s)	548
GluI	GCNGC	7 cut(s)	189, 483, 513, 516, 519, 728, 731
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	2 cut(s)	654, 678
Hin1I	GRCGYC	1 cut(s)	646
Hin1II	CATG	2 cut(s)	195, 602
HinfI	GANTC	3 cut(s)	247, 421, 801
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	20, 596
Hpy188I	TCNGA	4 cut(s)	108, 246, 252, 717
Hpy188III	TCNNGA	4 cut(s)	171, 296, 377, 788
Hpy8I	GTNNAC	2 cut(s)	20, 596
HpyAV	CCTTC	3 cut(s)	226, 591, 816
HpyCH4III	ACNGT	4 cut(s)	79, 347, 464, 593
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	9 cut(s)	67, 125, 268, 460, 473, 504, 521, 639, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 518, 645
HpyF3I	CTNAG	4 cut(s)	87, 436, 632, 840
HpySE526I	ACGT	1 cut(s)	257
Hsp92I	GRCGYC	1 cut(s)	646
Hsp92II	CATG	2 cut(s)	195, 602
Kzo9I	GATC	3 cut(s)	103, 280, 292
LmnI	GCTCC	3 cut(s)	235, 490, 738
LpnPI	CCDG	9 cut(s)	159, 281, 285, 382, 522, 560, 579, 627, 662
Lsp1109I	GCAGC	7 cut(s)	200, 469, 499, 502, 505, 714, 717
LweI	GCATC	3 cut(s)	409, 616, 714
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	1 cut(s)	257
MalI	GATC	3 cut(s)	105, 282, 294
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	3 cut(s)	103, 280, 292
MboII	GAAGA	7 cut(s)	16, 29, 364, 598, 688, 691, 838
MluCI	AATT	8 cut(s)	68, 119, 201, 406, 415, 602, 617, 771
MlyI	GAGTC	2 cut(s)	430, 810
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	2 cut(s)	215, 774
MslI	CAYNNNNRTG	2 cut(s)	465, 537
MspI	CCGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	479, 518, 645
NdeII	GATC	3 cut(s)	103, 280, 292
NlaIII	CATG	2 cut(s)	195, 602
NlaIV	GGNNCC	2 cut(s)	144, 579
NmeAIII	GCCGAG	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	7 cut(s)	190, 484, 514, 517, 520, 729, 732
PleI	GAGTC	2 cut(s)	429, 809
PpsI	GAGTC	2 cut(s)	429, 809
PpuMI	RGGWCCY	1 cut(s)	578
Psp5II	RGGWCCY	1 cut(s)	578
PspN4I	GGNNCC	2 cut(s)	144, 579
PspPI	GGNCC	1 cut(s)	578
PspPPI	RGGWCCY	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	94
RsaI	GTAC	2 cut(s)	162, 287
RsaNI	GTAC	2 cut(s)	161, 286
RseI	CAYNNNNRTG	2 cut(s)	465, 537
SaqAI	TTAA	2 cut(s)	215, 774
SatI	GCNGC	7 cut(s)	189, 483, 513, 516, 519, 728, 731
Sau3AI	GATC	3 cut(s)	103, 280, 292
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	2 cut(s)	430, 810
SetI	ASST	4 cut(s)	162, 260, 266, 434
SfaNI	GCATC	3 cut(s)	409, 616, 714
SfcI	CTRYAG	1 cut(s)	760
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	2 cut(s)	465, 537
SmlI	CTYRAG	2 cut(s)	663, 786
SmoI	CTYRAG	2 cut(s)	663, 786
Sse9I	AATT	8 cut(s)	68, 119, 201, 406, 415, 602, 617, 771
SsiI	CCGC	3 cut(s)	238, 551, 768
SspMI	CTAG	1 cut(s)	548
TaaI	ACNGT	4 cut(s)	79, 347, 464, 593
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	170
TasI	AATT	8 cut(s)	68, 119, 201, 406, 415, 602, 617, 771
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	215, 774
Tru9I	TTAA	2 cut(s)	215, 774
TscAI	CASTG	3 cut(s)	341, 467, 646
TseI	GCWGC	7 cut(s)	188, 482, 512, 515, 518, 727, 730
TspDTI	ATGAA	3 cut(s)	17, 342, 615
TspGWI	ACGGA	2 cut(s)	538, 700
TspRI	CASTG	3 cut(s)	341, 467, 646
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	3 cut(s)	119, 415, 602
XmiI	GTMKAC	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.