Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041487.1

Orthogroup ID

OG0006519

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1727

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 628 bp

gcaatttactactgtttctcctctgtctctgccaacagatcagaactatgaggaatttgcaaccacaaggacttttaggggggaggcatcggatatgcccgaggtacattgttcgagagaaaggagtaaggcagcatggaaagtaattgaggagtatttaatgccctatgtagagaaagagcggtatcagattccgagaacgtgtaggctgcaccctgataatgatctgtacagagatcaggaacagcacaaaatccgaatagatatatatgaatggcagtgtggatactgtaagaagagattttacgaggagaagtttcttgacaagcattttgacaacaggcatcacaatttgctgaatgtgagtcatagtaggtgcttagcagatgtctgtggtgcgttgcactgtgatgttgcaatgggtgctgccccacacaagaccaagtgcaatcctgctgctgctgcacggaataaacatctgtgtgagggtctagcggatagttgttttccagtcaatcagggtccttcagcaaaccgtttacatgaattctttttacgccaattctgtgatgccctcacttgcactggacgccagaaaccattctctcaaggacgcaagaaggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

24.23

Weight (kDa)

8.43

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006519)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40710 AT5G40710
fragaria_vesca	FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420 FvH4_6g52420
malus_domestica	MD09G1018200.v1.1
prunus_persica	Prupe.3G298900_v2.0.a1 Prupe.3G298900_v2.0.a1
pyrus_communis	pycom111g01520
rosa_chinensis	RchiOBHm_Chr2g0174061
rosa_laevigata	RLG00000022241
rosa_multiflora	Rmu_sc0003188.1_g000033 Rmu_sc0041487.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078490
rosa_rugosa	Rorug02G0574300 Rorug02G0574400 Rorug02G0574500
rosa_samantha	Rh2AG653700 Rh2BG665000 Rh2CG629300 Rh2DG679700
rosa_wichuraiana	Rw2G053680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	182
AciI	CCGC	2 cut(s)	182, 495
AcsI	RAATTY	2 cut(s)	54, 546
AcuI	CTGAAG	1 cut(s)	511
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	2 cut(s)	106, 231
AflIII	ACRYGT	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	99
ApeKI	GCWGC	6 cut(s)	132, 209, 426, 456, 459, 462
ApoI	RAATTY	2 cut(s)	54, 546
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
Asp700I	GAANNNNTTC	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	522
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	522
BarI	GAAGNNNNNNTAC	2 cut(s)	288, 320
BbvI	GCAGC	6 cut(s)	144, 196, 413, 443, 446, 449
BciVI	GTATCC	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	6 cut(s)	133, 210, 427, 457, 460, 463
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	6 cut(s)	134, 211, 428, 458, 461, 464
Bme18I	GGWCC	1 cut(s)	522
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	1 cut(s)	523
BmsI	GCATC	3 cut(s)	96, 353, 560
Bpu1102I	GCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	100
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	510, 590
Bse3DI	GCAATG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	424
BseNI	ACTGG	2 cut(s)	510, 590
BseRI	GAGGAG	3 cut(s)	10, 165, 324
BseXI	GCAGC	6 cut(s)	144, 196, 413, 443, 446, 449
BsgI	GTGCAG	2 cut(s)	195, 448
BsiHKCI	CYCGRG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	99
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	38, 224, 236
Bsp1720I	GCTNAGC	1 cut(s)	380
BspACI	CCGC	2 cut(s)	182, 495
BspLI	GGNNCC	1 cut(s)	523
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	510, 590
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	38, 224, 236
BssNI	GRCGYC	1 cut(s)	590
Bst4CI	ACNGT	4 cut(s)	14, 291, 408, 537
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	590
BstAPI	GCANNNNNTGC	1 cut(s)	423
BstAUI	TGTACA	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	380
BstKTI	GATC	3 cut(s)	41, 227, 239
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	38, 224, 236
BstMWI	GCNNNNNNNGC	3 cut(s)	423, 462, 589
BstV1I	GCAGC	6 cut(s)	144, 196, 413, 443, 446, 449
BsuI	GTATCC	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	285, 404, 583
Cfr13I	GGNCC	1 cut(s)	522
CseI	GACGC	2 cut(s)	598, 622
Csp6I	GTAC	2 cut(s)	105, 230
CviAII	CATG	2 cut(s)	136, 543
CviJI	RGCY	1 cut(s)	209
CviKI_1	RGCY	1 cut(s)	209
CviQI	GTAC	2 cut(s)	105, 230
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	3 cut(s)	40, 226, 238
DpnII	GATC	3 cut(s)	38, 224, 236
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	546
FaeI	CATG	2 cut(s)	139, 546
FaiI	YATR	9 cut(s)	49, 96, 137, 169, 267, 269, 271, 370, 544
FatI	CATG	2 cut(s)	135, 542
Fnu4HI	GCNGC	6 cut(s)	133, 210, 427, 457, 460, 463
Fsp4HI	GCNGC	6 cut(s)	133, 210, 427, 457, 460, 463
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	6 cut(s)	133, 210, 427, 457, 460, 463
HgaI	GACGC	2 cut(s)	598, 622
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	2 cut(s)	139, 546
HinfI	GANTC	2 cut(s)	191, 365
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	5 cut(s)	43, 92, 190, 196, 258
Hpy188III	TCNNGA	3 cut(s)	115, 240, 321
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	2 cut(s)	535, 614
HpyCH4III	ACNGT	4 cut(s)	14, 291, 408, 537
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	7 cut(s)	60, 212, 404, 417, 448, 465, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	423, 462, 589
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	2 cut(s)	139, 546
Kzo9I	GATC	3 cut(s)	38, 224, 236
LpnPI	CCDG	8 cut(s)	225, 229, 326, 466, 504, 523, 571, 606
Lsp1109I	GCAGC	6 cut(s)	144, 196, 413, 443, 446, 449
LweI	GCATC	3 cut(s)	96, 353, 560
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	201
MalI	GATC	3 cut(s)	40, 226, 238
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	3 cut(s)	38, 224, 236
MboII	GAAGA	1 cut(s)	308
MluCI	AATT	6 cut(s)	3, 54, 145, 350, 546, 561
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	8 cut(s)	31, 44, 77, 95, 143, 302, 479, 585
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	2 cut(s)	409, 481
MwoI	GCNNNNNNNGC	3 cut(s)	423, 462, 589
NdeII	GATC	3 cut(s)	38, 224, 236
NlaIII	CATG	2 cut(s)	139, 546
NlaIV	GGNNCC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	6 cut(s)	134, 211, 428, 458, 461, 464
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	522
PspPPI	RGGWCCY	1 cut(s)	522
RsaI	GTAC	2 cut(s)	106, 231
RsaNI	GTAC	2 cut(s)	105, 230
RseI	CAYNNNNRTG	2 cut(s)	409, 481
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	6 cut(s)	133, 210, 427, 457, 460, 463
Sau3AI	GATC	3 cut(s)	38, 224, 236
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	1 cut(s)	374
SetI	ASST	4 cut(s)	106, 204, 378, 625
SfaNI	GCATC	3 cut(s)	96, 353, 560
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	2 cut(s)	409, 481
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
Sse9I	AATT	6 cut(s)	3, 54, 145, 350, 546, 561
SsiI	CCGC	2 cut(s)	182, 495
SspMI	CTAG	1 cut(s)	492
TaaI	ACNGT	4 cut(s)	14, 291, 408, 537
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	114
TasI	AATT	6 cut(s)	3, 54, 145, 350, 546, 561
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	3 cut(s)	285, 411, 590
TseI	GCWGC	6 cut(s)	132, 209, 426, 456, 459, 462
TspDTI	ATGAA	2 cut(s)	286, 559
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	3 cut(s)	285, 411, 590
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	2 cut(s)	54, 546
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.