AT5G41810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012437
Physical Location & Seq
Forward (+)
16738062 .. 16739790
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41810.1

Sequence Viewer

Length: 867 bp
ATGGAGATCAAAGTCAAAGCAAAAGATGTAGAGTCGACAATGATGTCAACTAAAGAGGAGGATGAGATCAAGAAGATGAAAGAGTGTGTGGTGATTCAGAAGGCAGATGAGGAGGTTACTAAAGGACAAGAAACTATGAAGATTTTGGATGGTTCAAGACAAAACCAAGATGAAACAAGACAAGCTGATTCTAAGAATATTGACTCACCATCATCATCATCACTTGAGATGAAGAAGAAGTTGGAAATTGACCAAAAATTTACGAGTCAAAACGAAGAAAACACCAAAAAGGAAGAGGAGAAGAAGAAAGAGACCAACAATAACAATCTTTCTAACATGAAGCATAAGAAGACGAGTTCACACGTATGGGACTGTGGGAGCACTCTCTACGACTCGTTCGAGCTCAACTCGTTCAAACGTCAACTCGACTCAGCCATCTCTGCTTCCTCCGCCAGAACTATGTCCATGTCTCACCTCCCTGACCGCCGTATCCCTTCTCTCAGCTCACTTTCGCCGGAGTACTCTCCTCCTCTTCCTCCTCCACCGACAACTTCTTCTTCCTCCTCCTCCGGTGGAAAGAAACACTCGAACAAGATCTCTCGTTCTCTACAGAGATTCTTGAAGTCAATGTTCAAACCTAAACAGCACCAAAGCTTAACCACTCCTTCTTCGCCGGTCTACAAGGCGGTGGGTCACGGCGGTGGCGATAAAGATCGATACTACGTCGTTTACGACAAATCGGGTTCGTTGACAACTATTCCAGAGTCAACGGAGAAAGAAGTGAGCCCCGAGATCAACTCTCTTGTTAGGAAGACCGTGTCCGAGAGATTCCCGGCGAGTAGAGTCGTTGGTATTTCATGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.18

Weight (kDa)

9.08

Isoelectric Point (pI)

69.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41810 AT5G41810
fragaria_vesca FvH4_5g04150
malus_domestica MD06G1103200.v1.1 MD14G1122100.v1.1
prunus_persica Prupe.5G116000_v2.0.a1
pyrus_communis pycom06g09780
rosa_chinensis RchiOBHm_Chr7g0195351
rosa_laevigata RLG00000004128
rosa_multiflora Rmu_co8178312.1_g000001 Rmu_sc0005377.1_g000004 Rmu_sc0007366.1_g000003
rosa_roxburghii Rroxscaffold_3G00260560
rosa_rugosa Rorug07G0022700
rosa_samantha Rh7AG149900 Rh7BG151300 Rh7CG155100 Rh7DG151000
rosa_wichuraiana Rw7G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 43
AccI GTMKAC 2 cut(s) 35, 678
AciI CCGC 4 cut(s) 450, 484, 686, 699
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 4 cut(s) 156, 415, 622, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AleI CACNNNNGTG 1 cut(s) 699
AluBI AGCT 4 cut(s) 185, 403, 504, 654
AluI AGCT 4 cut(s) 185, 403, 504, 654
Alw21I GWGCWC 2 cut(s) 383, 405
Alw26I GTCTC 2 cut(s) 305, 474
Ama87I CYCGRG 1 cut(s) 788
ApoI RAATTY 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 833
AsuHPI GGTGA 3 cut(s) 103, 198, 464
AvaI CYCGRG 1 cut(s) 788
BaeI ACNNNNGTAYC 2 cut(s) 472, 505
BanII GRGCYC 2 cut(s) 405, 788
BbsI GAAGAC 2 cut(s) 356, 818
Bbv12I GWGCWC 2 cut(s) 383, 405
BccI CCATC 3 cut(s) 143, 217, 443
BceAI ACGGC 2 cut(s) 471, 712
BciVI GTATCC 1 cut(s) 500
BcnI CCSGG 1 cut(s) 833
BcoDI GTCTC 2 cut(s) 305, 474
BfmI CTRYAG 1 cut(s) 608
BfuI GTATCC 1 cut(s) 500
BglII AGATCT 1 cut(s) 594
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 833
BmeT110I CYCGRG 1 cut(s) 788
BmrFI CCNGG 1 cut(s) 833
BpiI GAAGAC 2 cut(s) 356, 818
BplI GAGNNNNNCTC 4 cut(s) 392, 424, 782, 814
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 833
Bsa29I ATCGAT 1 cut(s) 715
BsaAI YACGTR 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 569
Bse118I RCCGGY 1 cut(s) 673
Bse8I GATNNNNATC 1 cut(s) 711
BseCI ATCGAT 1 cut(s) 715
BseGI GGATG 2 cut(s) 67, 154
BseJI GATNNNNATC 1 cut(s) 711
BseMII CTCAG 2 cut(s) 444, 514
BseRI GAGGAG 8 cut(s) 71, 125, 311, 516, 519, 528, 553, 556
BshVI ATCGAT 1 cut(s) 715
BsiHKAI GWGCWC 2 cut(s) 383, 405
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 4 cut(s) 515, 570, 674, 833
BslFI GGGAC 1 cut(s) 383
BsmAI GTCTC 2 cut(s) 305, 474
BsmFI GGGAC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 3 cut(s) 383, 405, 788
Bsp143I GATC 5 cut(s) 6, 66, 594, 712, 792
BspACI CCGC 4 cut(s) 450, 484, 686, 699
BspCNI CTCAG 2 cut(s) 443, 513
BspDI ATCGAT 1 cut(s) 715
BspTNI GGTCTC 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 673
BssAI RCCGGY 1 cut(s) 673
BssMI GATC 5 cut(s) 6, 66, 594, 712, 792
Bst4CI ACNGT 2 cut(s) 374, 817
Bst6I CTCTTC 2 cut(s) 288, 537
BstBAI YACGTR 1 cut(s) 364
BstDEI CTNAG 3 cut(s) 192, 430, 500
BstF5I GGATG 2 cut(s) 67, 154
BstKTI GATC 5 cut(s) 9, 69, 597, 715, 795
BstMAI GTCTC 2 cut(s) 305, 474
BstMBI GATC 5 cut(s) 6, 66, 594, 712, 792
BstMWI GCNNNNNNNGC 2 cut(s) 440, 449
BstSCI CCNGG 1 cut(s) 831
BstSFI CTRYAG 1 cut(s) 608
BstV2I GAAGAC 2 cut(s) 356, 818
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
Bsu15I ATCGAT 1 cut(s) 715
BsuI GTATCC 1 cut(s) 500
BsuTUI ATCGAT 1 cut(s) 715
BtsCI GGATG 2 cut(s) 67, 154
Cfr10I RCCGGY 1 cut(s) 673
ClaI ATCGAT 1 cut(s) 715
Csp6I GTAC 1 cut(s) 520
CviAII CATG 4 cut(s) 337, 466, 858, 864
CviJI RGCY 6 cut(s) 185, 403, 434, 504, 654, 786
CviKI_1 RGCY 6 cut(s) 185, 403, 434, 504, 654, 786
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 3 cut(s) 192, 430, 500
DpnI GATC 5 cut(s) 8, 68, 596, 714, 794
DpnII GATC 5 cut(s) 6, 66, 594, 712, 792
DrdI GACNNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 288, 537
EarI CTCTTC 2 cut(s) 288, 537
EciI GGCGGA 1 cut(s) 439
Ecl136II GAGCTC 1 cut(s) 403
Eco24I GRGCYC 2 cut(s) 405, 788
Eco31I GGTCTC 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 403
Eco88I CYCGRG 1 cut(s) 788
EcoICRI GAGCTC 1 cut(s) 403
EcoT38I GRGCYC 2 cut(s) 405, 788
FaeI CATG 4 cut(s) 340, 469, 861, 867
FaiI YATR 8 cut(s) 137, 338, 345, 367, 461, 467, 859, 865
FaqI GGGAC 1 cut(s) 383
FatI CATG 4 cut(s) 336, 465, 857, 863
FblI GTMKAC 2 cut(s) 35, 678
FokI GGATG 2 cut(s) 74, 161
FriOI GRGCYC 2 cut(s) 405, 788
HapII CCGG 4 cut(s) 515, 570, 674, 833
Hin1II CATG 4 cut(s) 340, 469, 861, 867
HincII GTYRAC 5 cut(s) 36, 48, 422, 750, 768
HindII GTYRAC 5 cut(s) 36, 48, 422, 750, 768
HindIII AAGCTT 1 cut(s) 652
HpaII CCGG 4 cut(s) 515, 570, 674, 833
HphI GGTGA 3 cut(s) 103, 198, 464
Hpy166II GTNNAC 8 cut(s) 36, 48, 359, 422, 679, 730, 750, 768
Hpy188I TCNGA 2 cut(s) 99, 823
Hpy188III TCNNGA 4 cut(s) 70, 156, 619, 761
Hpy8I GTNNAC 8 cut(s) 36, 48, 359, 422, 679, 730, 750, 768
Hpy99I CGWCG 1 cut(s) 728
HpyAV CCTTC 3 cut(s) 94, 504, 675
HpyCH4III ACNGT 2 cut(s) 374, 817
HpyCH4IV ACGT 3 cut(s) 363, 418, 723
HpyCH4V TGCA 1 cut(s) 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 449
HpyF3I CTNAG 3 cut(s) 192, 430, 500
HpySE526I ACGT 3 cut(s) 363, 418, 723
Hsp92II CATG 4 cut(s) 340, 469, 861, 867
Kzo9I GATC 5 cut(s) 6, 66, 594, 712, 792
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 7 cut(s) 466, 492, 528, 583, 687, 774, 846
MaeII ACGT 3 cut(s) 363, 418, 723
MaeIII GTNAC 2 cut(s) 115, 692
MalI GATC 5 cut(s) 8, 68, 596, 714, 794
MboI GATC 5 cut(s) 6, 66, 594, 712, 792
MflI RGATCY 1 cut(s) 594
MhlI GDGCHC 3 cut(s) 383, 405, 788
MluCI AATT 2 cut(s) 246, 257
MlyI GAGTC 7 cut(s) 41, 197, 274, 386, 422, 773, 852
MmeI TCCRAC 1 cut(s) 222
MseI TTAA 1 cut(s) 656
MslI CAYNNNNRTG 3 cut(s) 364, 699, 862
MspI CCGG 4 cut(s) 515, 570, 674, 833
MspR9I CCNGG 1 cut(s) 833
MwoI GCNNNNNNNGC 2 cut(s) 440, 449
NciI CCSGG 1 cut(s) 833
NdeII GATC 5 cut(s) 6, 66, 594, 712, 792
NlaIII CATG 4 cut(s) 340, 469, 861, 867
NmuCI GTSAC 1 cut(s) 692
OliI CACNNNNGTG 1 cut(s) 699
PcsI WCGNNNNNNNCGW 3 cut(s) 396, 702, 729
PfeI GAWTC 4 cut(s) 94, 188, 615, 828
PflFI GACNNNGTC 1 cut(s) 817
PleI GAGTC 7 cut(s) 40, 197, 273, 386, 422, 772, 851
PpsI GAGTC 7 cut(s) 40, 197, 273, 386, 422, 772, 851
Ppu21I YACGTR 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 405
PsuI RGATCY 1 cut(s) 594
PsyI GACNNNGTC 1 cut(s) 817
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 3 cut(s) 364, 699, 862
SacI GAGCTC 1 cut(s) 405
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 656
Sau3AI GATC 5 cut(s) 6, 66, 594, 712, 792
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 7 cut(s) 41, 197, 274, 386, 422, 773, 852
ScrFI CCNGG 1 cut(s) 833
SduI GDGCHC 3 cut(s) 383, 405, 788
SfcI CTRYAG 1 cut(s) 608
SmiMI CAYNNNNRTG 3 cut(s) 364, 699, 862
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 2 cut(s) 246, 257
SsiI CCGC 4 cut(s) 450, 484, 686, 699
SspI AATATT 1 cut(s) 199
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 831
TaaI ACNGT 2 cut(s) 374, 817
TaiI ACGT 3 cut(s) 366, 421, 726
TaqI TCGA 5 cut(s) 35, 399, 426, 587, 715
TasI AATT 2 cut(s) 246, 257
TatI WGTACW 1 cut(s) 519
TfiI GAWTC 4 cut(s) 94, 188, 615, 828
Tru1I TTAA 1 cut(s) 656
Tru9I TTAA 1 cut(s) 656
TseFI GTSAC 1 cut(s) 692
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 6 cut(s) 92, 152, 186, 245, 353, 846
TspGWI ACGGA 1 cut(s) 785
Tth111I GACNNNGTC 1 cut(s) 817
XapI RAATTY 1 cut(s) 257
XmiI GTMKAC 2 cut(s) 35, 678
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.