Rmu_co8178312.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8178312.1
OG0012437
Physical Location & Seq
Forward (+)
264 .. 682
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8178312.1_g000001.1.cds

Sequence Viewer

Length: 419 bp
atggaggtagcagcagcggtttctggcgataaaaagcacttatcctcgcactcacgacaagagtttgattctcgtcctccccgtcctctcttgaatcaaaggaaatcgatggagttaggagtttccaggggtaaagagcccctaccctcgcgttcacgacaagagtttgactctcgctcacctcgcgctctcatggatcaaaagaaagctgtagaggtaagagcctccggtggtggtaaacagaatttaccctcacacccgcgacaagagttcgattctcgtcttcgcccaaaatcaatggagttaagatcttcggaccgtaaagagcatttgcctgcacaaccacagagagagctcgaatctagtgaggccaagtcgtcgaggcgtgtatgggattgtggcagctcgctgtacgactc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.88

Weight (kDa)

10.06

Isoelectric Point (pI)

83.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41810 AT5G41810
fragaria_vesca FvH4_5g04150
malus_domestica MD06G1103200.v1.1 MD14G1122100.v1.1
prunus_persica Prupe.5G116000_v2.0.a1
pyrus_communis pycom06g09780
rosa_chinensis RchiOBHm_Chr7g0195351
rosa_laevigata RLG00000004128
rosa_multiflora Rmu_co8178312.1_g000001 Rmu_sc0005377.1_g000004 Rmu_sc0007366.1_g000003
rosa_roxburghii Rroxscaffold_3G00260560
rosa_rugosa Rorug07G0022700
rosa_samantha Rh7AG149900 Rh7BG151300 Rh7CG155100 Rh7DG151000
rosa_wichuraiana Rw7G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 151, 186, 262
AciI CCGC 2 cut(s) 17, 260
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 1 cut(s) 413
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 3 cut(s) 209, 355, 405
AluI AGCT 3 cut(s) 209, 355, 405
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 3 cut(s) 11, 14, 402
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 171
AvaII GGWCC 1 cut(s) 316
BanII GRGCYC 2 cut(s) 141, 357
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 23, 26, 414
BccI CCATC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 210
BglII AGATCT 1 cut(s) 308
BisI GCNGC 3 cut(s) 12, 15, 403
BlsI GCNGC 3 cut(s) 13, 16, 404
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 155, 187
Bsa29I ATCGAT 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 227
BseBI CCWGG 1 cut(s) 127
BseCI ATCGAT 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 126
BseXI GCAGC 3 cut(s) 23, 26, 414
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 3 cut(s) 151, 186, 262
BshFI GGCC 1 cut(s) 371
BshVI ATCGAT 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 1 cut(s) 228
BsnI GGCC 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 141, 357
Bsp143I GATC 2 cut(s) 196, 308
BspACI CCGC 2 cut(s) 17, 260
BspANI GGCC 1 cut(s) 371
BspDI ATCGAT 1 cut(s) 107
BspFNI CGCG 3 cut(s) 151, 186, 262
BspPI GGATC 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 196, 308
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 336, 407
BstFNI CGCG 3 cut(s) 151, 186, 262
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 2 cut(s) 199, 311
BstMBI GATC 2 cut(s) 196, 308
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 3 cut(s) 151, 186, 262
BstV1I GCAGC 3 cut(s) 23, 26, 414
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 107
BsuRI GGCC 1 cut(s) 371
BsuTUI ATCGAT 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 336, 407
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 316
ClaI ATCGAT 1 cut(s) 107
CpoI CGGWCCG 1 cut(s) 316
Csp6I GTAC 1 cut(s) 412
CspI CGGWCCG 1 cut(s) 316
CviAII CATG 1 cut(s) 193
CviJI RGCY 6 cut(s) 139, 209, 224, 355, 371, 405
CviKI_1 RGCY 6 cut(s) 139, 209, 224, 355, 371, 405
CviQI GTAC 1 cut(s) 412
DpnI GATC 2 cut(s) 198, 310
DpnII GATC 2 cut(s) 196, 308
Ecl136II GAGCTC 1 cut(s) 355
Eco24I GRGCYC 2 cut(s) 141, 357
Eco47I GGWCC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 125
EcoT38I GRGCYC 2 cut(s) 141, 357
FaeI CATG 1 cut(s) 196
FaiI YATR 2 cut(s) 194, 391
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 12, 15, 403
FriOI GRGCYC 2 cut(s) 141, 357
Fsp4HI GCNGC 3 cut(s) 12, 15, 403
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 187
GluI GCNGC 3 cut(s) 12, 15, 403
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 6 cut(s) 68, 94, 170, 275, 359, 416
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 171
Hpy166II GTNNAC 2 cut(s) 155, 239
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 3 cut(s) 54, 91, 156
Hpy8I GTNNAC 2 cut(s) 155, 239
Hpy99I CGWCG 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 196, 308
LpnPI CCDG 5 cut(s) 9, 112, 139, 241, 348
Lsp1109I GCAGC 3 cut(s) 23, 26, 414
MaeI CTAG 1 cut(s) 363
MalI GATC 2 cut(s) 198, 310
MboI GATC 2 cut(s) 196, 308
MboII GAAGA 2 cut(s) 275, 303
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 2 cut(s) 141, 357
MluCI AATT 1 cut(s) 244
MlyI GAGTC 2 cut(s) 164, 410
MseI TTAA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 3 cut(s) 151, 186, 262
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 2 cut(s) 196, 308
NlaIII CATG 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PfeI GAWTC 4 cut(s) 68, 94, 275, 359
PkrI GCNGC 3 cut(s) 13, 16, 404
PleI GAGTC 2 cut(s) 164, 410
PpsI GAGTC 2 cut(s) 164, 410
Psp124BI GAGCTC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspPI GGNCC 1 cut(s) 316
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
Rsr2I CGGWCCG 1 cut(s) 316
RsrII CGGWCCG 1 cut(s) 316
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 3 cut(s) 12, 15, 403
Sau3AI GATC 2 cut(s) 196, 308
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 2 cut(s) 164, 410
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 2 cut(s) 141, 357
SetI ASST 6 cut(s) 9, 184, 211, 219, 357, 407
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 316
Sse9I AATT 1 cut(s) 244
SsiI CCGC 2 cut(s) 17, 260
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 4 cut(s) 107, 273, 357, 380
TasI AATT 1 cut(s) 244
TfiI GAWTC 4 cut(s) 68, 94, 275, 359
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TseI GCWGC 3 cut(s) 11, 14, 402
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.