FvH4_5g04150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012437
Physical Location & Seq
Forward (+)
2471397 .. 2472995
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04150.t1

Sequence Viewer

Length: 783 bp
ATGGAGGTAGCGGCGGTTTCTGGCGATAAAAAGCATTCAACCTCGCACTCACGGCAAGAGTTTGATTCTCGTCCTCCCCGTCCTCTCTTGAATCGAAGGAAATCGATGGAGTTAGTAGTTTCCGGTGGTAAAGAGCTCCCGTTAACGTCACGGCAAGAGGTTGACTCTCGTTCTCTTATGGATCACAAGAAGGTGATAGAGGTAAGAGCCTCCTCCGGTGGTGGTAAACAAGAGTTTGATTCTCGTCTTCGCCCAAAATCAATGGATTTAAGTTCTTTGGATCACCGTAAAGAGAATTTACTCTCACAACCGTCGCGAGGGCTCGAATCAAGTGAGGCTAAGTCATCGAGGCGTGTATGGGATTGTGGCAGCTCACTGTACGACTCATTCGAGCTCAACTCGTTCAAACGTGAACTCGACTCAGCTATATCATGCAGAACCATGTCAATGCCTCACCTCTCTGATCGCCGAGCTCCGCTGCCGCAGCAACCCACCACAGTCGCCAAGAAACCTTCAAAACTCTCTAGATCACTTAACAAGTTCCTCCGCTCCGTTTTCAAGCCAAAGACGGGTTCAGGTCCCGTTTTTAGAGTGCAAGAGAAGTCCAACAAAACTAAGGACGGGTTTTACGTGGTTTACGACAAGTCCGGTGCACTCACGACCATTCCTGAAGTAGTTCCTCATGAATTTAGTGGTTTCTCGCCGGAGATTGGGTCCTTAGTGAGGAGGACGGGGTCGGAAAGGTTCACAAGTACTGCTTCTATTGGTATTTCATGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.91

Weight (kDa)

9.94

Isoelectric Point (pI)

71.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41810 AT5G41810
fragaria_vesca FvH4_5g04150
malus_domestica MD06G1103200.v1.1 MD14G1122100.v1.1
prunus_persica Prupe.5G116000_v2.0.a1
pyrus_communis pycom06g09780
rosa_chinensis RchiOBHm_Chr7g0195351
rosa_laevigata RLG00000004128
rosa_multiflora Rmu_co8178312.1_g000001 Rmu_sc0005377.1_g000004 Rmu_sc0007366.1_g000003
rosa_roxburghii Rroxscaffold_3G00260560
rosa_rugosa Rorug07G0022700
rosa_samantha Rh7AG149900 Rh7BG151300 Rh7CG155100 Rh7DG151000
rosa_wichuraiana Rw7G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 549
AccII CGCG 1 cut(s) 316
AciI CCGC 5 cut(s) 11, 14, 476, 482, 547
AclWI GGATC 2 cut(s) 189, 288
AcsI RAATTY 2 cut(s) 295, 686
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 2 cut(s) 380, 754
AfiI CCNNNNNNNGG 4 cut(s) 317, 569, 710, 723
AgsI TTSAA 5 cut(s) 39, 91, 406, 516, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 556, 588
AluBI AGCT 5 cut(s) 136, 372, 394, 425, 473
AluI AGCT 5 cut(s) 136, 372, 394, 425, 473
Alw21I GWGCWC 4 cut(s) 138, 396, 475, 655
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 2 cut(s) 189, 288
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 3 cut(s) 369, 478, 484
ApoI RAATTY 2 cut(s) 295, 686
Asp700I GAANNNNTTC 1 cut(s) 675
AspS9I GGNCC 2 cut(s) 578, 714
AsuHPI GGTGA 3 cut(s) 205, 275, 446
AvaII GGWCC 2 cut(s) 578, 714
BaeGI GKGCMC 1 cut(s) 655
BanII GRGCYC 4 cut(s) 138, 324, 396, 475
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 4 cut(s) 138, 396, 475, 655
BbvI GCAGC 3 cut(s) 381, 465, 496
BccI CCATC 1 cut(s) 100
BceAI ACGGC 2 cut(s) 68, 167
BfaI CTAG 1 cut(s) 525
BisI GCNGC 5 cut(s) 12, 370, 479, 482, 485
BlsI GCNGC 5 cut(s) 13, 371, 480, 483, 486
BmcAI AGTACT 1 cut(s) 754
Bme18I GGWCC 2 cut(s) 578, 714
BmgT120I GGNCC 2 cut(s) 578, 714
BmiI GGNNCC 2 cut(s) 580, 715
BpiI GAAGAC 1 cut(s) 239
BplI GAGNNNNNCTC 4 cut(s) 149, 181, 383, 415
Bsa29I ATCGAT 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 631
BsaWI WCCGGW 3 cut(s) 122, 215, 647
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 569, 710, 723
BseCI ATCGAT 1 cut(s) 104
BseLI CCNNNNNNNGG 4 cut(s) 317, 569, 710, 723
BseMII CTCAG 1 cut(s) 435
BseRI GAGGAG 2 cut(s) 202, 739
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 3 cut(s) 381, 465, 496
Bsh1236I CGCG 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 104
BsiHKAI GWGCWC 4 cut(s) 138, 396, 475, 655
BsiSI CCGG 4 cut(s) 123, 216, 648, 704
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 4 cut(s) 317, 569, 710, 723
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 34
Bsp1286I GDGCHC 5 cut(s) 138, 324, 396, 475, 655
Bsp143I GATC 4 cut(s) 181, 280, 463, 527
Bsp68I TCGCGA 1 cut(s) 316
BspACI CCGC 5 cut(s) 11, 14, 476, 482, 547
BspCNI CTCAG 1 cut(s) 434
BspDI ATCGAT 1 cut(s) 104
BspFNI CGCG 1 cut(s) 316
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 580, 715
BspPI GGATC 2 cut(s) 189, 288
BsrBI CCGCTC 1 cut(s) 549
BssMI GATC 4 cut(s) 181, 280, 463, 527
Bst4CI ACNGT 4 cut(s) 287, 312, 378, 499
BstBAI YACGTR 1 cut(s) 631
BstDEI CTNAG 4 cut(s) 339, 421, 615, 718
BstENI CCTNNNNNAGG 1 cut(s) 721
BstFNI CGCG 1 cut(s) 316
BstKTI GATC 4 cut(s) 184, 283, 466, 530
BstMBI GATC 4 cut(s) 181, 280, 463, 527
BstMWI GCNNNNNNNGC 2 cut(s) 52, 484
BstSLI GKGCMC 1 cut(s) 655
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 381, 465, 496
BstV2I GAAGAC 1 cut(s) 239
Bsu15I ATCGAT 1 cut(s) 104
BsuTUI ATCGAT 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 374
BtuMI TCGCGA 1 cut(s) 316
CciI TCATGA 1 cut(s) 682
Cfr13I GGNCC 2 cut(s) 578, 714
ClaI ATCGAT 1 cut(s) 104
Csp6I GTAC 2 cut(s) 379, 753
CviAII CATG 4 cut(s) 432, 442, 683, 774
CviJI RGCY 9 cut(s) 136, 209, 322, 338, 372, 394, 425, 473, 562
CviKI_1 RGCY 9 cut(s) 136, 209, 322, 338, 372, 394, 425, 473, 562
CviQI GTAC 2 cut(s) 379, 753
DdeI CTNAG 4 cut(s) 339, 421, 615, 718
DpnI GATC 4 cut(s) 183, 282, 465, 529
DpnII GATC 4 cut(s) 181, 280, 463, 527
Ecl136II GAGCTC 3 cut(s) 136, 394, 473
Eco24I GRGCYC 4 cut(s) 138, 324, 396, 475
Eco47I GGWCC 2 cut(s) 578, 714
Eco53kI GAGCTC 3 cut(s) 136, 394, 473
Eco57I CTGAAG 1 cut(s) 690
EcoICRI GAGCTC 3 cut(s) 136, 394, 473
EcoNI CCTNNNNNAGG 1 cut(s) 721
EcoO109I RGGNCCY 2 cut(s) 578, 714
EcoT38I GRGCYC 4 cut(s) 138, 324, 396, 475
FaeI CATG 4 cut(s) 435, 445, 686, 777
FaiI YATR 7 cut(s) 179, 358, 428, 433, 443, 684, 775
FalI AAGNNNNNCTT 2 cut(s) 742, 774
FaqI GGGAC 1 cut(s) 564
FatI CATG 4 cut(s) 431, 441, 682, 773
Fnu4HI GCNGC 5 cut(s) 12, 370, 479, 482, 485
FriOI GRGCYC 4 cut(s) 138, 324, 396, 475
Fsp4HI GCNGC 5 cut(s) 12, 370, 479, 482, 485
FspBI CTAG 1 cut(s) 525
GluI GCNGC 5 cut(s) 12, 370, 479, 482, 485
HapII CCGG 4 cut(s) 123, 216, 648, 704
Hin1II CATG 4 cut(s) 435, 445, 686, 777
HincII GTYRAC 2 cut(s) 144, 163
HindII GTYRAC 2 cut(s) 144, 163
HinfI GANTC 7 cut(s) 65, 91, 164, 239, 326, 383, 419
HpaI GTTAAC 1 cut(s) 144
HpaII CCGG 4 cut(s) 123, 216, 648, 704
HphI GGTGA 3 cut(s) 205, 275, 446
Hpy166II GTNNAC 7 cut(s) 144, 163, 227, 413, 637, 653, 747
Hpy188I TCNGA 2 cut(s) 463, 739
Hpy188III TCNNGA 6 cut(s) 88, 315, 525, 658, 668, 683
Hpy8I GTNNAC 7 cut(s) 144, 163, 227, 413, 637, 653, 747
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 3 cut(s) 90, 184, 522
HpyCH4III ACNGT 4 cut(s) 287, 312, 378, 499
HpyCH4IV ACGT 3 cut(s) 146, 409, 630
HpyCH4V TGCA 3 cut(s) 435, 595, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 484
HpyF3I CTNAG 4 cut(s) 339, 421, 615, 718
HpySE526I ACGT 3 cut(s) 146, 409, 630
Hsp92II CATG 4 cut(s) 435, 445, 686, 777
KspAI GTTAAC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 181, 280, 463, 527
LmnI GCTCC 3 cut(s) 141, 478, 554
LpnPI CCDG 7 cut(s) 6, 136, 229, 561, 661, 681, 717
Lsp1109I GCAGC 3 cut(s) 381, 465, 496
MaeI CTAG 1 cut(s) 525
MaeII ACGT 3 cut(s) 146, 409, 630
MaeIII GTNAC 1 cut(s) 147
MalI GATC 4 cut(s) 183, 282, 465, 529
MbiI CCGCTC 1 cut(s) 549
MboI GATC 4 cut(s) 181, 280, 463, 527
MboII GAAGA 1 cut(s) 239
MhlI GDGCHC 5 cut(s) 138, 324, 396, 475, 655
MluCI AATT 2 cut(s) 295, 686
MlyI GAGTC 3 cut(s) 158, 377, 413
MmeI TCCRAC 2 cut(s) 630, 717
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 3 cut(s) 143, 269, 534
MslI CAYNNNNRTG 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 4 cut(s) 123, 216, 648, 704
Mva1269I GAATGC 1 cut(s) 34
MvnI CGCG 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 52, 484
NdeII GATC 4 cut(s) 181, 280, 463, 527
NlaIII CATG 4 cut(s) 435, 445, 686, 777
NlaIV GGNNCC 2 cut(s) 580, 715
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 147
NruI TCGCGA 1 cut(s) 316
PagI TCATGA 1 cut(s) 682
PcsI WCGNNNNNNNCGW 4 cut(s) 76, 387, 627, 636
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 4 cut(s) 65, 91, 239, 326
PflFI GACNNNGTC 1 cut(s) 733
PkrI GCNGC 5 cut(s) 13, 371, 480, 483, 486
PleI GAGTC 3 cut(s) 158, 377, 413
PpsI GAGTC 3 cut(s) 158, 377, 413
Ppu21I YACGTR 1 cut(s) 631
PpuMI RGGWCCY 2 cut(s) 578, 714
Psp124BI GAGCTC 3 cut(s) 138, 396, 475
Psp5II RGGWCCY 2 cut(s) 578, 714
PspN4I GGNNCC 2 cut(s) 580, 715
PspPI GGNCC 2 cut(s) 578, 714
PspPPI RGGWCCY 2 cut(s) 578, 714
PsyI GACNNNGTC 1 cut(s) 733
RruI TCGCGA 1 cut(s) 316
RsaI GTAC 2 cut(s) 380, 754
RsaNI GTAC 2 cut(s) 379, 753
RseI CAYNNNNRTG 1 cut(s) 446
SacI GAGCTC 3 cut(s) 138, 396, 475
SaqAI TTAA 3 cut(s) 143, 269, 534
SatI GCNGC 5 cut(s) 12, 370, 479, 482, 485
Sau3AI GATC 4 cut(s) 181, 280, 463, 527
Sau96I GGNCC 2 cut(s) 578, 714
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 3 cut(s) 158, 377, 413
SduI GDGCHC 5 cut(s) 138, 324, 396, 475, 655
SinI GGWCC 2 cut(s) 578, 714
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 2 cut(s) 295, 686
SsiI CCGC 5 cut(s) 11, 14, 476, 482, 547
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 3 cut(s) 138, 396, 475
TaaI ACNGT 4 cut(s) 287, 312, 378, 499
TaiI ACGT 3 cut(s) 149, 412, 633
TaqI TCGA 6 cut(s) 94, 104, 324, 347, 390, 417
TasI AATT 2 cut(s) 295, 686
TatI WGTACW 1 cut(s) 752
TauI GCSGC 2 cut(s) 14, 484
TfiI GAWTC 4 cut(s) 65, 91, 239, 326
Tru1I TTAA 3 cut(s) 143, 269, 534
Tru9I TTAA 3 cut(s) 143, 269, 534
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 3 cut(s) 369, 478, 484
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 699, 762
TspGWI ACGGA 1 cut(s) 541
TspRI CASTG 1 cut(s) 381
Tth111I GACNNNGTC 1 cut(s) 733
VneI GTGCAC 1 cut(s) 651
VpaK11BI GGWCC 2 cut(s) 578, 714
XagI CCTNNNNNAGG 1 cut(s) 721
XapI RAATTY 2 cut(s) 295, 686
XbaI TCTAGA 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 1 cut(s) 525
ZrmI AGTACT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.