pycom06g09780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0012437
Physical Location & Seq
Forward (+)
15091892 .. 15093208
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g09780.1

Sequence Viewer

Length: 1065 bp
ATGAAATACAGAAAAGTCAAAGCTCTCAAACCTTCTCCAACTTACCACCACCACTTCTTGCTTCTCTCTACTTTTCTCTCTAGATCTGTCTTTGTGATCGATTACGAAGTTATGGAGGTCGGCGCGCGTAGCTCAAGCGGTAAAGAGCATTTATCATCAACCCCACGTCAAAAATCAGATCAAGAGTTCGGCTCTTGTTATGCCCTTCTAAAGAGAGCTGATGAAGAGCACAAAGTAACAATTCAATCTGAAGCAACGGAAGTTGGAGGAGCTTATAGCGTGAGTGCTAAACAGAATTTGTCCTCAAACCGGCACCATCGCTCACAACAAGAGTTTGGCTCTCGTCCTGCCCCTCAACTGAATCAAAAGAGAGTTGATGATCAAGGGCATAAAGCAATTAACCAATCTAAAGTAATGGACGGAGGAGGAGCTTATAGCATTGGTGCTAAAGAGCACTTATCCTCCAACCCACGTCGACGCTCACAGCAAGAGTTTGACTTTCGTCCTGCTCTTCATTTAAATCAGAAGAAAGTTCAAGACCCCAAAGCAAATGAATCCAAAGTTGTAGCAGCGAATAAGCCTAAGCTTGTGTGGGATTGTGGCAGCTCACTATACGACTCGTTCGAGCTCGACTCGTTCAAACGCCAACTCGACTCGGCCATATCATGCAGAACCATGTCAATGCCTCATTTGTCTGACCGCCGAGCTCCTCCTCCTCCGCCACAACCAGCCACCACAGCCTCCGCCAAGAAACCCTCATCAAATAAGCTCTCCCGTTCGATTCAAAAGCTCCTGCGCTCTGTGTTCAAGCCTAATAATAAACCAAGTAATAATAACAATTCTGGTGTCGTTCTTAGAATCCAAGATCATCAGCAAGCAAATATCAAGGATGGATTTTACGCTGTCTACGATACAACAGGTGCACTTACGACAATTCCAGAAGTGGTTCCTCACGAGTTTGATTTCGGTGGCCTCTCCCCCGAGATTGGGACGTTGATCAGAAGAACTGGATCGGAGCGATTTACAGCTTCAAGTACTGCTAATATTGGTATTTCATATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.3

Weight (kDa)

9.7

Isoelectric Point (pI)

67.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41810 AT5G41810
fragaria_vesca FvH4_5g04150
malus_domestica MD06G1103200.v1.1 MD14G1122100.v1.1
prunus_persica Prupe.5G116000_v2.0.a1
pyrus_communis pycom06g09780
rosa_chinensis RchiOBHm_Chr7g0195351
rosa_laevigata RLG00000004128
rosa_multiflora Rmu_co8178312.1_g000001 Rmu_sc0005377.1_g000004 Rmu_sc0007366.1_g000003
rosa_roxburghii Rroxscaffold_3G00260560
rosa_rugosa Rorug07G0022700
rosa_samantha Rh7AG149900 Rh7BG151300 Rh7CG155100 Rh7DG151000
rosa_wichuraiana Rw7G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 312
AccI GTMKAC 2 cut(s) 475, 906
AccII CGCG 2 cut(s) 125, 127
AciI CCGC 4 cut(s) 138, 700, 719, 744
AclWI GGATC 1 cut(s) 1018
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 1036
AfiI CCNNNNNNNGG 3 cut(s) 309, 986, 987
AgsI TTSAA 6 cut(s) 245, 536, 640, 785, 808, 1032
AjiI CACGTC 2 cut(s) 167, 473
Alw21I GWGCWC 5 cut(s) 231, 456, 630, 709, 925
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 1 cut(s) 1018
Ama87I CYCGRG 1 cut(s) 980
AoxI GGCC 2 cut(s) 657, 970
ApaLI GTGCAC 1 cut(s) 921
ApeKI GCWGC 2 cut(s) 569, 603
ApoI RAATTY 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 945
AspLEI GCGC 3 cut(s) 125, 127, 798
AvaI CYCGRG 1 cut(s) 980
BaeGI GKGCMC 1 cut(s) 925
BanI GGYRCC 1 cut(s) 312
BanII GRGCYC 2 cut(s) 630, 709
BauI CACGAG 1 cut(s) 953
Bbv12I GWGCWC 5 cut(s) 231, 456, 630, 709, 925
BbvI GCAGC 2 cut(s) 581, 615
BccI CCATC 2 cut(s) 324, 884
BclI TGATCA 2 cut(s) 379, 996
BfaI CTAG 1 cut(s) 81
BglII AGATCT 1 cut(s) 83
BisI GCNGC 2 cut(s) 570, 604
BlsI GCNGC 2 cut(s) 571, 605
BmcAI AGTACT 1 cut(s) 1036
BmeT110I CYCGRG 1 cut(s) 980
BmgBI CACGTC 2 cut(s) 167, 473
BmiI GGNNCC 2 cut(s) 314, 948
BoxI GACNNNNGTC 1 cut(s) 501
BplI GAGNNNNNCTC 6 cut(s) 176, 208, 323, 355, 617, 649
Bpu10I CCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 3 cut(s) 309, 986, 987
Bse118I RCCGGY 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 1012
BseCI ATCGAT 1 cut(s) 99
BseGI GGATG 1 cut(s) 895
BseLI CCNNNNNNNGG 3 cut(s) 309, 986, 987
BseNI ACTGG 1 cut(s) 1012
BsePI GCGCGC 1 cut(s) 123
BseRI GAGGAG 6 cut(s) 282, 438, 441, 699, 702, 705
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 2 cut(s) 581, 615
Bsh1236I CGCG 2 cut(s) 125, 127
BshFI GGCC 2 cut(s) 659, 972
BshNI GGYRCC 1 cut(s) 312
BshVI ATCGAT 1 cut(s) 99
BsiHKAI GWGCWC 5 cut(s) 231, 456, 630, 709, 925
BsiHKCI CYCGRG 1 cut(s) 980
BsiSI CCGG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 1003
BslI CCNNNNNNNGG 3 cut(s) 309, 986, 987
BsmFI GGGAC 1 cut(s) 1003
BsnI GGCC 2 cut(s) 659, 972
BsoBI CYCGRG 1 cut(s) 980
Bsp1286I GDGCHC 5 cut(s) 231, 456, 630, 709, 925
Bsp143I GATC 7 cut(s) 83, 96, 178, 379, 865, 996, 1010
BspACI CCGC 4 cut(s) 138, 700, 719, 744
BspANI GGCC 2 cut(s) 659, 972
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 2 cut(s) 125, 127
BspLI GGNNCC 2 cut(s) 314, 948
BspPI GGATC 1 cut(s) 1018
BspQI GCTCTTC 2 cut(s) 219, 516
BspT107I GGYRCC 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 309
BsrI ACTGG 1 cut(s) 1012
BssAI RCCGGY 1 cut(s) 309
BssHII GCGCGC 1 cut(s) 123
BssMI GATC 7 cut(s) 83, 96, 178, 379, 865, 996, 1010
BssSI CACGAG 1 cut(s) 953
Bst2BI CACGAG 1 cut(s) 953
Bst6I CTCTTC 2 cut(s) 219, 516
BstC8I GCNNGC 2 cut(s) 125, 876
BstDEI CTNAG 2 cut(s) 582, 854
BstF5I GGATG 1 cut(s) 895
BstFNI CGCG 2 cut(s) 125, 127
BstHHI GCGC 3 cut(s) 125, 127, 798
BstKTI GATC 7 cut(s) 86, 99, 181, 382, 868, 999, 1013
BstMBI GATC 7 cut(s) 83, 96, 178, 379, 865, 996, 1010
BstMWI GCNNNNNNNGC 2 cut(s) 129, 737
BstPAI GACNNNNGTC 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 925
BstUI CGCG 2 cut(s) 125, 127
BstV1I GCAGC 2 cut(s) 581, 615
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 2 cut(s) 659, 972
BsuTUI ATCGAT 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 302
BtrI CACGTC 2 cut(s) 167, 473
BtsCI GGATG 1 cut(s) 895
Cac8I GCNNGC 2 cut(s) 125, 876
CfoI GCGC 3 cut(s) 125, 127, 798
Cfr10I RCCGGY 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 1 cut(s) 486
Csp6I GTAC 1 cut(s) 1035
CviAII CATG 2 cut(s) 666, 676
CviQI GTAC 1 cut(s) 1035
DdeI CTNAG 2 cut(s) 582, 854
DpnI GATC 7 cut(s) 85, 98, 180, 381, 867, 998, 1012
DpnII GATC 7 cut(s) 83, 96, 178, 379, 865, 996, 1010
DraI TTTAAA 1 cut(s) 519
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 2 cut(s) 219, 516
EarI CTCTTC 2 cut(s) 219, 516
EciI GGCGGA 2 cut(s) 708, 733
Ecl136II GAGCTC 2 cut(s) 628, 707
Eco24I GRGCYC 2 cut(s) 630, 709
Eco53kI GAGCTC 2 cut(s) 628, 707
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 980
EcoICRI GAGCTC 2 cut(s) 628, 707
EcoT38I GRGCYC 2 cut(s) 630, 709
FaeI CATG 2 cut(s) 669, 679
FaqI GGGAC 1 cut(s) 1003
FatI CATG 2 cut(s) 665, 675
FauNDI CATATG 1 cut(s) 1057
FbaI TGATCA 2 cut(s) 379, 996
FblI GTMKAC 2 cut(s) 475, 906
Fnu4HI GCNGC 2 cut(s) 570, 604
FokI GGATG 1 cut(s) 902
FriOI GRGCYC 2 cut(s) 630, 709
Fsp4HI GCNGC 2 cut(s) 570, 604
FspBI CTAG 1 cut(s) 81
GlaI GCGC 3 cut(s) 124, 126, 797
GluI GCNGC 2 cut(s) 570, 604
HaeIII GGCC 2 cut(s) 659, 972
HapII CCGG 1 cut(s) 310
HgaI GACGC 1 cut(s) 486
HhaI GCGC 3 cut(s) 125, 127, 798
Hin1II CATG 2 cut(s) 669, 679
Hin6I GCGC 3 cut(s) 123, 125, 796
HinP1I GCGC 3 cut(s) 123, 125, 796
HincII GTYRAC 1 cut(s) 476
HindII GTYRAC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 7 cut(s) 361, 554, 617, 632, 653, 781, 858
HpaII CCGG 1 cut(s) 310
Hpy166II GTNNAC 3 cut(s) 476, 907, 923
Hpy188I TCNGA 6 cut(s) 178, 250, 525, 697, 1001, 1015
Hpy188III TCNNGA 5 cut(s) 81, 182, 536, 938, 953
Hpy8I GTNNAC 3 cut(s) 476, 907, 923
Hpy99I CGWCG 2 cut(s) 477, 480
HpyAV CCTTC 2 cut(s) 42, 215
HpyCH4IV ACGT 3 cut(s) 166, 472, 992
HpyCH4V TGCA 2 cut(s) 669, 923
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 737
HpyF3I CTNAG 2 cut(s) 582, 854
HpySE526I ACGT 3 cut(s) 166, 472, 992
Hsp92II CATG 2 cut(s) 669, 679
HspAI GCGC 3 cut(s) 123, 125, 796
Ksp22I TGATCA 2 cut(s) 379, 996
Kzo9I GATC 7 cut(s) 83, 96, 178, 379, 865, 996, 1010
LguI GCTCTTC 2 cut(s) 219, 516
LmnI GCTCC 5 cut(s) 269, 428, 712, 795, 1015
LpnPI CCDG 9 cut(s) 323, 360, 519, 741, 806, 828, 903, 951, 993
Lsp1109I GCAGC 2 cut(s) 581, 615
MaeI CTAG 1 cut(s) 81
MaeII ACGT 3 cut(s) 166, 472, 992
MaeIII GTNAC 1 cut(s) 235
MalI GATC 7 cut(s) 85, 98, 180, 381, 867, 998, 1012
MboI GATC 7 cut(s) 83, 96, 178, 379, 865, 996, 1010
MboII GAAGA 4 cut(s) 236, 503, 538, 1014
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 5 cut(s) 231, 456, 630, 709, 925
MluCI AATT 5 cut(s) 240, 295, 396, 838, 933
MlyI GAGTC 3 cut(s) 611, 626, 647
MmeI TCCRAC 3 cut(s) 62, 244, 489
MroXI GAANNNNTTC 1 cut(s) 945
MseI TTAA 3 cut(s) 399, 518, 1063
MslI CAYNNNNRTG 1 cut(s) 680
MspI CCGG 1 cut(s) 310
MvnI CGCG 2 cut(s) 125, 127
MwoI GCNNNNNNNGC 2 cut(s) 129, 737
NdeI CATATG 1 cut(s) 1057
NdeII GATC 7 cut(s) 83, 96, 178, 379, 865, 996, 1010
NlaIII CATG 2 cut(s) 669, 679
NlaIV GGNNCC 2 cut(s) 314, 948
NmeAIII GCCGAG 2 cut(s) 635, 728
PauI GCGCGC 1 cut(s) 123
PciSI GCTCTTC 2 cut(s) 219, 516
PcsI WCGNNNNNNNCGW 2 cut(s) 621, 906
PdmI GAANNNNTTC 1 cut(s) 945
PfeI GAWTC 4 cut(s) 361, 554, 781, 858
PkrI GCNGC 2 cut(s) 571, 605
PleI GAGTC 3 cut(s) 611, 626, 647
PpsI GAGTC 3 cut(s) 611, 626, 647
PshAI GACNNNNGTC 1 cut(s) 501
Psp124BI GAGCTC 2 cut(s) 630, 709
PspN4I GGNNCC 2 cut(s) 314, 948
PsuI RGATCY 1 cut(s) 83
PteI GCGCGC 1 cut(s) 123
RsaI GTAC 1 cut(s) 1036
RsaNI GTAC 1 cut(s) 1035
RseI CAYNNNNRTG 1 cut(s) 680
SacI GAGCTC 2 cut(s) 630, 709
SalI GTCGAC 1 cut(s) 474
SapI GCTCTTC 2 cut(s) 219, 516
SaqAI TTAA 3 cut(s) 399, 518, 1063
SatI GCNGC 2 cut(s) 570, 604
Sau3AI GATC 7 cut(s) 83, 96, 178, 379, 865, 996, 1010
ScaI AGTACT 1 cut(s) 1036
SchI GAGTC 3 cut(s) 611, 626, 647
SduI GDGCHC 5 cut(s) 231, 456, 630, 709, 925
SgrDI CGTCGACG 1 cut(s) 474
SmiI ATTTAAAT 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 5 cut(s) 240, 295, 396, 838, 933
SsiI CCGC 4 cut(s) 138, 700, 719, 744
SspI AATATT 1 cut(s) 1045
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 2 cut(s) 630, 709
SwaI ATTTAAAT 1 cut(s) 519
TaiI ACGT 3 cut(s) 169, 475, 995
TaqI TCGA 6 cut(s) 99, 475, 624, 630, 651, 779
TasI AATT 5 cut(s) 240, 295, 396, 838, 933
TatI WGTACW 1 cut(s) 1034
TfiI GAWTC 4 cut(s) 361, 554, 781, 858
Tru1I TTAA 3 cut(s) 399, 518, 1063
Tru9I TTAA 3 cut(s) 399, 518, 1063
TseI GCWGC 2 cut(s) 569, 603
TspDTI ATGAA 5 cut(s) 17, 237, 503, 567, 1044
TspGWI ACGGA 2 cut(s) 272, 435
VneI GTGCAC 1 cut(s) 921
XapI RAATTY 1 cut(s) 295
XbaI TCTAGA 1 cut(s) 80
XmiI GTMKAC 2 cut(s) 475, 906
XmnI GAANNNNTTC 1 cut(s) 945
XspI CTAG 1 cut(s) 81
ZrmI AGTACT 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.