MD06G1103200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012437
Physical Location & Seq
Forward (+)
24022662 .. 24023312
651 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1103200.v1.1.491

Sequence Viewer

Length: 651 bp
ATGGACGGAGGAGAAGCTTATAGTATTGGTGCTAAAGAGCACTTATGCTCAAACCCACGTCGACGCTCACAGCAAGAGTTTGACTCTCGTCCTGCTCTTCATTTAAATCAGAAGAAAGTTCAAGACCCCAAAGCATATGAATCCAAAGTTGTAGCAGCGAATAAGCCTAAGCCTGTGTGGGATTGTGGCAGCTCACTGTACGACTCGTTCGAGCTCGACTCGTTCAAACGCCAACTCGACTCGGCCATATCATGCAGAACCATGTCAATGCCTCATTTGTCCGACCGCCGAGCTCCTCCTCCTCCGCCACAACCAGCCACCACAGCCTCCACCAAGAAACCCTCATCAAATAAGCTCTCTCGTTCGATTCAAAAGCTCCTGCGCTCTGTGTTCAAGCCTAATAATAAACCAAGTAATAATAACAATTCTGGTGTCGTTCTTAGAGCCCAAGATCATCAGCAAGCAAATATCAAGGATGGATTTTACGTTGTCTACGACACAACAGGTGCACTTACGACAATTCAAGAAGTGGTTCCTCACGAGTTTGATTTCGGTGGCCTCTCCCCCGAGATTGGGACGTTGGTCAGAAGAACTGGATCGGAGCGATTTACAGCTTCTAGTACTGCTAATATTGGTATTTCATGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.75

Weight (kDa)

9.41

Isoelectric Point (pI)

72.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41810 AT5G41810
fragaria_vesca FvH4_5g04150
malus_domestica MD06G1103200.v1.1 MD14G1122100.v1.1
prunus_persica Prupe.5G116000_v2.0.a1
pyrus_communis pycom06g09780
rosa_chinensis RchiOBHm_Chr7g0195351
rosa_laevigata RLG00000004128
rosa_multiflora Rmu_co8178312.1_g000001 Rmu_sc0005377.1_g000004 Rmu_sc0007366.1_g000003
rosa_roxburghii Rroxscaffold_3G00260560
rosa_rugosa Rorug07G0022700
rosa_samantha Rh7AG149900 Rh7BG151300 Rh7CG155100 Rh7DG151000
rosa_wichuraiana Rw7G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 61, 492
AciI CCGC 2 cut(s) 286, 305
AclWI GGATC 1 cut(s) 604
AcoI YGGCCR 1 cut(s) 243
AfaI GTAC 2 cut(s) 200, 622
AfiI CCNNNNNNNGG 2 cut(s) 572, 573
AgsI TTSAA 5 cut(s) 122, 226, 371, 394, 524
AjiI CACGTC 1 cut(s) 59
AluBI AGCT 7 cut(s) 17, 192, 214, 293, 355, 376, 614
AluI AGCT 7 cut(s) 17, 192, 214, 293, 355, 376, 614
Alw21I GWGCWC 4 cut(s) 42, 216, 295, 511
Alw44I GTGCAC 1 cut(s) 507
AlwI GGATC 1 cut(s) 604
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 2 cut(s) 243, 556
ApaLI GTGCAC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 155, 189
Asp700I GAANNNNTTC 1 cut(s) 531
AspLEI GCGC 1 cut(s) 384
AvaI CYCGRG 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 511
BanII GRGCYC 3 cut(s) 216, 295, 448
BauI CACGAG 1 cut(s) 539
Bbv12I GWGCWC 4 cut(s) 42, 216, 295, 511
BbvI GCAGC 2 cut(s) 167, 201
BccI CCATC 1 cut(s) 470
BfaI CTAG 1 cut(s) 618
BisI GCNGC 2 cut(s) 156, 190
BlsI GCNGC 2 cut(s) 157, 191
BmcAI AGTACT 1 cut(s) 622
BmeT110I CYCGRG 1 cut(s) 566
BmgBI CACGTC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 534
BoxI GACNNNNGTC 2 cut(s) 87, 581
BplI GAGNNNNNCTC 4 cut(s) 68, 100, 203, 235
Bpu10I CCTNAGC 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 573
Bse1I ACTGG 1 cut(s) 598
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 572, 573
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 4 cut(s) 24, 285, 288, 291
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 2 cut(s) 167, 201
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 245, 558
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 4 cut(s) 42, 216, 295, 511
BsiHKCI CYCGRG 1 cut(s) 566
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 572, 573
BsmFI GGGAC 1 cut(s) 589
BsnI GGCC 2 cut(s) 245, 558
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 5 cut(s) 42, 216, 295, 448, 511
Bsp143I GATC 2 cut(s) 451, 596
BspACI CCGC 2 cut(s) 286, 305
BspANI GGCC 2 cut(s) 245, 558
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 1 cut(s) 604
BspQI GCTCTTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 598
BssMI GATC 2 cut(s) 451, 596
BssSI CACGAG 1 cut(s) 539
Bst2BI CACGAG 1 cut(s) 539
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 168, 440
BstF5I GGATG 1 cut(s) 481
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 2 cut(s) 454, 599
BstMBI GATC 2 cut(s) 451, 596
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstPAI GACNNNNGTC 2 cut(s) 87, 581
BstSLI GKGCMC 1 cut(s) 511
BstV1I GCAGC 2 cut(s) 167, 201
BsuRI GGCC 2 cut(s) 245, 558
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 481
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 1 cut(s) 384
CseI GACGC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 199, 621
CviAII CATG 3 cut(s) 252, 262, 642
CviQI GTAC 2 cut(s) 199, 621
DdeI CTNAG 2 cut(s) 168, 440
DpnI GATC 2 cut(s) 453, 598
DpnII GATC 2 cut(s) 451, 596
DraI TTTAAA 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 1 cut(s) 294
Ecl136II GAGCTC 2 cut(s) 214, 293
Eco24I GRGCYC 3 cut(s) 216, 295, 448
Eco53kI GAGCTC 2 cut(s) 214, 293
Eco88I CYCGRG 1 cut(s) 566
EcoICRI GAGCTC 2 cut(s) 214, 293
EcoT38I GRGCYC 3 cut(s) 216, 295, 448
FaeI CATG 3 cut(s) 255, 265, 645
FaiI YATR 8 cut(s) 21, 46, 136, 138, 248, 253, 263, 643
FaqI GGGAC 1 cut(s) 589
FatI CATG 3 cut(s) 251, 261, 641
FauNDI CATATG 1 cut(s) 136
FblI GTMKAC 2 cut(s) 61, 492
Fnu4HI GCNGC 2 cut(s) 156, 190
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 3 cut(s) 216, 295, 448
Fsp4HI GCNGC 2 cut(s) 156, 190
FspBI CTAG 1 cut(s) 618
GlaI GCGC 1 cut(s) 383
GluI GCNGC 2 cut(s) 156, 190
HaeIII GGCC 2 cut(s) 245, 558
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 255, 265, 645
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 6 cut(s) 83, 140, 203, 218, 239, 367
Hpy166II GTNNAC 3 cut(s) 62, 493, 509
Hpy188I TCNGA 4 cut(s) 111, 283, 587, 601
Hpy188III TCNNGA 3 cut(s) 122, 524, 539
Hpy8I GTNNAC 3 cut(s) 62, 493, 509
Hpy99I CGWCG 2 cut(s) 63, 66
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 3 cut(s) 58, 486, 578
HpyCH4V TGCA 2 cut(s) 255, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 168, 440
HpySE526I ACGT 3 cut(s) 58, 486, 578
Hsp92II CATG 3 cut(s) 255, 265, 645
HspAI GCGC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 451, 596
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 3 cut(s) 298, 381, 601
LpnPI CCDG 7 cut(s) 105, 186, 327, 392, 414, 489, 579
Lsp1109I GCAGC 2 cut(s) 167, 201
MaeI CTAG 1 cut(s) 618
MaeII ACGT 3 cut(s) 58, 486, 578
MalI GATC 2 cut(s) 453, 598
MboI GATC 2 cut(s) 451, 596
MboII GAAGA 3 cut(s) 89, 124, 600
MhlI GDGCHC 5 cut(s) 42, 216, 295, 448, 511
MluCI AATT 2 cut(s) 424, 519
MlyI GAGTC 4 cut(s) 77, 197, 212, 233
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 8 cut(s) 282, 306, 309, 312, 337, 352, 546, 569
MroXI GAANNNNTTC 1 cut(s) 531
MseI TTAA 2 cut(s) 104, 649
MslI CAYNNNNRTG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 451, 596
NlaIII CATG 3 cut(s) 255, 265, 645
NlaIV GGNNCC 1 cut(s) 534
NmeAIII GCCGAG 2 cut(s) 221, 314
PciSI GCTCTTC 1 cut(s) 102
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 492
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 2 cut(s) 140, 367
PkrI GCNGC 2 cut(s) 157, 191
PleI GAGTC 4 cut(s) 77, 197, 212, 233
PpsI GAGTC 4 cut(s) 77, 197, 212, 233
PshAI GACNNNNGTC 2 cut(s) 87, 581
Psp124BI GAGCTC 2 cut(s) 216, 295
PspN4I GGNNCC 1 cut(s) 534
PsrI GAACNNNNNNTAC 2 cut(s) 191, 223
RsaI GTAC 2 cut(s) 200, 622
RsaNI GTAC 2 cut(s) 199, 621
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 2 cut(s) 216, 295
SalI GTCGAC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 104, 649
SatI GCNGC 2 cut(s) 156, 190
Sau3AI GATC 2 cut(s) 451, 596
ScaI AGTACT 1 cut(s) 622
SchI GAGTC 4 cut(s) 77, 197, 212, 233
SduI GDGCHC 5 cut(s) 42, 216, 295, 448, 511
SgrDI CGTCGACG 1 cut(s) 60
SmiI ATTTAAAT 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 2 cut(s) 424, 519
SsiI CCGC 2 cut(s) 286, 305
SspI AATATT 1 cut(s) 631
SspMI CTAG 1 cut(s) 618
SstI GAGCTC 2 cut(s) 216, 295
SwaI ATTTAAAT 1 cut(s) 105
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 3 cut(s) 61, 489, 581
TaqI TCGA 5 cut(s) 61, 210, 216, 237, 365
TasI AATT 2 cut(s) 424, 519
TatI WGTACW 1 cut(s) 620
TfiI GAWTC 2 cut(s) 140, 367
Tru1I TTAA 2 cut(s) 104, 649
Tru9I TTAA 2 cut(s) 104, 649
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 155, 189
TspDTI ATGAA 3 cut(s) 89, 153, 630
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 201
VneI GTGCAC 1 cut(s) 507
XmiI GTMKAC 2 cut(s) 61, 492
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 1 cut(s) 618
ZrmI AGTACT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.