Rroxscaffold_3G00260560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012437
Physical Location & Seq
Forward (+)
54957948 .. 54958775
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260560.1

Sequence Viewer

Length: 828 bp
ATGGAGGTAGCAGCGGTTTCTGGCGATAAAAAGCACTTATCCTCGCACTCACGACAAGAGTTTGATTCTCGTCCTCCCCGTCCTCTCTTGAATCAAAGGAAATCGATGGAGTTAGGAGTTTCCAGGGGTAAAGAGCCCCTACCCTCGCGCTCACGACTAGAGTTTGACTCTCGCTCTCCTCGCGCCCTCATGGATCAAAAGAAAGCTGTACAGGTAAGAGCCTCCGGTGGTGGTAAACAGAATTTACCCTCACACCCGCGACAAGAGTTCGATTCTCGTCTTCGCCCAAAATCAATGGAGTTAAGATCTTCGGACCGTAAAGAGCATTTACCTGCACAACCACAGAGAGAGCTCGAATCTAGTGAGGCCAAGTCGTCGAGGCGTGTATGGGATTGTGGCAGCTCGCTGTACGACTCGTTCGAGCTCAACTTGTTCAAACGTGAACTCGACTCGGCCATATCATGCAGAAGCATGTCAATGCCTCACCTCTCCGATCGCCGAGCTCCGCTGCCACAGCAACCGCCACCTGCGGTAGTCGCCAAGAAACCCTCAAAACTGTCTAGATCACTTAATAAGCTCCTCCGCTCCGTTTTCAAGCCAAAGACAAGTTCGCGTCCCGTTTTTAGAGTGCAAGAGCAGTCCAACAAAACTAAGGATGGGTTTTACGTAGTTTACGACAAGTCCGGTGCACTTACGACCATTCCTGAAGTAGTTCCTCATGAATTTAGTGGTTTCTCGCCGGAGATTGGGTCCTTGGTGAGGAGGACAGGGTCGGAAAGGTTCACAAGTACTGCTTCCATAAGTTCTATTGGTATTTCCTGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.8

Weight (kDa)

10.25

Isoelectric Point (pI)

80.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41810 AT5G41810
fragaria_vesca FvH4_5g04150
malus_domestica MD06G1103200.v1.1 MD14G1122100.v1.1
prunus_persica Prupe.5G116000_v2.0.a1
pyrus_communis pycom06g09780
rosa_chinensis RchiOBHm_Chr7g0195351
rosa_laevigata RLG00000004128
rosa_multiflora Rmu_co8178312.1_g000001 Rmu_sc0005377.1_g000004 Rmu_sc0007366.1_g000003
rosa_roxburghii Rroxscaffold_3G00260560
rosa_rugosa Rorug07G0022700
rosa_samantha Rh7AG149900 Rh7BG151300 Rh7CG155100 Rh7DG151000
rosa_wichuraiana Rw7G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 2 cut(s) 340, 535
AccBSI CCGCTC 1 cut(s) 585
AccII CGCG 4 cut(s) 148, 183, 259, 613
AciI CCGC 6 cut(s) 14, 257, 506, 521, 530, 583
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 2 cut(s) 241, 722
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 3 cut(s) 210, 410, 790
AfiI CCNNNNNNNGG 2 cut(s) 746, 759
AgsI TTSAA 3 cut(s) 91, 436, 595
AjnI CCWGG 1 cut(s) 122
AjuI GAANNNNNNNTTGG 2 cut(s) 592, 624
AluBI AGCT 6 cut(s) 206, 352, 402, 424, 503, 577
AluI AGCT 6 cut(s) 206, 352, 402, 424, 503, 577
Alw21I GWGCWC 4 cut(s) 354, 426, 505, 691
Alw44I GTGCAC 1 cut(s) 687
AlwI GGATC 1 cut(s) 201
AoxI GGCC 2 cut(s) 366, 453
ApaLI GTGCAC 1 cut(s) 687
ApeKI GCWGC 3 cut(s) 11, 399, 508
ApoI RAATTY 2 cut(s) 241, 722
Asp700I GAANNNNTTC 1 cut(s) 711
AspLEI GCGC 2 cut(s) 150, 185
AspS9I GGNCC 2 cut(s) 313, 750
AsuHPI GGTGA 2 cut(s) 476, 769
AvaII GGWCC 2 cut(s) 313, 750
BaeGI GKGCMC 1 cut(s) 691
BanII GRGCYC 4 cut(s) 138, 354, 426, 505
BbsI GAAGAC 1 cut(s) 272
Bbv12I GWGCWC 4 cut(s) 354, 426, 505, 691
BbvI GCAGC 3 cut(s) 23, 411, 495
BccI CCATC 2 cut(s) 100, 650
BciT130I CCWGG 1 cut(s) 124
BfaI CTAG 4 cut(s) 158, 360, 561, 826
BfuAI ACCTGC 2 cut(s) 340, 535
BglII AGATCT 1 cut(s) 305
BisI GCNGC 3 cut(s) 12, 400, 509
BlsI GCNGC 3 cut(s) 13, 401, 510
BmcAI AGTACT 1 cut(s) 790
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 2 cut(s) 313, 750
BmgT120I GGNCC 2 cut(s) 313, 750
BmiI GGNNCC 1 cut(s) 751
BmrFI CCNGG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 272
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bsa29I ATCGAT 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 667
BsaJI CCNNGG 2 cut(s) 123, 753
BsaWI WCCGGW 2 cut(s) 224, 683
BsaXI ACNNNNNCTCC 2 cut(s) 734, 764
Bsc4I CCNNNNNNNGG 2 cut(s) 746, 759
BseBI CCWGG 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 123, 753
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 2 cut(s) 746, 759
BseRI GAGGAG 3 cut(s) 168, 569, 775
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 3 cut(s) 23, 411, 495
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 4 cut(s) 148, 183, 259, 613
Bsh1285I CGRYCG 1 cut(s) 496
BshFI GGCC 2 cut(s) 368, 455
BshVI ATCGAT 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 496
BsiHKAI GWGCWC 4 cut(s) 354, 426, 505, 691
BsiSI CCGG 3 cut(s) 225, 684, 740
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 2 cut(s) 746, 759
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 2 cut(s) 368, 455
Bsp1286I GDGCHC 5 cut(s) 138, 354, 426, 505, 691
Bsp1407I TGTACA 1 cut(s) 208
Bsp143I GATC 4 cut(s) 193, 305, 493, 563
BspACI CCGC 6 cut(s) 14, 257, 506, 521, 530, 583
BspANI GGCC 2 cut(s) 368, 455
BspDI ATCGAT 1 cut(s) 104
BspFNI CGCG 4 cut(s) 148, 183, 259, 613
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 751
BspMI ACCTGC 2 cut(s) 340, 535
BspPI GGATC 1 cut(s) 201
BsrBI CCGCTC 1 cut(s) 585
BsrGI TGTACA 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 123, 753
BssMI GATC 4 cut(s) 193, 305, 493, 563
BssT1I CCWWGG 1 cut(s) 753
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 317, 558
BstAUI TGTACA 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 1 cut(s) 651
BstENI CCTNNNNNAGG 1 cut(s) 757
BstF5I GGATG 1 cut(s) 661
BstFNI CGCG 4 cut(s) 148, 183, 259, 613
BstHHI GCGC 2 cut(s) 150, 185
BstKTI GATC 4 cut(s) 196, 308, 496, 566
BstMBI GATC 4 cut(s) 193, 305, 493, 563
BstMCI CGRYCG 1 cut(s) 496
BstMWI GCNNNNNNNGC 3 cut(s) 180, 514, 536
BstNI CCWGG 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 691
BstSNI TACGTA 1 cut(s) 667
BstUI CGCG 4 cut(s) 148, 183, 259, 613
BstV1I GCAGC 3 cut(s) 23, 411, 495
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
Bsu15I ATCGAT 1 cut(s) 104
BsuRI GGCC 2 cut(s) 368, 455
BsuTUI ATCGAT 1 cut(s) 104
BtsCI GGATG 1 cut(s) 661
BveI ACCTGC 2 cut(s) 340, 535
Cac8I GCNNGC 1 cut(s) 404
CciI TCATGA 1 cut(s) 718
CfoI GCGC 2 cut(s) 150, 185
Cfr13I GGNCC 2 cut(s) 313, 750
ClaI ATCGAT 1 cut(s) 104
CpoI CGGWCCG 1 cut(s) 313
CseI GACGC 1 cut(s) 602
Csp6I GTAC 3 cut(s) 209, 409, 789
CspI CGGWCCG 1 cut(s) 313
CviAII CATG 4 cut(s) 190, 462, 472, 719
CviQI GTAC 3 cut(s) 209, 409, 789
DdeI CTNAG 1 cut(s) 651
DpnI GATC 4 cut(s) 195, 307, 495, 565
DpnII GATC 4 cut(s) 193, 305, 493, 563
EaeI YGGCCR 1 cut(s) 453
Ecl136II GAGCTC 3 cut(s) 352, 424, 503
Eco105I TACGTA 1 cut(s) 667
Eco130I CCWWGG 1 cut(s) 753
Eco24I GRGCYC 4 cut(s) 138, 354, 426, 505
Eco47I GGWCC 2 cut(s) 313, 750
Eco53kI GAGCTC 3 cut(s) 352, 424, 503
Eco57I CTGAAG 1 cut(s) 726
EcoICRI GAGCTC 3 cut(s) 352, 424, 503
EcoNI CCTNNNNNAGG 1 cut(s) 757
EcoO109I RGGNCCY 1 cut(s) 750
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 753
EcoT38I GRGCYC 4 cut(s) 138, 354, 426, 505
ErhI CCWWGG 1 cut(s) 753
FaeI CATG 4 cut(s) 193, 465, 475, 722
FaiI YATR 7 cut(s) 191, 388, 458, 463, 473, 720, 800
FalI AAGNNNNNCTT 2 cut(s) 778, 810
FaqI GGGAC 1 cut(s) 600
FatI CATG 4 cut(s) 189, 461, 471, 718
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 12, 400, 509
FokI GGATG 1 cut(s) 668
FriOI GRGCYC 4 cut(s) 138, 354, 426, 505
Fsp4HI GCNGC 3 cut(s) 12, 400, 509
FspBI CTAG 4 cut(s) 158, 360, 561, 826
GlaI GCGC 2 cut(s) 149, 184
GluI GCNGC 3 cut(s) 12, 400, 509
HaeIII GGCC 2 cut(s) 368, 455
HapII CCGG 3 cut(s) 225, 684, 740
HgaI GACGC 1 cut(s) 602
HhaI GCGC 2 cut(s) 150, 185
Hin1II CATG 4 cut(s) 193, 465, 475, 722
Hin6I GCGC 2 cut(s) 148, 183
HinP1I GCGC 2 cut(s) 148, 183
HinfI GANTC 7 cut(s) 65, 91, 167, 272, 356, 413, 449
HpaII CCGG 3 cut(s) 225, 684, 740
HphI GGTGA 2 cut(s) 476, 769
Hpy166II GTNNAC 5 cut(s) 236, 443, 673, 689, 783
Hpy188I TCNGA 3 cut(s) 313, 493, 775
Hpy188III TCNNGA 6 cut(s) 51, 88, 153, 561, 704, 719
Hpy8I GTNNAC 5 cut(s) 236, 443, 673, 689, 783
Hpy99I CGWCG 1 cut(s) 379
HpyCH4III ACNGT 2 cut(s) 317, 558
HpyCH4IV ACGT 2 cut(s) 439, 666
HpyCH4V TGCA 4 cut(s) 335, 465, 631, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 514, 536
HpyF3I CTNAG 1 cut(s) 651
HpySE526I ACGT 2 cut(s) 439, 666
Hsp92II CATG 4 cut(s) 193, 465, 475, 722
HspAI GCGC 2 cut(s) 148, 183
Kzo9I GATC 4 cut(s) 193, 305, 493, 563
LmnI GCTCC 3 cut(s) 508, 582, 590
Lsp1109I GCAGC 3 cut(s) 23, 411, 495
MaeI CTAG 4 cut(s) 158, 360, 561, 826
MaeII ACGT 2 cut(s) 439, 666
MalI GATC 4 cut(s) 195, 307, 495, 565
MbiI CCGCTC 1 cut(s) 585
MboI GATC 4 cut(s) 193, 305, 493, 563
MboII GAAGA 2 cut(s) 272, 300
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 5 cut(s) 138, 354, 426, 505, 691
MluCI AATT 2 cut(s) 241, 722
MlyI GAGTC 3 cut(s) 161, 407, 443
MmeI TCCRAC 2 cut(s) 666, 753
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 2 cut(s) 302, 570
MslI CAYNNNNRTG 1 cut(s) 476
MspA1I CMGCKG 2 cut(s) 14, 508
MspI CCGG 3 cut(s) 225, 684, 740
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 4 cut(s) 148, 183, 259, 613
MwoI GCNNNNNNNGC 3 cut(s) 180, 514, 536
NdeII GATC 4 cut(s) 193, 305, 493, 563
NlaIII CATG 4 cut(s) 193, 465, 475, 722
NlaIV GGNNCC 1 cut(s) 751
NmeAIII GCCGAG 2 cut(s) 431, 524
NspI RCATGY 1 cut(s) 475
PagI TCATGA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 535
PcsI WCGNNNNNNNCGW 3 cut(s) 76, 417, 672
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 4 cut(s) 65, 91, 272, 356
PflFI GACNNNGTC 1 cut(s) 769
PkrI GCNGC 3 cut(s) 13, 401, 510
Ple19I CGATCG 1 cut(s) 496
PleI GAGTC 3 cut(s) 161, 407, 443
PpsI GAGTC 3 cut(s) 161, 407, 443
Ppu21I YACGTR 1 cut(s) 667
PpuMI RGGWCCY 1 cut(s) 750
Psp124BI GAGCTC 3 cut(s) 354, 426, 505
Psp5II RGGWCCY 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 751
PspPI GGNCC 2 cut(s) 313, 750
PspPPI RGGWCCY 1 cut(s) 750
PsrI GAACNNNNNNTAC 2 cut(s) 401, 433
PsuI RGATCY 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 769
PvuI CGATCG 1 cut(s) 496
RsaI GTAC 3 cut(s) 210, 410, 790
RsaNI GTAC 3 cut(s) 209, 409, 789
RseI CAYNNNNRTG 1 cut(s) 476
Rsr2I CGGWCCG 1 cut(s) 313
RsrII CGGWCCG 1 cut(s) 313
SacI GAGCTC 3 cut(s) 354, 426, 505
SaqAI TTAA 2 cut(s) 302, 570
SatI GCNGC 3 cut(s) 12, 400, 509
Sau3AI GATC 4 cut(s) 193, 305, 493, 563
Sau96I GGNCC 2 cut(s) 313, 750
ScaI AGTACT 1 cut(s) 790
SchI GAGTC 3 cut(s) 161, 407, 443
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 5 cut(s) 138, 354, 426, 505, 691
SinI GGWCC 2 cut(s) 313, 750
SmiMI CAYNNNNRTG 1 cut(s) 476
SnaBI TACGTA 1 cut(s) 667
Sse9I AATT 2 cut(s) 241, 722
SsiI CCGC 6 cut(s) 14, 257, 506, 521, 530, 583
SspMI CTAG 4 cut(s) 158, 360, 561, 826
SstI GAGCTC 3 cut(s) 354, 426, 505
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 2 cut(s) 317, 558
TaiI ACGT 2 cut(s) 442, 669
TaqI TCGA 6 cut(s) 104, 270, 354, 377, 420, 447
TasI AATT 2 cut(s) 241, 722
TatI WGTACW 2 cut(s) 208, 788
TfiI GAWTC 4 cut(s) 65, 91, 272, 356
Tru1I TTAA 2 cut(s) 302, 570
Tru9I TTAA 2 cut(s) 302, 570
TseI GCWGC 3 cut(s) 11, 399, 508
TspDTI ATGAA 1 cut(s) 735
TspGWI ACGGA 1 cut(s) 577
Tth111I GACNNNGTC 1 cut(s) 769
VneI GTGCAC 1 cut(s) 687
VpaK11BI GGWCC 2 cut(s) 313, 750
XagI CCTNNNNNAGG 1 cut(s) 757
XapI RAATTY 2 cut(s) 241, 722
XbaI TCTAGA 1 cut(s) 560
XceI RCATGY 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 4 cut(s) 158, 360, 561, 826
ZrmI AGTACT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.