RchiOBHm_Chr7g0195351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012437
Physical Location & Seq
Reverse (-)
13219671 .. 13221146
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17470

Sequence Viewer

Length: 834 bp
ATGGAGGTAGCAGCAGCGGTTTCTGGCGATAAAAAGCACTTATCCTCGCACTCACGACAAGAGTTTGATTCTCGTCCTCCCCGTCCTCTCTTGAATCAAAGGAAATCGATGGAGTTAGGAGTTTCCAGGGGTAAAGAGCCCCTACCCTCGCGTTCACGACAAGAGTTTGACTCTCGCTCACCTCGCGCTCTCATGGATCAAAAGAAAGCTGTAGAGGTAAGAGCCTCCGGTGGTGGTAAACAGAATTTACCCTCACACCCGCGACAAGAGTTCGATTCTCGTCTTCGCCCAAAATCAATGGAGTTAAGATCTTCGGACCGTAAAGAGCATTTGCCTGCACAACCACAGAGAGAGCTCGAATCTAGTGAGGCCAAGTCGTCGAGGCGTGTATGGGATTGTGGCAGCTCGCTGTACGACTCGTTCGAGCTCAACTTGTTCAAACGTGAACTCGACTCGGCCATATCATGCAGAACCATGTCAATGCCTCACCTCTCCGATCGCCGAGCTCCGCTGCCCCAGCAGCCGCCACCCGCGGTAGTCGCCAAGAAACCCTCAAAACTCTCTAGATCACTTAATAAGCTCCTCCGCTCAGTTTTCAAGCCAAAGACAAGTTCAGGTCCCGTTTTTAGAGTGCAAGAGCAGTCCAACAAAACTAAGGATGGGTTTTACGTAGTTTACGACAAGTCCGGTGCACTTACGACCATTCCTGAAGTAGTTCCTCATGAATTTAGTGGTTTCTCGCCGGAGATTGGGTCCTTGGTGAGGAGGACAGGGTCGGAAAGGTTCACAAGTACTACTGCTTCCATAAGTTCTATTGGTATTTCCTGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

30.91

Weight (kDa)

10.1

Isoelectric Point (pI)

79.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41810 AT5G41810
fragaria_vesca FvH4_5g04150
malus_domestica MD06G1103200.v1.1 MD14G1122100.v1.1
prunus_persica Prupe.5G116000_v2.0.a1
pyrus_communis pycom06g09780
rosa_chinensis RchiOBHm_Chr7g0195351
rosa_laevigata RLG00000004128
rosa_multiflora Rmu_co8178312.1_g000001 Rmu_sc0005377.1_g000004 Rmu_sc0007366.1_g000003
rosa_roxburghii Rroxscaffold_3G00260560
rosa_rugosa Rorug07G0022700
rosa_samantha Rh7AG149900 Rh7BG151300 Rh7CG155100 Rh7DG151000
rosa_wichuraiana Rw7G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 588
AccII CGCG 4 cut(s) 151, 186, 262, 533
AciI CCGC 7 cut(s) 17, 260, 509, 524, 531, 533, 586
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 2 cut(s) 244, 725
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 2 cut(s) 413, 793
AfiI CCNNNNNNNGG 2 cut(s) 749, 762
AgsI TTSAA 3 cut(s) 94, 439, 598
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 595, 627
AluBI AGCT 6 cut(s) 209, 355, 405, 427, 506, 580
AluI AGCT 6 cut(s) 209, 355, 405, 427, 506, 580
Alw21I GWGCWC 4 cut(s) 357, 429, 508, 694
Alw44I GTGCAC 1 cut(s) 690
AlwI GGATC 1 cut(s) 204
AoxI GGCC 2 cut(s) 369, 456
ApaLI GTGCAC 1 cut(s) 690
ApeKI GCWGC 5 cut(s) 11, 14, 402, 511, 520
ApoI RAATTY 2 cut(s) 244, 725
Asp700I GAANNNNTTC 1 cut(s) 714
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 3 cut(s) 316, 617, 753
AsuHPI GGTGA 3 cut(s) 171, 479, 772
AvaII GGWCC 3 cut(s) 316, 617, 753
BaeGI GKGCMC 1 cut(s) 694
BanII GRGCYC 4 cut(s) 141, 357, 429, 508
BarI GAAGNNNNNNTAC 2 cut(s) 784, 816
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 4 cut(s) 357, 429, 508, 694
BbvI GCAGC 5 cut(s) 23, 26, 414, 498, 532
BccI CCATC 2 cut(s) 103, 653
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 2 cut(s) 363, 564
BfmI CTRYAG 1 cut(s) 210
BglII AGATCT 1 cut(s) 308
BisI GCNGC 6 cut(s) 12, 15, 403, 512, 521, 524
BlsI GCNGC 6 cut(s) 13, 16, 404, 513, 522, 525
BmcAI AGTACT 1 cut(s) 793
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 3 cut(s) 316, 617, 753
BmgT120I GGNCC 3 cut(s) 316, 617, 753
BmiI GGNNCC 2 cut(s) 619, 754
BmrFI CCNGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 155, 187
Bsa29I ATCGAT 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 670
BsaJI CCNNGG 3 cut(s) 126, 531, 756
BsaWI WCCGGW 2 cut(s) 227, 686
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 2 cut(s) 749, 762
BseBI CCWGG 1 cut(s) 127
BseCI ATCGAT 1 cut(s) 107
BseDI CCNNGG 3 cut(s) 126, 531, 756
BseGI GGATG 1 cut(s) 664
BseLI CCNNNNNNNGG 2 cut(s) 749, 762
BseMII CTCAG 1 cut(s) 603
BseRI GAGGAG 2 cut(s) 572, 778
BseSI GKGCMC 1 cut(s) 694
BseXI GCAGC 5 cut(s) 23, 26, 414, 498, 532
BseYI CCCAGC 1 cut(s) 516
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 4 cut(s) 151, 186, 262, 533
Bsh1285I CGRYCG 1 cut(s) 499
BshFI GGCC 2 cut(s) 371, 458
BshVI ATCGAT 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 499
BsiHKAI GWGCWC 4 cut(s) 357, 429, 508, 694
BsiSI CCGG 3 cut(s) 228, 687, 743
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 749, 762
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 2 cut(s) 371, 458
Bsp1286I GDGCHC 5 cut(s) 141, 357, 429, 508, 694
Bsp143I GATC 4 cut(s) 196, 308, 496, 566
BspACI CCGC 7 cut(s) 17, 260, 509, 524, 531, 533, 586
BspANI GGCC 2 cut(s) 371, 458
BspCNI CTCAG 1 cut(s) 602
BspDI ATCGAT 1 cut(s) 107
BspFNI CGCG 4 cut(s) 151, 186, 262, 533
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 2 cut(s) 619, 754
BspPI GGATC 1 cut(s) 204
BsrBI CCGCTC 1 cut(s) 588
BssECI CCNNGG 3 cut(s) 126, 531, 756
BssMI GATC 4 cut(s) 196, 308, 496, 566
BssT1I CCWWGG 1 cut(s) 756
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 320
BstBAI YACGTR 1 cut(s) 670
BstC8I GCNNGC 2 cut(s) 336, 407
BstDEI CTNAG 2 cut(s) 589, 654
BstDSI CCRYGG 1 cut(s) 531
BstENI CCTNNNNNAGG 1 cut(s) 760
BstF5I GGATG 1 cut(s) 664
BstFNI CGCG 4 cut(s) 151, 186, 262, 533
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 4 cut(s) 199, 311, 499, 569
BstMBI GATC 4 cut(s) 196, 308, 496, 566
BstMCI CGRYCG 1 cut(s) 499
BstMWI GCNNNNNNNGC 4 cut(s) 183, 517, 520, 539
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 694
BstSNI TACGTA 1 cut(s) 670
BstUI CGCG 4 cut(s) 151, 186, 262, 533
BstV1I GCAGC 5 cut(s) 23, 26, 414, 498, 532
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 107
BsuRI GGCC 2 cut(s) 371, 458
BsuTUI ATCGAT 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 1 cut(s) 664
Cac8I GCNNGC 2 cut(s) 336, 407
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 316, 617, 753
Cfr42I CCGCGG 1 cut(s) 534
ClaI ATCGAT 1 cut(s) 107
CpoI CGGWCCG 1 cut(s) 316
Csp6I GTAC 2 cut(s) 412, 792
CspI CGGWCCG 1 cut(s) 316
CviAII CATG 4 cut(s) 193, 465, 475, 722
CviQI GTAC 2 cut(s) 412, 792
DdeI CTNAG 2 cut(s) 589, 654
DpnI GATC 4 cut(s) 198, 310, 498, 568
DpnII GATC 4 cut(s) 196, 308, 496, 566
EaeI YGGCCR 1 cut(s) 456
Ecl136II GAGCTC 3 cut(s) 355, 427, 506
Eco105I TACGTA 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 756
Eco24I GRGCYC 4 cut(s) 141, 357, 429, 508
Eco47I GGWCC 3 cut(s) 316, 617, 753
Eco53kI GAGCTC 3 cut(s) 355, 427, 506
Eco57I CTGAAG 1 cut(s) 729
EcoICRI GAGCTC 3 cut(s) 355, 427, 506
EcoNI CCTNNNNNAGG 1 cut(s) 760
EcoO109I RGGNCCY 2 cut(s) 617, 753
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 756
EcoT38I GRGCYC 4 cut(s) 141, 357, 429, 508
ErhI CCWWGG 1 cut(s) 756
FaeI CATG 4 cut(s) 196, 468, 478, 725
FaiI YATR 7 cut(s) 194, 391, 461, 466, 476, 723, 806
FaqI GGGAC 1 cut(s) 603
FatI CATG 4 cut(s) 192, 464, 474, 721
FauI CCCGC 2 cut(s) 267, 538
Fnu4HI GCNGC 6 cut(s) 12, 15, 403, 512, 521, 524
FokI GGATG 1 cut(s) 671
FriOI GRGCYC 4 cut(s) 141, 357, 429, 508
Fsp4HI GCNGC 6 cut(s) 12, 15, 403, 512, 521, 524
FspBI CTAG 2 cut(s) 363, 564
GlaI GCGC 1 cut(s) 187
GluI GCNGC 6 cut(s) 12, 15, 403, 512, 521, 524
GsaI CCCAGC 1 cut(s) 520
HaeIII GGCC 2 cut(s) 371, 458
HapII CCGG 3 cut(s) 228, 687, 743
HhaI GCGC 1 cut(s) 188
Hin1II CATG 4 cut(s) 196, 468, 478, 725
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 7 cut(s) 68, 94, 170, 275, 359, 416, 452
HpaII CCGG 3 cut(s) 228, 687, 743
HphI GGTGA 3 cut(s) 171, 479, 772
Hpy166II GTNNAC 6 cut(s) 155, 239, 446, 676, 692, 786
Hpy188I TCNGA 3 cut(s) 316, 496, 778
Hpy188III TCNNGA 6 cut(s) 54, 91, 156, 564, 707, 722
Hpy8I GTNNAC 6 cut(s) 155, 239, 446, 676, 692, 786
Hpy99I CGWCG 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 2 cut(s) 442, 669
HpyCH4V TGCA 4 cut(s) 338, 468, 634, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 517, 520, 539
HpyF3I CTNAG 2 cut(s) 589, 654
HpySE526I ACGT 2 cut(s) 442, 669
Hsp92II CATG 4 cut(s) 196, 468, 478, 725
HspAI GCGC 1 cut(s) 186
KspI CCGCGG 1 cut(s) 534
Kzo9I GATC 4 cut(s) 196, 308, 496, 566
LmnI GCTCC 2 cut(s) 511, 585
Lsp1109I GCAGC 5 cut(s) 23, 26, 414, 498, 532
MaeI CTAG 2 cut(s) 363, 564
MaeII ACGT 2 cut(s) 442, 669
MalI GATC 4 cut(s) 198, 310, 498, 568
MbiI CCGCTC 1 cut(s) 588
MboI GATC 4 cut(s) 196, 308, 496, 566
MboII GAAGA 2 cut(s) 275, 303
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 5 cut(s) 141, 357, 429, 508, 694
MluCI AATT 2 cut(s) 244, 725
MlyI GAGTC 3 cut(s) 164, 410, 446
MmeI TCCRAC 2 cut(s) 669, 756
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 2 cut(s) 305, 573
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 3 cut(s) 17, 511, 533
MspI CCGG 3 cut(s) 228, 687, 743
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 4 cut(s) 151, 186, 262, 533
MwoI GCNNNNNNNGC 4 cut(s) 183, 517, 520, 539
NdeII GATC 4 cut(s) 196, 308, 496, 566
NlaIII CATG 4 cut(s) 196, 468, 478, 725
NlaIV GGNNCC 2 cut(s) 619, 754
NmeAIII GCCGAG 2 cut(s) 434, 527
PagI TCATGA 1 cut(s) 721
PcsI WCGNNNNNNNCGW 3 cut(s) 79, 420, 675
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 4 cut(s) 68, 94, 275, 359
PflFI GACNNNGTC 1 cut(s) 772
PkrI GCNGC 6 cut(s) 13, 16, 404, 513, 522, 525
Ple19I CGATCG 1 cut(s) 499
PleI GAGTC 3 cut(s) 164, 410, 446
PpsI GAGTC 3 cut(s) 164, 410, 446
Ppu21I YACGTR 1 cut(s) 670
PpuMI RGGWCCY 2 cut(s) 617, 753
Psp124BI GAGCTC 3 cut(s) 357, 429, 508
Psp5II RGGWCCY 2 cut(s) 617, 753
Psp6I CCWGG 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 516
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 619, 754
PspPI GGNCC 3 cut(s) 316, 617, 753
PspPPI RGGWCCY 2 cut(s) 617, 753
PsrI GAACNNNNNNTAC 2 cut(s) 404, 436
PsuI RGATCY 1 cut(s) 308
PsyI GACNNNGTC 1 cut(s) 772
PvuI CGATCG 1 cut(s) 499
RsaI GTAC 2 cut(s) 413, 793
RsaNI GTAC 2 cut(s) 412, 792
RseI CAYNNNNRTG 1 cut(s) 479
Rsr2I CGGWCCG 1 cut(s) 316
RsrII CGGWCCG 1 cut(s) 316
SacI GAGCTC 3 cut(s) 357, 429, 508
SacII CCGCGG 1 cut(s) 534
SaqAI TTAA 2 cut(s) 305, 573
SatI GCNGC 6 cut(s) 12, 15, 403, 512, 521, 524
Sau3AI GATC 4 cut(s) 196, 308, 496, 566
Sau96I GGNCC 3 cut(s) 316, 617, 753
ScaI AGTACT 1 cut(s) 793
SchI GAGTC 3 cut(s) 164, 410, 446
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 5 cut(s) 141, 357, 429, 508, 694
SfcI CTRYAG 1 cut(s) 210
Sfr303I CCGCGG 1 cut(s) 534
SgrBI CCGCGG 1 cut(s) 534
SinI GGWCC 3 cut(s) 316, 617, 753
SmiMI CAYNNNNRTG 1 cut(s) 479
SnaBI TACGTA 1 cut(s) 670
Sse9I AATT 2 cut(s) 244, 725
SsiI CCGC 7 cut(s) 17, 260, 509, 524, 531, 533, 586
SspMI CTAG 2 cut(s) 363, 564
SstI GAGCTC 3 cut(s) 357, 429, 508
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 2 cut(s) 445, 672
TaqI TCGA 6 cut(s) 107, 273, 357, 380, 423, 450
TasI AATT 2 cut(s) 244, 725
TatI WGTACW 1 cut(s) 791
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 4 cut(s) 68, 94, 275, 359
Tru1I TTAA 2 cut(s) 305, 573
Tru9I TTAA 2 cut(s) 305, 573
TseI GCWGC 5 cut(s) 11, 14, 402, 511, 520
TspDTI ATGAA 1 cut(s) 738
Tth111I GACNNNGTC 1 cut(s) 772
VneI GTGCAC 1 cut(s) 690
VpaK11BI GGWCC 3 cut(s) 316, 617, 753
XagI CCTNNNNNAGG 1 cut(s) 760
XapI RAATTY 2 cut(s) 244, 725
XbaI TCTAGA 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 2 cut(s) 363, 564
ZrmI AGTACT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.