Rmu_sc0005377.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005377.1
OG0012437
Physical Location & Seq
Reverse (-)
12035 .. 12394
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005377.1_g000004.1.cds

Sequence Viewer

Length: 360 bp
atgtcaatgcctcacctctccgatcgccgagctccgctgccccagcagccgccacccgcggtagtcgccaagaaaccctcaaaactctctagatcacttaataagctcctccgctcagttttcaagccaaagacaagttcaggtcccgtttttagagtgcaagagcagtccaacaaaactaaggatgggttttacgtagtttacgacaagtccggtgcacttacgaccattcctgaagtagttcctcatgaatttagtggtttctcgccggagattgggtccttggtgaggaggacagggtcggaaaggttcacaagtactactgcttccataagttctattggtatttcctgtgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.92

Weight (kDa)

10.23

Isoelectric Point (pI)

78.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41810 AT5G41810
fragaria_vesca FvH4_5g04150
malus_domestica MD06G1103200.v1.1 MD14G1122100.v1.1
prunus_persica Prupe.5G116000_v2.0.a1
pyrus_communis pycom06g09780
rosa_chinensis RchiOBHm_Chr7g0195351
rosa_laevigata RLG00000004128
rosa_multiflora Rmu_co8178312.1_g000001 Rmu_sc0005377.1_g000004 Rmu_sc0007366.1_g000003
rosa_roxburghii Rroxscaffold_3G00260560
rosa_rugosa Rorug07G0022700
rosa_samantha Rh7AG149900 Rh7BG151300 Rh7CG155100 Rh7DG151000
rosa_wichuraiana Rw7G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 114
AccII CGCG 1 cut(s) 59
AciI CCGC 5 cut(s) 35, 50, 57, 59, 112
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 2 cut(s) 275, 288
AgsI TTSAA 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 2 cut(s) 32, 106
AluI AGCT 2 cut(s) 32, 106
Alw21I GWGCWC 2 cut(s) 34, 220
Alw44I GTGCAC 1 cut(s) 216
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 37, 46
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 143, 279
AsuHPI GGTGA 2 cut(s) 5, 298
AvaII GGWCC 2 cut(s) 143, 279
BaeGI GKGCMC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 34
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
Bbv12I GWGCWC 2 cut(s) 34, 220
BbvI GCAGC 2 cut(s) 24, 58
BccI CCATC 1 cut(s) 179
BfaI CTAG 1 cut(s) 90
BisI GCNGC 3 cut(s) 38, 47, 50
BlsI GCNGC 3 cut(s) 39, 48, 51
BmcAI AGTACT 1 cut(s) 319
Bme18I GGWCC 2 cut(s) 143, 279
BmgT120I GGNCC 2 cut(s) 143, 279
BmiI GGNNCC 2 cut(s) 145, 280
BsaAI YACGTR 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 57, 282
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 288
BseDI CCNNGG 2 cut(s) 57, 282
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 275, 288
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 98, 304
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 2 cut(s) 24, 58
BseYI CCCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 34, 220
BsiSI CCGG 2 cut(s) 213, 269
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 275, 288
BsmFI GGGAC 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 34, 220
Bsp143I GATC 2 cut(s) 22, 92
BspACI CCGC 5 cut(s) 35, 50, 57, 59, 112
BspCNI CTCAG 1 cut(s) 128
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 145, 280
BsrBI CCGCTC 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 57, 282
BssMI GATC 2 cut(s) 22, 92
BssT1I CCWWGG 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 196
BstDEI CTNAG 2 cut(s) 115, 180
BstDSI CCRYGG 1 cut(s) 57
BstENI CCTNNNNNAGG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 59
BstKTI GATC 2 cut(s) 25, 95
BstMBI GATC 2 cut(s) 22, 92
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 3 cut(s) 43, 46, 65
BstSLI GKGCMC 1 cut(s) 220
BstSNI TACGTA 1 cut(s) 196
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 24, 58
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 190
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 143, 279
Cfr42I CCGCGG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 318
CviAII CATG 1 cut(s) 248
CviJI RGCY 4 cut(s) 32, 49, 106, 127
CviKI_1 RGCY 4 cut(s) 32, 49, 106, 127
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 2 cut(s) 115, 180
DpnI GATC 2 cut(s) 24, 94
DpnII GATC 2 cut(s) 22, 92
Ecl136II GAGCTC 1 cut(s) 32
Eco105I TACGTA 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 143, 279
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 286
EcoO109I RGGNCCY 2 cut(s) 143, 279
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 251
FaiI YATR 2 cut(s) 249, 332
FaqI GGGAC 1 cut(s) 129
FatI CATG 1 cut(s) 247
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 38, 47, 50
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 3 cut(s) 38, 47, 50
FspBI CTAG 1 cut(s) 90
GluI GCNGC 3 cut(s) 38, 47, 50
GsaI CCCAGC 1 cut(s) 46
HapII CCGG 2 cut(s) 213, 269
Hin1II CATG 1 cut(s) 251
HpaII CCGG 2 cut(s) 213, 269
HphI GGTGA 2 cut(s) 5, 298
Hpy166II GTNNAC 3 cut(s) 202, 218, 312
Hpy188I TCNGA 2 cut(s) 22, 304
Hpy188III TCNNGA 3 cut(s) 90, 233, 248
Hpy8I GTNNAC 3 cut(s) 202, 218, 312
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 160, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 46, 65
HpyF3I CTNAG 2 cut(s) 115, 180
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 1 cut(s) 251
KspI CCGCGG 1 cut(s) 60
Kzo9I GATC 2 cut(s) 22, 92
LmnI GCTCC 2 cut(s) 37, 111
LpnPI CCDG 6 cut(s) 56, 126, 226, 246, 282, 282
Lsp1109I GCAGC 2 cut(s) 24, 58
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 195
MalI GATC 2 cut(s) 24, 94
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 22, 92
MhlI GDGCHC 2 cut(s) 34, 220
MluCI AATT 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 195, 282
MnlI CCTC 7 cut(s) 21, 26, 88, 119, 255, 282, 285
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 37, 59
MspI CCGG 2 cut(s) 213, 269
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 43, 46, 65
NdeII GATC 2 cut(s) 22, 92
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 2 cut(s) 145, 280
NmeAIII GCCGAG 1 cut(s) 53
PagI TCATGA 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 240
PflFI GACNNNGTC 1 cut(s) 298
PkrI GCNGC 3 cut(s) 39, 48, 51
Ple19I CGATCG 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 2 cut(s) 143, 279
Psp124BI GAGCTC 1 cut(s) 34
Psp5II RGGWCCY 2 cut(s) 143, 279
PspFI CCCAGC 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 145, 280
PspPI GGNCC 2 cut(s) 143, 279
PspPPI RGGWCCY 2 cut(s) 143, 279
PsyI GACNNNGTC 1 cut(s) 298
PvuI CGATCG 1 cut(s) 25
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SacI GAGCTC 1 cut(s) 34
SacII CCGCGG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 3 cut(s) 38, 47, 50
Sau3AI GATC 2 cut(s) 22, 92
Sau96I GGNCC 2 cut(s) 143, 279
ScaI AGTACT 1 cut(s) 319
SduI GDGCHC 2 cut(s) 34, 220
SetI ASST 6 cut(s) 18, 34, 108, 145, 198, 311
Sfr303I CCGCGG 1 cut(s) 60
SgrBI CCGCGG 1 cut(s) 60
SinI GGWCC 2 cut(s) 143, 279
SnaBI TACGTA 1 cut(s) 196
Sse9I AATT 1 cut(s) 251
SsiI CCGC 5 cut(s) 35, 50, 57, 59, 112
SspMI CTAG 1 cut(s) 90
SstI GAGCTC 1 cut(s) 34
StyI CCWWGG 1 cut(s) 282
TaiI ACGT 1 cut(s) 198
TasI AATT 1 cut(s) 251
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseI GCWGC 2 cut(s) 37, 46
TspDTI ATGAA 1 cut(s) 264
Tth111I GACNNNGTC 1 cut(s) 298
VneI GTGCAC 1 cut(s) 216
VpaK11BI GGWCC 2 cut(s) 143, 279
XagI CCTNNNNNAGG 1 cut(s) 286
XapI RAATTY 1 cut(s) 251
XbaI TCTAGA 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.