Prupe.5G116000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012437
Physical Location & Seq
Forward (+)
11832309 .. 11834000
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G116000.1

Sequence Viewer

Length: 813 bp
ATGGAGGTCGGTGCTTATACCTCAAGCGGCAAAGAGCACTTATCCTCAAATCCGCGCAGACGCTCACAGCAAGAGTTCGACTCTCATCCTGCCATTCCAATGAACCAAAAGAAATCACAAGAACACAAGGCACATCAATATAAAGTGATGAAAGTCGGAGAAGCTTATAACGCAAGTGGCAAATATCACCTGTTACCCTCAAACCCTCGTCGTCGTTCACTGCAAGAGTTCGACTCCCGTCCAACCCCGAATCAAAAGAAAGATCAACAACACGATGAAAATCAATCTAAAGCCTTGGTTCTCAACAAGTCCAGGCCGGTGTGGGATTGTGGCAGCTCACTCTACGACTCGGTAGAGCTCGACTCGTTCAAGCGCCAAATCGACTCGGCCATATCATGCAGAACCATGTCAATGCCTCATCTGTCTGATCGCCGAGTTCTTCCCCCTGCTCCTCCTCCTTCACGGCCAGCCATAACAGCCTCCAACAAAAAACCCTCGTCAAACAAGCTCTCTCGCTCGATTCAGAAGCTTCTGAGGTCCGTGTTCAAGCCAAATAAATCAAGCAACAGCAACAACAAGAACAACAATTCTGGTGTCGTTTTTAGAGTACCAGATCATCCGCAGGCCAACATCAAGGACGGGTTTTTTGTTGTGTACGACAAGACAGGTGCACTTACGACAATTCCTGAGGTGGCTCCTCATGAGTTTAATTTCGGTGGTCTCTCCCCGGAGATTGGGGCGTTGGTCGGGAAGACAACCTCGGAGCGATTTACAGCTACTAGTACTTCTAATATTGGTATTTCATGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

29.97

Weight (kDa)

9.83

Isoelectric Point (pI)

70.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41810 AT5G41810
fragaria_vesca FvH4_5g04150
malus_domestica MD06G1103200.v1.1 MD14G1122100.v1.1
prunus_persica Prupe.5G116000_v2.0.a1
pyrus_communis pycom06g09780
rosa_chinensis RchiOBHm_Chr7g0195351
rosa_laevigata RLG00000004128
rosa_multiflora Rmu_co8178312.1_g000001 Rmu_sc0005377.1_g000004 Rmu_sc0007366.1_g000003
rosa_roxburghii Rroxscaffold_3G00260560
rosa_rugosa Rorug07G0022700
rosa_samantha Rh7AG149900 Rh7BG151300 Rh7CG155100 Rh7DG151000
rosa_wichuraiana Rw7G012790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccII CGCG 1 cut(s) 55
AciI CCGC 3 cut(s) 27, 53, 620
AcoI YGGCCR 2 cut(s) 387, 464
AfaI GTAC 3 cut(s) 609, 656, 784
AfiI CCNNNNNNNGG 1 cut(s) 734
AgsI TTSAA 2 cut(s) 370, 547
AhlI ACTAGT 1 cut(s) 779
AjnI CCWGG 1 cut(s) 311
AluBI AGCT 6 cut(s) 164, 336, 358, 508, 529, 776
AluI AGCT 6 cut(s) 164, 336, 358, 508, 529, 776
Alw21I GWGCWC 3 cut(s) 39, 360, 673
Alw26I GTCTC 1 cut(s) 725
Alw44I GTGCAC 1 cut(s) 669
AoxI GGCC 4 cut(s) 314, 387, 464, 624
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 1 cut(s) 333
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AspLEI GCGC 2 cut(s) 57, 375
AspS9I GGNCC 1 cut(s) 537
AsuC2I CCSGG 1 cut(s) 728
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 537
AxyI CCTNAGG 1 cut(s) 687
BaeGI GKGCMC 1 cut(s) 673
BanII GRGCYC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 758
Bbv12I GWGCWC 3 cut(s) 39, 360, 673
BbvI GCAGC 1 cut(s) 345
BceAI ACGGC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 313
BcnI CCSGG 1 cut(s) 728
BcoDI GTCTC 1 cut(s) 725
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 1 cut(s) 780
BfoI RGCGCY 1 cut(s) 376
BisI GCNGC 2 cut(s) 28, 334
BlsI GCNGC 2 cut(s) 29, 335
BmcAI AGTACT 1 cut(s) 784
Bme1390I CCNGG 2 cut(s) 313, 728
Bme18I GGWCC 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 537
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 2 cut(s) 313, 728
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 758
BplI GAGNNNNNCTC 6 cut(s) 65, 97, 218, 250, 347, 379
BpuEI CTTGAG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 725
BsaJI CCNNGG 3 cut(s) 294, 726, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 734
Bse118I RCCGGY 1 cut(s) 316
Bse21I CCTNAGG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 3 cut(s) 294, 726, 759
BseGI GGATG 2 cut(s) 85, 616
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 734
BseMII CTCAG 2 cut(s) 524, 678
BseRI GAGGAG 3 cut(s) 441, 444, 687
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 4 cut(s) 316, 389, 466, 626
BsiHKAI GWGCWC 3 cut(s) 39, 360, 673
BsiSI CCGG 2 cut(s) 317, 728
BslI CCNNNNNNNGG 1 cut(s) 734
BsmAI GTCTC 1 cut(s) 725
BsnI GGCC 4 cut(s) 316, 389, 466, 626
Bso31I GGTCTC 1 cut(s) 725
Bsp1286I GDGCHC 3 cut(s) 39, 360, 673
Bsp143I GATC 3 cut(s) 262, 427, 613
BspACI CCGC 3 cut(s) 27, 53, 620
BspANI GGCC 4 cut(s) 316, 389, 466, 626
BspCNI CTCAG 2 cut(s) 525, 679
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 1 cut(s) 696
BspTNI GGTCTC 1 cut(s) 725
BsrFI RCCGGY 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 294, 726, 759
BssMI GATC 3 cut(s) 262, 427, 613
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 468, 624
BstDEI CTNAG 2 cut(s) 533, 687
BstF5I GGATG 2 cut(s) 85, 616
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 2 cut(s) 57, 375
BstKTI GATC 3 cut(s) 265, 430, 616
BstMAI GTCTC 1 cut(s) 725
BstMBI GATC 3 cut(s) 262, 427, 613
BstMWI GCNNNNNNNGC 2 cut(s) 170, 476
BstNI CCWGG 1 cut(s) 313
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 311, 726
BstSLI GKGCMC 1 cut(s) 673
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 758
Bsu36I CCTNAGG 1 cut(s) 687
BsuRI GGCC 4 cut(s) 316, 389, 466, 626
BtsCI GGATG 2 cut(s) 85, 616
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 468, 624
CciI TCATGA 1 cut(s) 700
CfoI GCGC 2 cut(s) 57, 375
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 537
CseI GACGC 1 cut(s) 69
Csp6I GTAC 3 cut(s) 608, 655, 783
CviAII CATG 4 cut(s) 396, 406, 701, 804
CviQI GTAC 3 cut(s) 608, 655, 783
DdeI CTNAG 2 cut(s) 533, 687
DpnI GATC 3 cut(s) 264, 429, 615
DpnII GATC 3 cut(s) 262, 427, 613
EaeI YGGCCR 2 cut(s) 387, 464
Ecl136II GAGCTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 725
Eco47I GGWCC 1 cut(s) 537
Eco53kI GAGCTC 1 cut(s) 358
Eco81I CCTNAGG 1 cut(s) 687
EcoICRI GAGCTC 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 4 cut(s) 399, 409, 704, 807
FaiI YATR 9 cut(s) 18, 141, 168, 392, 397, 407, 473, 702, 805
FatI CATG 4 cut(s) 395, 405, 700, 803
Fnu4HI GCNGC 2 cut(s) 28, 334
FokI GGATG 2 cut(s) 72, 603
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 28, 334
FspBI CTAG 1 cut(s) 780
GlaI GCGC 2 cut(s) 56, 374
GluI GCNGC 2 cut(s) 28, 334
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 4 cut(s) 316, 389, 466, 626
HapII CCGG 2 cut(s) 317, 728
HgaI GACGC 1 cut(s) 69
HhaI GCGC 2 cut(s) 57, 375
Hin1II CATG 4 cut(s) 399, 409, 704, 807
Hin6I GCGC 2 cut(s) 55, 373
HinP1I GCGC 2 cut(s) 55, 373
HindIII AAGCTT 2 cut(s) 162, 527
HinfI GANTC 7 cut(s) 80, 233, 250, 347, 362, 383, 520
HpaII CCGG 2 cut(s) 317, 728
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 3 cut(s) 218, 655, 671
Hpy188I TCNGA 5 cut(s) 158, 427, 525, 534, 763
Hpy188III TCNNGA 3 cut(s) 686, 701, 748
Hpy8I GTNNAC 3 cut(s) 218, 655, 671
Hpy99I CGWCG 2 cut(s) 213, 216
HpyAV CCTTC 1 cut(s) 468
HpyCH4V TGCA 3 cut(s) 223, 399, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 476
HpyF3I CTNAG 2 cut(s) 533, 687
Hsp92II CATG 4 cut(s) 399, 409, 704, 807
HspAI GCGC 2 cut(s) 55, 373
Kzo9I GATC 3 cut(s) 262, 427, 613
LmnI GCTCC 3 cut(s) 454, 700, 763
Lsp1109I GCAGC 1 cut(s) 345
MaeI CTAG 1 cut(s) 780
MaeIII GTNAC 1 cut(s) 192
MalI GATC 3 cut(s) 264, 429, 615
MboI GATC 3 cut(s) 262, 427, 613
MboII GAAGA 2 cut(s) 431, 763
MhlI GDGCHC 3 cut(s) 39, 360, 673
MluCI AATT 3 cut(s) 586, 681, 709
MlyI GAGTC 5 cut(s) 74, 227, 341, 356, 377
MmeI TCCRAC 3 cut(s) 136, 266, 507
MseI TTAA 2 cut(s) 708, 811
MslI CAYNNNNRTG 2 cut(s) 98, 410
MspI CCGG 2 cut(s) 317, 728
MspR9I CCNGG 2 cut(s) 313, 728
MvaI CCWGG 1 cut(s) 313
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 170, 476
NciI CCSGG 1 cut(s) 728
NdeII GATC 3 cut(s) 262, 427, 613
NlaIII CATG 4 cut(s) 399, 409, 704, 807
NlaIV GGNNCC 1 cut(s) 696
NmeAIII GCCGAG 2 cut(s) 365, 458
PagI TCATGA 1 cut(s) 700
PfeI GAWTC 2 cut(s) 250, 520
PkrI GCNGC 2 cut(s) 29, 335
PleI GAGTC 5 cut(s) 74, 227, 341, 356, 377
PpsI GAGTC 5 cut(s) 74, 227, 341, 356, 377
PshAI GACNNNNGTC 1 cut(s) 237
PsiI TTATAA 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 1 cut(s) 537
RsaI GTAC 3 cut(s) 609, 656, 784
RsaNI GTAC 3 cut(s) 608, 655, 783
RseI CAYNNNNRTG 2 cut(s) 98, 410
SacI GAGCTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 708, 811
SatI GCNGC 2 cut(s) 28, 334
Sau3AI GATC 3 cut(s) 262, 427, 613
Sau96I GGNCC 1 cut(s) 537
ScaI AGTACT 1 cut(s) 784
SchI GAGTC 5 cut(s) 74, 227, 341, 356, 377
ScrFI CCNGG 2 cut(s) 313, 728
SduI GDGCHC 3 cut(s) 39, 360, 673
SinI GGWCC 1 cut(s) 537
SmiMI CAYNNNNRTG 2 cut(s) 98, 410
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SpeI ACTAGT 1 cut(s) 779
Sse9I AATT 3 cut(s) 586, 681, 709
SsiI CCGC 3 cut(s) 27, 53, 620
SspI AATATT 1 cut(s) 793
SspMI CTAG 1 cut(s) 780
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 2 cut(s) 311, 726
StyI CCWWGG 1 cut(s) 294
TaqI TCGA 5 cut(s) 78, 231, 360, 381, 518
TasI AATT 3 cut(s) 586, 681, 709
TatI WGTACW 1 cut(s) 782
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 2 cut(s) 250, 520
Tru1I TTAA 2 cut(s) 708, 811
Tru9I TTAA 2 cut(s) 708, 811
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 333
TspDTI ATGAA 4 cut(s) 116, 164, 291, 792
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 1 cut(s) 225
VneI GTGCAC 1 cut(s) 669
VpaK11BI GGWCC 1 cut(s) 537
XspI CTAG 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.