AT5G42080
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005955
Physical Location & Seq
Reverse (-)
16820284 .. 16825016
4733 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42080.3

Sequence Viewer

Length: 1833 bp
ATGGAAAATCTGATCTCTCTGGTTAACAAGATACAGAGAGCTTGCACGGCTTTAGGAGACCATGGAGACTCCAGCGCTTTACCTACTCTTTGGGATTCCTTGCCTGCGATCGCCGTCGTTGGTGGTCAGAGCTCAGGGAAGTCTTCAGTCCTGGAGAGCATCGTGGGAAAGGACTTTTTACCCCGTGGATCTGGCATTGTTACTCGAAGGCCCCTTGTCTTACAGTTGCAAAAGATCGATGATGGAACCCGGGAGTATGCAGAGTTTCTTCACCTCCCGAGGAAAAAGTTTACTGATTTTGCTGCTGTGAGGAAGGAGATTCAAGATGAGACTGACAGAGAGACTGGACGCAGCAAGGCTATTTCTAGTGTTCCCATTCACCTTAGCATATACTCTCCCAATGTTGTCAACTTGACACTGATAGATCTTCCAGGGCTTACAAAAGTTGCTGTTGATGGACAATCTGATAGTATAGTGAAGGACATTGAAAACATGGTTCGGTCCTACATTGAAAAGCCCAACTGCATCATTTTGGCAATCTCACCTGCAAACCAAGATCTTGCTACCTCAGATGCAATTAAAATTTCCCGTGAGGTTGATCCATCGGGGGACAGAACATTTGGTGTCTTGACAAAGATTGATCTTATGGACAAGGGGACGGATGCAGTGGAAATTCTGGAAGGGAGATCTTTTAAACTTAAATATCCGTGGGTTGGTGTCGTCAACCGTTCCCAAGCAGATATTAACAAGAATGTCGACATGATTGCGGCTCGGAAAAGAGAGAGGGAGTACTTTTCCAATACTACTGAGTATAGGCACCTTGCTAATAAAATGGGTTCCGAGCATTTGGCAAAGATGCTCTCCAAGCATCTAGAACGTGTGATCAAGTCGAGAATTCCTGGCATTCAGTCACTTATTAACAAAACAGTATTAGAGCTGGAAACTGAACTAAGTCGCCTTGGAAAGCCTATTGCAGCTGATGCAGGGGGGAAGTTGTACTCAATAATGGAGATATGTCGGCTTTTTGATCAAATATTCAAAGAGCATCTTGATGGAGTGCGTGCTGGTGGTGAAAAAGTGTACAACGTGTTTGATAACCAGCTTCCTGCGGCTCTGAAGAGACTCCAATTTGACAAGCAGCTAGCGATGGACAACATCCGGAAGCTGGTCACTGAGGCTGATGGTTACCAGCCTCACTTGATTGCTCCTGAGCAAGGTTACCGTCGTCTCATTGAGTCTTCTATTGTCTCCATCAGAGGCCCTGCTGAAGCATCTGTTGACACCGTTCATGCTATCTTAAAGGATCTGGTTCACAAGTCTGTGAATGAAACTGTGGAACTAAAACAATACCCAGCTCTGAGAGTGGAGGTGACAAATGCGGCGATAGAGTCGCTGGATAAAATGCGGGAAGGAAGTAAGAAAGCAACACTGCAGCTGGTTGACATGGAGTGCAGTTACCTCACTGTTGATTTCTTCAGGAAACTTCCCCAGGATGTTGAGAAGGGTGGTAACCCCACACACTCCATTTTCGACCGCTACAACGATTCCTATCTCAGACGAATCGGATCCAATGTTTTGTCTTACGTGAACATGGTCTGTGCTGGCCTGCGGAATTCAATCCCCAAGTCCATCGTATACTGCCAAGTCCGAGAAGCGAAGCGCAGTCTCCTCGACCATTTCTTTGCGGAGCTCGGTACCATGGATATGAAGAGGCTCTCGTCGCTATTGAACGAAGATCCAGCAATCATGGAGAGACGCAGTGCCATCTCAAAGCGGCTAGAATTGTATCGAGCAGCCCAATCCGAGATCGATGCTGTTGCTTGGTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

610

Amino Acids

68.17

Weight (kDa)

8.47

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 37 - 213 1.2e-55 Dynamin family
Dynamin_M PF01031 221 - 483 3.8e-61 Dynamin central region
GED PF02212 508 - 600 4.8e-22 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 553
Acc36I ACCTGC 1 cut(s) 553
Acc65I GGTACC 1 cut(s) 1694
AccB1I GGYRCC 2 cut(s) 816, 1694
AccI GTMKAC 2 cut(s) 756, 1635
AccIII TCCGGA 1 cut(s) 1158
AciI CCGC 8 cut(s) 767, 1109, 1379, 1405, 1534, 1609, 1685, 1774
AclWI GGATC 6 cut(s) 196, 593, 1311, 1560, 1573, 1730
AcsI RAATTY 4 cut(s) 582, 672, 894, 1612
AcuI CTGAAG 4 cut(s) 129, 1136, 1287, 1459
AfaI GTAC 4 cut(s) 791, 998, 1082, 1696
AfeI AGCGCT 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 713, 1165, 1214
AflIII ACRYGT 2 cut(s) 877, 1086
AgsI TTSAA 6 cut(s) 323, 488, 512, 1039, 1617, 1729
AjnI CCWGG 4 cut(s) 150, 430, 898, 1488
Alw21I GWGCWC 2 cut(s) 134, 1692
Alw26I GTCTC 9 cut(s) 51, 60, 323, 335, 1114, 1232, 1252, 1670, 1747
AlwI GGATC 6 cut(s) 196, 593, 1311, 1560, 1573, 1730
Ama87I CYCGRG 2 cut(s) 249, 277
Aor13HI TCCGGA 1 cut(s) 1158
Aor51HI AGCGCT 1 cut(s) 76
AoxI GGCC 3 cut(s) 209, 1258, 1603
ApeKI GCWGC 6 cut(s) 302, 351, 974, 1138, 1432, 1793
ApoI RAATTY 4 cut(s) 582, 672, 894, 1612
ArsI GACNNNNNNTTYG 4 cut(s) 602, 634, 1664, 1696
AsiSI GCGATCGC 1 cut(s) 111
Asp718I GGTACC 1 cut(s) 1694
AspLEI GCGC 2 cut(s) 77, 1662
AspS9I GGNCC 4 cut(s) 210, 501, 1259, 1824
AsuC2I CCSGG 2 cut(s) 250, 251
AsuHPI GGTGA 5 cut(s) 263, 371, 534, 1082, 1381
AsuNHI GCTAGC 1 cut(s) 1141
AvaI CYCGRG 2 cut(s) 249, 277
AvaII GGWCC 2 cut(s) 501, 1824
BamHI GGATCC 1 cut(s) 1565
BanI GGYRCC 2 cut(s) 816, 1694
BanII GRGCYC 2 cut(s) 134, 1692
BbsI GAAGAC 2 cut(s) 135, 1230
Bbv12I GWGCWC 2 cut(s) 134, 1692
BbvI GCAGC 6 cut(s) 289, 363, 986, 1150, 1444, 1805
BccI CCATC 9 cut(s) 236, 449, 610, 1046, 1141, 1175, 1259, 1637, 1772
BceAI ACGGC 2 cut(s) 63, 98
BcgI CGANNNNNNTGC 8 cut(s) 746, 780, 1651, 1685, 1793, 1799, 1827, 1833
BciT130I CCWGG 4 cut(s) 152, 432, 900, 1490
BclI TGATCA 2 cut(s) 882, 1027
BcnI CCSGG 2 cut(s) 250, 251
BcoDI GTCTC 9 cut(s) 51, 60, 323, 335, 1114, 1232, 1252, 1670, 1747
BfaI CTAG 4 cut(s) 366, 872, 1142, 1778
BfmI CTRYAG 1 cut(s) 1430
BfoI RGCGCY 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 553
BglII AGATCT 3 cut(s) 424, 556, 686
BmcAI AGTACT 1 cut(s) 791
Bme1390I CCNGG 6 cut(s) 152, 250, 251, 432, 900, 1490
Bme18I GGWCC 2 cut(s) 501, 1824
BmeT110I CYCGRG 2 cut(s) 249, 277
BmgT120I GGNCC 4 cut(s) 210, 501, 1259, 1824
BmiI GGNNCC 6 cut(s) 212, 247, 818, 838, 1567, 1696
BmrFI CCNGG 6 cut(s) 152, 250, 251, 432, 900, 1490
BmtI GCTAGC 1 cut(s) 1145
BpiI GAAGAC 2 cut(s) 135, 1230
BpmI CTGGAG 2 cut(s) 55, 173
Bpu10I CCTNAGC 3 cut(s) 133, 383, 1209
BpuMI CCSGG 2 cut(s) 250, 251
Bsa29I ATCGAT 2 cut(s) 237, 1809
BsaAI YACGTR 1 cut(s) 1585
BsaBI GATNNNNATC 1 cut(s) 1548
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 9 cut(s) 61, 184, 249, 278, 431, 707, 958, 1488, 1698
BsaWI WCCGGW 1 cut(s) 1158
Bsc4I CCNNNNNNNGG 3 cut(s) 713, 1165, 1214
Bse1I ACTGG 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 1548
BseAI TCCGGA 1 cut(s) 1158
BseBI CCWGG 4 cut(s) 152, 432, 900, 1490
BseCI ATCGAT 2 cut(s) 237, 1809
BseDI CCNNGG 9 cut(s) 61, 184, 249, 278, 431, 707, 958, 1488, 1698
BseGI GGATG 3 cut(s) 667, 1155, 1498
BseJI GATNNNNATC 1 cut(s) 1548
BseLI CCNNNNNNNGG 3 cut(s) 713, 1165, 1214
BseMII CTCAG 7 cut(s) 147, 582, 798, 1164, 1200, 1349, 1567
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 1658
BseXI GCAGC 6 cut(s) 289, 363, 986, 1150, 1444, 1805
BseYI CCCAGC 1 cut(s) 1351
BsgI GTGCAG 1 cut(s) 1471
Bsh1285I CGRYCG 2 cut(s) 111, 1534
BshFI GGCC 3 cut(s) 211, 1260, 1605
BshNI GGYRCC 2 cut(s) 816, 1694
BshVI ATCGAT 2 cut(s) 237, 1809
BsiEI CGRYCG 2 cut(s) 111, 1534
BsiHKAI GWGCWC 2 cut(s) 134, 1692
BsiHKCI CYCGRG 2 cut(s) 249, 277
BsiSI CCGG 2 cut(s) 250, 1159
BslFI GGGAC 2 cut(s) 623, 670
BslI CCNNNNNNNGG 3 cut(s) 713, 1165, 1214
BsmAI GTCTC 9 cut(s) 51, 60, 323, 335, 1114, 1232, 1252, 1670, 1747
BsmBI CGTCTC 2 cut(s) 1232, 1747
BsmFI GGGAC 2 cut(s) 623, 670
BsmI GAATGC 1 cut(s) 903
BsnI GGCC 3 cut(s) 211, 1260, 1605
Bso31I GGTCTC 1 cut(s) 51
BsoBI CYCGRG 2 cut(s) 249, 277
Bsp1286I GDGCHC 2 cut(s) 134, 1692
Bsp13I TCCGGA 1 cut(s) 1158
Bsp1407I TGTACA 1 cut(s) 1080
Bsp19I CCATGG 2 cut(s) 61, 1698
BspACI CCGC 8 cut(s) 767, 1109, 1379, 1405, 1534, 1609, 1685, 1774
BspANI GGCC 3 cut(s) 211, 1260, 1605
BspCNI CTCAG 7 cut(s) 146, 581, 799, 1165, 1201, 1350, 1566
BspDI ATCGAT 2 cut(s) 237, 1809
BspEI TCCGGA 1 cut(s) 1158
BspLI GGNNCC 6 cut(s) 212, 247, 818, 838, 1567, 1696
BspMAI CTGCAG 1 cut(s) 1434
BspMI ACCTGC 1 cut(s) 553
BspOI GCTAGC 1 cut(s) 1145
BspPI GGATC 6 cut(s) 196, 593, 1311, 1560, 1573, 1730
BspT107I GGYRCC 2 cut(s) 816, 1694
BspTNI GGTCTC 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 1080
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 9 cut(s) 61, 184, 249, 278, 431, 707, 958, 1488, 1698
BssNAI GTATAC 1 cut(s) 1636
BssT1I CCWWGG 3 cut(s) 61, 958, 1698
Bst1107I GTATAC 1 cut(s) 1636
Bst2UI CCWGG 4 cut(s) 152, 432, 900, 1490
Bst4CI ACNGT 7 cut(s) 225, 728, 928, 1223, 1285, 1333, 1465
Bst6I CTCTTC 2 cut(s) 1112, 1703
BstAPI GCANNNNNTGC 1 cut(s) 980
BstAUI TGTACA 1 cut(s) 1080
BstBAI YACGTR 1 cut(s) 1585
BstC8I GCNNGC 6 cut(s) 43, 105, 1062, 1143, 1603, 1607
BstDEI CTNAG 9 cut(s) 133, 383, 568, 807, 950, 1173, 1209, 1358, 1553
BstDSI CCRYGG 4 cut(s) 61, 184, 707, 1698
BstEII GGTNACC 3 cut(s) 1184, 1217, 1508
BstENI CCTNNNNNAGG 1 cut(s) 1212
BstF5I GGATG 3 cut(s) 667, 1155, 1498
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 1662
BstMAI GTCTC 9 cut(s) 51, 60, 323, 335, 1114, 1232, 1252, 1670, 1747
BstMCI CGRYCG 2 cut(s) 111, 1534
BstMWI GCNNNNNNNGC 4 cut(s) 47, 865, 980, 1720
BstNI CCWGG 4 cut(s) 152, 432, 900, 1490
BstPI GGTNACC 3 cut(s) 1184, 1217, 1508
BstSCI CCNGG 6 cut(s) 150, 248, 249, 430, 898, 1488
BstSFI CTRYAG 1 cut(s) 1430
BstV1I GCAGC 6 cut(s) 289, 363, 986, 1150, 1444, 1805
BstV2I GAAGAC 2 cut(s) 135, 1230
BstX2I RGATCY 7 cut(s) 188, 424, 556, 686, 1303, 1565, 1735
BstYI RGATCY 7 cut(s) 188, 424, 556, 686, 1303, 1565, 1735
BstZ17I GTATAC 1 cut(s) 1636
Bsu15I ATCGAT 2 cut(s) 237, 1809
BsuRI GGCC 3 cut(s) 211, 1260, 1605
BsuTUI ATCGAT 2 cut(s) 237, 1809
BtgI CCRYGG 4 cut(s) 61, 184, 707, 1698
BtgZI GCGATG 1 cut(s) 1160
BtsCI GGATG 3 cut(s) 667, 1155, 1498
BtsI GCAGTG 3 cut(s) 672, 1427, 1765
BtsIMutI CAGTG 6 cut(s) 416, 672, 1170, 1427, 1461, 1765
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 6 cut(s) 43, 105, 1062, 1143, 1603, 1607
CfoI GCGC 2 cut(s) 77, 1662
Cfr13I GGNCC 4 cut(s) 210, 501, 1259, 1824
Cfr9I CCCGGG 1 cut(s) 249
ClaI ATCGAT 2 cut(s) 237, 1809
CseI GACGC 2 cut(s) 357, 1764
Csp6I GTAC 4 cut(s) 790, 997, 1081, 1695
CviAII CATG 8 cut(s) 62, 493, 760, 1289, 1444, 1591, 1699, 1747
CviQI GTAC 4 cut(s) 790, 997, 1081, 1695
DdeI CTNAG 9 cut(s) 133, 383, 568, 807, 950, 1173, 1209, 1358, 1553
DraI TTTAAA 1 cut(s) 694
Eam1104I CTCTTC 2 cut(s) 1112, 1703
EarI CTCTTC 2 cut(s) 1112, 1703
Ecl136II GAGCTC 2 cut(s) 132, 1690
Eco130I CCWWGG 3 cut(s) 61, 958, 1698
Eco24I GRGCYC 2 cut(s) 134, 1692
Eco31I GGTCTC 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 501, 1824
Eco47III AGCGCT 1 cut(s) 76
Eco53kI GAGCTC 2 cut(s) 132, 1690
Eco57I CTGAAG 4 cut(s) 129, 1136, 1287, 1459
Eco88I CYCGRG 2 cut(s) 249, 277
Eco91I GGTNACC 3 cut(s) 1184, 1217, 1508
EcoICRI GAGCTC 2 cut(s) 132, 1690
EcoNI CCTNNNNNAGG 1 cut(s) 1212
EcoO109I RGGNCCY 2 cut(s) 210, 1259
EcoO65I GGTNACC 3 cut(s) 1184, 1217, 1508
EcoRI GAATTC 2 cut(s) 894, 1612
EcoRII CCWGG 4 cut(s) 150, 430, 898, 1488
EcoT14I CCWWGG 3 cut(s) 61, 958, 1698
EcoT38I GRGCYC 2 cut(s) 134, 1692
ErhI CCWWGG 3 cut(s) 61, 958, 1698
Esp3I CGTCTC 2 cut(s) 1232, 1747
FaeI CATG 8 cut(s) 65, 496, 763, 1292, 1447, 1594, 1702, 1750
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FaqI GGGAC 2 cut(s) 623, 670
FatI CATG 8 cut(s) 61, 492, 759, 1288, 1443, 1590, 1698, 1746
FauI CCCGC 1 cut(s) 1398
FbaI TGATCA 2 cut(s) 882, 1027
FblI GTMKAC 2 cut(s) 756, 1635
FokI GGATG 3 cut(s) 674, 1142, 1505
FriOI GRGCYC 2 cut(s) 134, 1692
FspBI CTAG 4 cut(s) 366, 872, 1142, 1778
GlaI GCGC 2 cut(s) 76, 1661
GsaI CCCAGC 1 cut(s) 1355
GsuI CTGGAG 2 cut(s) 55, 173
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 3 cut(s) 211, 1260, 1605
HapII CCGG 2 cut(s) 250, 1159
HgaI GACGC 2 cut(s) 357, 1764
HhaI GCGC 2 cut(s) 77, 1662
Hin1II CATG 8 cut(s) 65, 496, 763, 1292, 1447, 1594, 1702, 1750
Hin6I GCGC 2 cut(s) 75, 1660
HinP1I GCGC 2 cut(s) 75, 1660
HincII GTYRAC 6 cut(s) 25, 409, 724, 757, 1279, 1441
HindII GTYRAC 6 cut(s) 25, 409, 724, 757, 1279, 1441
HinfI GANTC 8 cut(s) 68, 95, 319, 1122, 1235, 1388, 1544, 1560
HpaI GTTAAC 1 cut(s) 25
HpaII CCGG 2 cut(s) 250, 1159
HphI GGTGA 5 cut(s) 263, 371, 534, 1082, 1381
Hpy99I CGWCG 3 cut(s) 119, 1227, 1723
HpyAV CCTTC 6 cut(s) 201, 307, 472, 674, 1403, 1495
HpyCH4III ACNGT 7 cut(s) 225, 728, 928, 1223, 1285, 1333, 1465
HpyCH4IV ACGT 3 cut(s) 877, 1086, 1584
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 865, 980, 1720
HpyF3I CTNAG 9 cut(s) 133, 383, 568, 807, 950, 1173, 1209, 1358, 1553
HpySE526I ACGT 3 cut(s) 877, 1086, 1584
Hsp92II CATG 8 cut(s) 65, 496, 763, 1292, 1447, 1594, 1702, 1750
HspAI GCGC 2 cut(s) 75, 1660
Kpn2I TCCGGA 1 cut(s) 1158
KpnI GGTACC 1 cut(s) 1698
Ksp22I TGATCA 2 cut(s) 882, 1027
KspAI GTTAAC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 1210, 1687
Lsp1109I GCAGC 6 cut(s) 289, 363, 986, 1150, 1444, 1805
MaeI CTAG 4 cut(s) 366, 872, 1142, 1778
MaeII ACGT 3 cut(s) 877, 1086, 1584
MaeIII GTNAC 8 cut(s) 199, 909, 1168, 1184, 1217, 1369, 1454, 1508
MboII GAAGA 8 cut(s) 135, 260, 419, 1129, 1230, 1465, 1720, 1745
MflI RGATCY 7 cut(s) 188, 424, 556, 686, 1303, 1565, 1735
MhlI GDGCHC 2 cut(s) 134, 1692
MluCI AATT 7 cut(s) 576, 582, 672, 894, 1127, 1612, 1781
MlyI GAGTC 4 cut(s) 62, 1116, 1244, 1397
MroI TCCGGA 1 cut(s) 1158
MseI TTAA 7 cut(s) 24, 579, 693, 699, 744, 918, 1298
MslI CAYNNNNRTG 2 cut(s) 1050, 1703
MspA1I CMGCKG 2 cut(s) 977, 1435
MspI CCGG 2 cut(s) 250, 1159
MspR9I CCNGG 6 cut(s) 152, 250, 251, 432, 900, 1490
Mva1269I GAATGC 1 cut(s) 903
MvaI CCWGG 4 cut(s) 152, 432, 900, 1490
MwoI GCNNNNNNNGC 4 cut(s) 47, 865, 980, 1720
NciI CCSGG 2 cut(s) 250, 251
NcoI CCATGG 2 cut(s) 61, 1698
NheI GCTAGC 1 cut(s) 1141
NlaIII CATG 8 cut(s) 65, 496, 763, 1292, 1447, 1594, 1702, 1750
NlaIV GGNNCC 6 cut(s) 212, 247, 818, 838, 1567, 1696
NmuCI GTSAC 3 cut(s) 909, 1168, 1369
PaqCI CACCTGC 1 cut(s) 553
PctI GAATGC 1 cut(s) 903
PfeI GAWTC 4 cut(s) 95, 319, 1544, 1560
PfoI TCCNGGA 1 cut(s) 150
Ple19I CGATCG 1 cut(s) 111
PleI GAGTC 4 cut(s) 62, 1116, 1243, 1396
PpsI GAGTC 4 cut(s) 62, 1116, 1243, 1396
Ppu21I YACGTR 1 cut(s) 1585
Psp124BI GAGCTC 2 cut(s) 134, 1692
Psp6I CCWGG 4 cut(s) 150, 430, 898, 1488
PspEI GGTNACC 3 cut(s) 1184, 1217, 1508
PspFI CCCAGC 1 cut(s) 1351
PspGI CCWGG 4 cut(s) 150, 430, 898, 1488
PspN4I GGNNCC 6 cut(s) 212, 247, 818, 838, 1567, 1696
PspPI GGNCC 4 cut(s) 210, 501, 1259, 1824
PstI CTGCAG 1 cut(s) 1434
PsuI RGATCY 7 cut(s) 188, 424, 556, 686, 1303, 1565, 1735
PvuI CGATCG 1 cut(s) 111
PvuII CAGCTG 2 cut(s) 977, 1435
RgaI GCGATCGC 1 cut(s) 111
RsaI GTAC 4 cut(s) 791, 998, 1082, 1696
RsaNI GTAC 4 cut(s) 790, 997, 1081, 1695
RseI CAYNNNNRTG 2 cut(s) 1050, 1703
SacI GAGCTC 2 cut(s) 134, 1692
SalI GTCGAC 1 cut(s) 755
SaqAI TTAA 7 cut(s) 24, 579, 693, 699, 744, 918, 1298
Sau96I GGNCC 4 cut(s) 210, 501, 1259, 1824
ScaI AGTACT 1 cut(s) 791
SchI GAGTC 4 cut(s) 62, 1116, 1244, 1397
ScrFI CCNGG 6 cut(s) 152, 250, 251, 432, 900, 1490
SduI GDGCHC 2 cut(s) 134, 1692
SfaAI GCGATCGC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 1430
SgfI GCGATCGC 1 cut(s) 111
SinI GGWCC 2 cut(s) 501, 1824
SmaI CCCGGG 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 1050, 1703
Sse9I AATT 7 cut(s) 576, 582, 672, 894, 1127, 1612, 1781
SsiI CCGC 8 cut(s) 767, 1109, 1379, 1405, 1534, 1609, 1685, 1774
SspI AATATT 1 cut(s) 1035
SspMI CTAG 4 cut(s) 366, 872, 1142, 1778
SstI GAGCTC 2 cut(s) 134, 1692
StyD4I CCNGG 6 cut(s) 150, 248, 249, 430, 898, 1488
StyI CCWWGG 3 cut(s) 61, 958, 1698
TaaI ACNGT 7 cut(s) 225, 728, 928, 1223, 1285, 1333, 1465
TaiI ACGT 3 cut(s) 880, 1089, 1587
TaqI TCGA 8 cut(s) 205, 237, 756, 890, 1530, 1671, 1789, 1809
TaqII GACCGA 1 cut(s) 489
TasI AATT 7 cut(s) 576, 582, 672, 894, 1127, 1612, 1781
TatI WGTACW 3 cut(s) 789, 996, 1080
TauI GCSGC 4 cut(s) 770, 1112, 1382, 1777
TfiI GAWTC 4 cut(s) 95, 319, 1544, 1560
Tru1I TTAA 7 cut(s) 24, 579, 693, 699, 744, 918, 1298
Tru9I TTAA 7 cut(s) 24, 579, 693, 699, 744, 918, 1298
TscAI CASTG 6 cut(s) 423, 672, 1177, 1434, 1468, 1765
TseFI GTSAC 3 cut(s) 909, 1168, 1369
TseI GCWGC 6 cut(s) 302, 351, 974, 1138, 1432, 1793
Tsp45I GTSAC 3 cut(s) 909, 1168, 1369
TspDTI ATGAA 3 cut(s) 1277, 1341, 1721
TspGWI ACGGA 2 cut(s) 674, 696
TspMI CCCGGG 1 cut(s) 249
TspRI CASTG 6 cut(s) 423, 672, 1177, 1434, 1468, 1765
VpaK11BI GGWCC 2 cut(s) 501, 1824
XagI CCTNNNNNAGG 1 cut(s) 1212
XapI RAATTY 4 cut(s) 582, 672, 894, 1612
XbaI TCTAGA 1 cut(s) 871
XmaI CCCGGG 1 cut(s) 249
XmiI GTMKAC 2 cut(s) 756, 1635
XspI CTAG 4 cut(s) 366, 872, 1142, 1778
ZrmI AGTACT 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.