Rh7BG144200
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005955
Physical Location & Seq
Reverse (-)
10672065 .. 10676032
3968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG144200.1

Sequence Viewer

Length: 1296 bp
ATGGAGAATCTGATCTCGCTAGTCAACAAAATCCAAAGAGCCTGCACGGCTCTCGGTGACCACGGCGAAGCCAGCGCATTACCGACTCTCTGGGACGCGCTCCCCTCCATCGCCGTCGTCGGTGGCCAGAGTTCAGGGAAGTCTTCTGTCTTGGAGAGCATTGTGGGGAAGGACTTCTTACCCCGTGGTTCTGGAATTGTTACTCGTCGTCCTCTTGTGTTGCAGCTTCATAAGATTGATGAAGGCAGCAGAGAATATGCGGAGTTTCTCCACCTTCCAAGGAAAAGGTTCACAGATTTTGCTGCCGTAAGAAAGGAAATTGCAGATGAGACAGATCGTGAAACTGGTCGCAGCAAAATGATCTCCAGCGTTCCAATTCATCTTAGCATATATTCTCCTAATGTTGTCAACTTGACACTTGTTGATCTTCCTGGGCTTACAAAAGTTGCTGTCGAGGGTCAGCCAGATAGTATTGTGCAGGACATTGAAAATATGGTTCGCTCCTATATTGAGAAGCCCAACAGTATAATTTTAGCAATTTCACCTGCTAATCAAGATCTTGCTACATCTGATGCAATTAAAATCTCTCGTGAAGTGGATCCAACAGGGGAGAGGACACTCGGAGTCTTGACAAAAATTGATCTTATGGACAAGGGTACTGATGCAGTTGAAATATTGGAAGGAAAGTCTTATCGCCTAAAATTTCCTTGGGTTGGGGTCGTGAATCGCTCTCAACAAGATATTAACAAGAATGTTGACATGATTGCTGCTCGGCGTAGAGAACGTGAATATTTTTCAGGTACCCCCGAATACAAGCACCTTGCTCACAGAATGGGTTCTGAGCATCTAGCGAAAATGCTTTCTAAGCATTTGGAAACTGTAATTAAGACAAAAATCCCAGGCATCCAGTCCCTTATTAACAAGACCATTGTTGAACTTGAAACTGAACTGAGTCGTCTTGGAAAGCCCATTGCTACTGATGCTGGAGGGAAACTGTATGCAATCATGGAGATTTGTCGTCTATTTGATGGAACATATAAAGAACATCTTGATGGCGTGCGTCCTGGAGGTGATAAGATTTACAATGTTTTTGATAACCAACTTCCTGCTGCTCTGAAAAGATTGCAATTTGATAAGCAACTTTCAATGGAAAATATAAGAAAGCTCATTACCGAAGCTGATGGGTATCAACCTCATCTAATAGCTCCCGAACAAGGATACCGTCGTCTCATAGAATCCTCGGTAATTAGTATAAGAGGTCCTGCTGAGGCTGCAGTTGATGCGGTAAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

431

Amino Acids

47.79

Weight (kDa)

7.75

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 37 - 213 3.3e-55 Dynamin family
Dynamin_M PF01031 221 - 430 6.6e-54 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 553
Acc36I ACCTGC 1 cut(s) 553
Acc65I GGTACC 1 cut(s) 800
AccB1I GGYRCC 1 cut(s) 800
AccII CGCG 1 cut(s) 98
AciI CCGC 2 cut(s) 260, 1283
AclWI GGATC 2 cut(s) 593, 606
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 701
AfaI GTAC 2 cut(s) 658, 802
AfiI CCNNNNNNNGG 2 cut(s) 713, 1214
AgsI TTSAA 5 cut(s) 488, 671, 935, 941, 1146
AjnI CCWGG 3 cut(s) 430, 898, 1063
AluBI AGCT 4 cut(s) 226, 1165, 1178, 1205
AluI AGCT 4 cut(s) 226, 1165, 1178, 1205
Alw26I GTCTC 2 cut(s) 323, 1232
AlwI GGATC 2 cut(s) 593, 606
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 7 cut(s) 223, 246, 302, 351, 767, 1109, 1271
ApoI RAATTY 1 cut(s) 701
Asp700I GAANNNNTTC 3 cut(s) 173, 287, 835
Asp718I GGTACC 1 cut(s) 800
AspLEI GCGC 2 cut(s) 77, 100
AspS9I GGNCC 1 cut(s) 1259
AsuHPI GGTGA 3 cut(s) 68, 534, 1082
AvaII GGWCC 1 cut(s) 1259
BaeI ACNNNNGTAYC 2 cut(s) 1210, 1243
BalI TGGCCA 1 cut(s) 126
BamHI GGATCC 1 cut(s) 598
BanI GGYRCC 1 cut(s) 800
BauI CACGAG 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 1266
BbvI GCAGC 7 cut(s) 235, 258, 289, 363, 754, 1096, 1258
BccI CCATC 4 cut(s) 116, 1022, 1046, 1175
BceAI ACGGC 4 cut(s) 63, 79, 98, 290
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 3 cut(s) 432, 900, 1065
BciVI GTATCC 1 cut(s) 1211
BcoDI GTCTC 2 cut(s) 323, 1232
BfaI CTAG 2 cut(s) 20, 848
BfmI CTRYAG 1 cut(s) 1272
BfuAI ACCTGC 1 cut(s) 553
BfuI GTATCC 1 cut(s) 1211
BglI GCCNNNNNGGC 1 cut(s) 47
BglII AGATCT 1 cut(s) 556
BisI GCNGC 7 cut(s) 224, 247, 303, 352, 768, 1110, 1272
BlsI GCNGC 7 cut(s) 225, 248, 304, 353, 769, 1111, 1273
Bme1390I CCNGG 3 cut(s) 432, 900, 1065
Bme18I GGWCC 1 cut(s) 1259
BmgT120I GGNCC 1 cut(s) 1259
BmiI GGNNCC 2 cut(s) 600, 802
BmrFI CCNGG 3 cut(s) 432, 900, 1065
BmsI GCATC 6 cut(s) 562, 652, 853, 912, 970, 1270
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 3 cut(s) 349, 1005, 1086
Bpu10I CCTNAGC 1 cut(s) 1266
BsaBI GATNNNNATC 1 cut(s) 1185
BsaJI CCNNGG 7 cut(s) 61, 184, 278, 431, 707, 898, 1239
Bsc4I CCNNNNNNNGG 2 cut(s) 713, 1214
Bse1I ACTGG 2 cut(s) 349, 907
Bse3DI GCAATG 1 cut(s) 969
Bse8I GATNNNNATC 1 cut(s) 1185
BseBI CCWGG 3 cut(s) 432, 900, 1065
BseDI CCNNGG 7 cut(s) 61, 184, 278, 431, 707, 898, 1239
BseGI GGATG 1 cut(s) 903
BseJI GATNNNNATC 1 cut(s) 1185
BseLI CCNNNNNNNGG 2 cut(s) 713, 1214
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 3 cut(s) 831, 941, 1257
BseNI ACTGG 2 cut(s) 349, 907
BseXI GCAGC 7 cut(s) 235, 258, 289, 363, 754, 1096, 1258
BsgI GTGCAG 2 cut(s) 28, 497
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 800
BslFI GGGAC 2 cut(s) 107, 895
BslI CCNNNNNNNGG 2 cut(s) 713, 1214
BsmAI GTCTC 2 cut(s) 323, 1232
BsmBI CGTCTC 1 cut(s) 1232
BsmFI GGGAC 2 cut(s) 107, 895
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 7 cut(s) 12, 334, 360, 424, 556, 598, 640
BspACI CCGC 2 cut(s) 260, 1283
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 3 cut(s) 832, 942, 1258
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 600, 802
BspMAI CTGCAG 1 cut(s) 1276
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 2 cut(s) 593, 606
BspT107I GGYRCC 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 969
BsrI ACTGG 2 cut(s) 349, 907
BssECI CCNNGG 7 cut(s) 61, 184, 278, 431, 707, 898, 1239
BssMI GATC 7 cut(s) 12, 334, 360, 424, 556, 598, 640
BssSI CACGAG 1 cut(s) 588
BssT1I CCWWGG 2 cut(s) 278, 707
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 3 cut(s) 432, 900, 1065
Bst4CI ACNGT 4 cut(s) 524, 880, 996, 1223
BstAPI GCANNNNNTGC 1 cut(s) 1280
BstC8I GCNNGC 3 cut(s) 43, 73, 1058
BstDEI CTNAG 5 cut(s) 383, 840, 864, 950, 1266
BstDSI CCRYGG 2 cut(s) 61, 184
BstEII GGTNACC 1 cut(s) 56
BstF5I GGATG 1 cut(s) 903
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 2 cut(s) 77, 100
BstKTI GATC 7 cut(s) 15, 337, 363, 427, 559, 601, 643
BstMAI GTCTC 2 cut(s) 323, 1232
BstMBI GATC 7 cut(s) 12, 334, 360, 424, 556, 598, 640
BstMWI GCNNNNNNNGC 6 cut(s) 47, 72, 865, 980, 1271, 1280
BstNI CCWGG 3 cut(s) 432, 900, 1065
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 3 cut(s) 430, 898, 1063
BstSFI CTRYAG 1 cut(s) 1272
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 7 cut(s) 235, 258, 289, 363, 754, 1096, 1258
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 556, 598
BstYI RGATCY 2 cut(s) 556, 598
BsuI GTATCC 1 cut(s) 1211
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 2 cut(s) 61, 184
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 903
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 3 cut(s) 43, 73, 1058
CfoI GCGC 2 cut(s) 77, 100
Cfr13I GGNCC 1 cut(s) 1259
CseI GACGC 2 cut(s) 104, 1049
Csp6I GTAC 2 cut(s) 657, 801
CviAII CATG 2 cut(s) 760, 1006
CviQI GTAC 2 cut(s) 657, 801
DdeI CTNAG 5 cut(s) 383, 840, 864, 950, 1266
DpnI GATC 7 cut(s) 14, 336, 362, 426, 558, 600, 642
DpnII GATC 7 cut(s) 12, 334, 360, 424, 556, 598, 640
EaeI YGGCCR 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 278, 707
Eco47I GGWCC 1 cut(s) 1259
Eco91I GGTNACC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 1259
EcoO65I GGTNACC 1 cut(s) 56
EcoRII CCWGG 3 cut(s) 430, 898, 1063
EcoT14I CCWWGG 2 cut(s) 278, 707
ErhI CCWWGG 2 cut(s) 278, 707
Esp3I CGTCTC 1 cut(s) 1232
FaeI CATG 2 cut(s) 763, 1009
FalI AAGNNNNNCTT 4 cut(s) 161, 193, 1032, 1064
FaqI GGGAC 2 cut(s) 107, 895
FatI CATG 2 cut(s) 759, 1005
Fnu4HI GCNGC 7 cut(s) 224, 247, 303, 352, 768, 1110, 1272
FokI GGATG 1 cut(s) 890
Fsp4HI GCNGC 7 cut(s) 224, 247, 303, 352, 768, 1110, 1272
FspBI CTAG 2 cut(s) 20, 848
GlaI GCGC 2 cut(s) 76, 99
GluI GCNGC 7 cut(s) 224, 247, 303, 352, 768, 1110, 1272
GsuI CTGGAG 3 cut(s) 349, 1005, 1086
HaeIII GGCC 1 cut(s) 126
HgaI GACGC 2 cut(s) 104, 1049
HhaI GCGC 2 cut(s) 77, 100
Hin1II CATG 2 cut(s) 763, 1009
Hin6I GCGC 2 cut(s) 75, 98
HinP1I GCGC 2 cut(s) 75, 98
HincII GTYRAC 3 cut(s) 25, 409, 757
HindII GTYRAC 3 cut(s) 25, 409, 757
HinfI GANTC 6 cut(s) 7, 85, 624, 724, 952, 1235
HphI GGTGA 3 cut(s) 68, 534, 1082
Hpy166II GTNNAC 4 cut(s) 25, 291, 409, 757
Hpy188I TCNGA 5 cut(s) 12, 571, 623, 841, 1116
Hpy188III TCNNGA 8 cut(s) 192, 338, 554, 590, 628, 721, 1049, 1208
Hpy8I GTNNAC 4 cut(s) 25, 291, 409, 757
Hpy99I CGWCG 4 cut(s) 119, 122, 210, 1227
HpyAV CCTTC 4 cut(s) 163, 236, 284, 674
HpyCH4III ACNGT 4 cut(s) 524, 880, 996, 1223
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 9 cut(s) 45, 223, 323, 478, 575, 665, 1001, 1126, 1274
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 72, 865, 980, 1271, 1280
HpyF3I CTNAG 5 cut(s) 383, 840, 864, 950, 1266
HpySE526I ACGT 1 cut(s) 784
Hsp92II CATG 2 cut(s) 763, 1009
HspAI GCGC 2 cut(s) 75, 98
KpnI GGTACC 1 cut(s) 804
Kzo9I GATC 7 cut(s) 12, 334, 360, 424, 556, 598, 640
LmnI GCTCC 3 cut(s) 105, 506, 1210
Lsp1109I GCAGC 7 cut(s) 235, 258, 289, 363, 754, 1096, 1258
LweI GCATC 6 cut(s) 562, 652, 853, 912, 970, 1270
MaeI CTAG 2 cut(s) 20, 848
MaeII ACGT 1 cut(s) 784
MaeIII GTNAC 2 cut(s) 56, 199
MalI GATC 7 cut(s) 14, 336, 362, 426, 558, 600, 642
MboI GATC 7 cut(s) 12, 334, 360, 424, 556, 598, 640
MboII GAAGA 2 cut(s) 135, 419
MflI RGATCY 2 cut(s) 556, 598
MlsI TGGCCA 1 cut(s) 126
MluNI TGGCCA 1 cut(s) 126
MlyI GAGTC 3 cut(s) 79, 633, 961
MmeI TCCRAC 1 cut(s) 626
Mox20I TGGCCA 1 cut(s) 126
MroXI GAANNNNTTC 3 cut(s) 173, 287, 835
MscI TGGCCA 1 cut(s) 126
MseI TTAA 4 cut(s) 579, 744, 885, 918
MslI CAYNNNNRTG 1 cut(s) 1050
Msp20I TGGCCA 1 cut(s) 126
MspR9I CCNGG 3 cut(s) 432, 900, 1065
MvaI CCWGG 3 cut(s) 432, 900, 1065
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 6 cut(s) 47, 72, 865, 980, 1271, 1280
NdeII GATC 7 cut(s) 12, 334, 360, 424, 556, 598, 640
NlaIII CATG 2 cut(s) 763, 1009
NlaIV GGNNCC 2 cut(s) 600, 802
NmeAIII GCCGAG 1 cut(s) 751
NmuCI GTSAC 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 553
PdmI GAANNNNTTC 3 cut(s) 173, 287, 835
PfeI GAWTC 3 cut(s) 7, 724, 1235
PfoI TCCNGGA 1 cut(s) 1063
PkrI GCNGC 7 cut(s) 225, 248, 304, 353, 769, 1111, 1273
PleI GAGTC 3 cut(s) 79, 632, 960
PpsI GAGTC 3 cut(s) 79, 632, 960
PpuMI RGGWCCY 1 cut(s) 1259
Psp5II RGGWCCY 1 cut(s) 1259
Psp6I CCWGG 3 cut(s) 430, 898, 1063
PspEI GGTNACC 1 cut(s) 56
PspGI CCWGG 3 cut(s) 430, 898, 1063
PspN4I GGNNCC 2 cut(s) 600, 802
PspPI GGNCC 1 cut(s) 1259
PspPPI RGGWCCY 1 cut(s) 1259
PstI CTGCAG 1 cut(s) 1276
PsuI RGATCY 2 cut(s) 556, 598
RsaI GTAC 2 cut(s) 658, 802
RsaNI GTAC 2 cut(s) 657, 801
RseI CAYNNNNRTG 1 cut(s) 1050
SaqAI TTAA 4 cut(s) 579, 744, 885, 918
SatI GCNGC 7 cut(s) 224, 247, 303, 352, 768, 1110, 1272
Sau3AI GATC 7 cut(s) 12, 334, 360, 424, 556, 598, 640
Sau96I GGNCC 1 cut(s) 1259
SchI GAGTC 3 cut(s) 79, 633, 961
ScrFI CCNGG 3 cut(s) 432, 900, 1065
SfaNI GCATC 6 cut(s) 562, 652, 853, 912, 970, 1270
SfcI CTRYAG 1 cut(s) 1272
SinI GGWCC 1 cut(s) 1259
SmiMI CAYNNNNRTG 1 cut(s) 1050
SsiI CCGC 2 cut(s) 260, 1283
SspI AATATT 2 cut(s) 675, 791
SspMI CTAG 2 cut(s) 20, 848
StyD4I CCNGG 3 cut(s) 430, 898, 1063
StyI CCWWGG 2 cut(s) 278, 707
TaaI ACNGT 4 cut(s) 524, 880, 996, 1223
TaiI ACGT 1 cut(s) 787
TaqI TCGA 1 cut(s) 453
TfiI GAWTC 3 cut(s) 7, 724, 1235
Tru1I TTAA 4 cut(s) 579, 744, 885, 918
Tru9I TTAA 4 cut(s) 579, 744, 885, 918
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 7 cut(s) 223, 246, 302, 351, 767, 1109, 1271
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 218, 255, 368
VpaK11BI GGWCC 1 cut(s) 1259
XapI RAATTY 1 cut(s) 701
XmnI GAANNNNTTC 3 cut(s) 173, 287, 835
XspI CTAG 2 cut(s) 20, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.