Rorug07G0016400
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005955
Physical Location & Seq
Forward (+)
1311172 .. 1314582
3411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0016400.1

Sequence Viewer

Length: 1830 bp
ATGCCCCAACTCGCCGAGGCCTACGCCTGCGTGCCGTCGACGGAGCGCGGCCGGGGGATCCTGATCTCCGGCGATCCCAAATCCAACCGGCTCCTCTACACCAATGGCAGATCCGTGATCATCATGAACCTCGACAACCCTCTCGACGTCGCCGTCTACGCGGAGCACGCCTACCCGGCCACCGTCGCCAGATTCTCCCCCAACGGCGAGTGGATCGCGTCCGCCGACGTCTCCGGCACCGTCAGGATCTGGGGGACCCACAACGATTTCGTCCTCAAGAACGAGTTCAAGGTCCTCTCGGGTCGGATCGACGACCTCCAGTGGTCCGCCGACGGAATGAGGATCGTCGCCTGCGGCGAAGGCAAAGGGAAGTCGCTTGTCCGCGCCTTCATGTGGGATTCTGGGTCTACTGTGGGGGATTTCGATGGGCATTCGAAACGGGTTTTGAGCTGTTGTTTCAAGCCAACCAGACCCTTTCGCATTGTCACATGCGGTGAGGATTTCCTGGTCAATTTCTATGAAGGGCCTCCTTTCAAATTCAAGCAGTCTCACAGGGATCACTCGAATTTTGTGAACTGTGTAAGGTACTCTCCAGATGGGAGTAAGTTTATCACTGTAAGCTCAGATAAGAAGGGTCTTATGTTTGATGGGAAGACTGCGGAGAAGATCGGAGAGCTTTCATCCGAAGATGGCCACAAAGGCAGCATTTATGCTCTTAGCTGGAGTCCTGATGGCAAACAGATTCTGACTGTGTCCGCTGACAAGTCGGCGAAAGTATGGGATATATGTGAGGATGGTAATGGGAAGGTGAATAAAACATTGACATGTCCTGGATCAGGTGGAGTGGATGACATGCTTGTTGGCGGCCTATGGCAGAATGATCATATAGTTACTGTTTCACTTGGAGGCATGATCAGTATATTCTCAGCAAGTGACCTTGATAAAGCCCCAATATCGCTATTTGGACACATGAAGAATATTACTTCATTGGCTGTCCTAAAGAATGACCCAAAACTTATATTGTCTACCAGCTATGATGGTCTAATTGTTAAGTGGGTTCAAGGCGTTGGATATAGTGGAAAATTACAAAGGAAGGAGACTTCTCAAATAAAATGTTTTGCAGCTGTTGAAGAAGAAATTGTTTCATCTGGATTTGACAATACGGTGTGGAGAGTTCCATTACAGGGTGATCAATGTGGAGATGCAGAATCTGTTGATGTTGGTAGTCAGCCGAAGGACATAAGCCATGCCCTTCAGTCTCCTGAACTTGTTTTGGTTTCAATTGATTCAGGAGCTGTCTTGCTTCGTGGCAGCAAAGTAGTGTCAACTATTAACCTTGGGTTTACTGTCACAGCATCTGCTATTGCACCAGATGGTAGTGAAGCTATCATTGGTGGGCAGGATGGCAAACTGCATATATATTCTATAGCAGGTGATACACTTACGGAAGAGGCTGTACTAGAGAAACATCGGGGTGCTATCAGTGTCATACGTTACTCTCCAGATGTTTCAATGATTGCATCAGGAGATTTGAACCGAGAAGCTGTCATCTGGGATCGTGCCTCCCGAGAGGTCAAGCTTAAGAATATGTTGTACCATACTGCTCGAATAAACTGCCTTGCTTGGTCTCCCGATAACAGCATGGTTGCTACTGGATCACTTGACACATGTGTCATTATATATGAAGTTGACAAGCCTGCATCCAGCCGTGTAACCATCAAGGGTGCTCATTTGGGCGGGGTGTATGGGATAGCTTTCACCGATGAGCACACAGTCGTAAGCTCTGGCGAGGATGCCTTTGTTCGTGTGTGGAGGTTGACTCCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

609

Amino Acids

65.88

Weight (kDa)

5.83

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 30 - 202 1.1e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 37 - 211 8.9e-13 WDR3 first beta-propeller domain
Beta-prop_EML PF23409 53 - 261 2.7e-14 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5 PF25175 55 - 273 5.9e-29 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 65 - 353 8.6e-11 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 102 - 174 6.3e-06 THOC3 beta-propeller domain
WD40_Gbeta PF25391 102 - 265 9.1e-10 G protein beta WD-40 repeat protein
WD40_WDHD1_1st PF24817 105 - 262 7.5e-09 WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd PF24782 106 - 352 9.9e-09 MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 113 - 263 1.2e-06 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 129 - 264 1.2e-14 Prp19 WD40 domain
WDR55 PF24796 148 - 391 5.8e-13 WDR55
Beta-prop_EML_2 PF23414 148 - 262 1.6e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 184 - 262 4.2e-09 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 187 - 264 5.9e-12 THOC3 beta-propeller domain
EIF3I PF24805 187 - 264 5.3e-08 EIF3I
Beta-prop_CAF1B_HIR1 PF24105 187 - 264 6.2e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 220 - 378 2.6e-08 TEP-1 second beta-propeller
WD40 PF00400 230 - 261 1.6e-08 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_1st PF25171 297 - 604 2.5e-09 WDR36/Utp21 first beta-propeller
WD40_Prp19 PF24814 325 - 519 7.7e-07 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 372 - 525 1.6e-06 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 436 - 564 9.6e-08 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 437 - 543 6e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 442 - 524 4.3e-09 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 449 - 604 2.9e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 450 - 605 9.2e-21 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 450 - 547 1.2e-09 CDC20/Fizzy WD40 domain
Beta-prop_WDR19_1st PF23389 462 - 604 3.9e-06 WDR19 first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 465 - 605 7.3e-10 CAF1B/HIR1 beta-propeller domain
Beta-prop_IFT140_1st PF23383 467 - 565 8.8e-06 IFT140 first beta-propeller
WD40_CDC20-Fz PF24807 487 - 606 1.3e-13 CDC20/Fizzy WD40 domain
WDR55 PF24796 494 - 604 2.6e-07 WDR55
Beta-prop_EML_2 PF23414 526 - 599 4.2e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 529 - 606 1.1e-07 TEP-1 second beta-propeller
WD40_WDHD1_1st PF24817 533 - 608 1.8e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 533 - 606 1.4e-10 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 533 - 608 1.4e-10 WDR3 first beta-propeller domain
WD40 PF00400 533 - 561 1.5e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1421
AasI GACNNNNNNGTC 2 cut(s) 152, 1670
AatII GACGTC 2 cut(s) 150, 231
Acc36I ACCTGC 1 cut(s) 1421
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 4 cut(s) 38, 156, 407, 1025
AccII CGCG 4 cut(s) 48, 161, 218, 384
AcoI YGGCCR 3 cut(s) 49, 177, 691
AcsI RAATTY 2 cut(s) 536, 565
AcuI CTGAAG 1 cut(s) 1238
AcyI GRCGYC 2 cut(s) 147, 228
AfaI GTAC 3 cut(s) 587, 1458, 1595
AfiI CCNNNNNNNGG 3 cut(s) 393, 836, 1184
AflII CTTAAG 1 cut(s) 1580
AflIII ACRYGT 2 cut(s) 824, 1667
AgsI TTSAA 9 cut(s) 289, 460, 535, 541, 1061, 1130, 1281, 1512, 1534
AjnI CCWGG 2 cut(s) 504, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 1374, 1406
Alw21I GWGCWC 3 cut(s) 168, 1729, 1770
Alw26I GTCTC 5 cut(s) 235, 552, 1091, 1263, 1632
AlwNI CAGNNNCTG 5 cut(s) 249, 745, 1211, 1295, 1358
Ama87I CYCGRG 2 cut(s) 298, 1566
AoxI GGCC 6 cut(s) 18, 49, 177, 524, 691, 865
ApeKI GCWGC 3 cut(s) 702, 1121, 1311
ApoI RAATTY 2 cut(s) 536, 565
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 2 cut(s) 48, 386
AspS9I GGNCC 4 cut(s) 255, 292, 324, 524
AsuC2I CCSGG 2 cut(s) 53, 176
AsuHPI GGTGA 5 cut(s) 506, 820, 1199, 1445, 1750
AsuII TTCGAA 1 cut(s) 434
AvaI CYCGRG 2 cut(s) 298, 1566
AvaII GGWCC 3 cut(s) 255, 292, 324
BalI TGGCCA 1 cut(s) 693
BamHI GGATCC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 1440, 1472
BbsI GAAGAC 1 cut(s) 659
Bbv12I GWGCWC 3 cut(s) 168, 1729, 1770
BbvI GCAGC 3 cut(s) 714, 1133, 1323
BceAI ACGGC 4 cut(s) 19, 137, 220, 1692
BcgI CGANNNNNNTGC 2 cut(s) 1596, 1630
BciT130I CCWGG 2 cut(s) 506, 831
BclI TGATCA 4 cut(s) 117, 880, 912, 1189
BcnI CCSGG 2 cut(s) 53, 176
BcoDI GTCTC 5 cut(s) 235, 552, 1091, 1263, 1632
BfaI CTAG 1 cut(s) 1460
BfmI CTRYAG 1 cut(s) 1425
BfrI CTTAAG 1 cut(s) 1580
BfuAI ACCTGC 1 cut(s) 1421
BglI GCCNNNNNGGC 2 cut(s) 176, 699
BisI GCNGC 6 cut(s) 49, 355, 703, 865, 1122, 1312
BlsI GCNGC 6 cut(s) 50, 356, 704, 866, 1123, 1313
Bme1390I CCNGG 4 cut(s) 53, 176, 506, 831
Bme18I GGWCC 3 cut(s) 255, 292, 324
BmeT110I CYCGRG 2 cut(s) 298, 1566
BmgT120I GGNCC 4 cut(s) 255, 292, 324, 524
BmiI GGNNCC 5 cut(s) 59, 92, 238, 256, 257
BmrFI CCNGG 4 cut(s) 53, 176, 506, 831
BmsI GCATC 5 cut(s) 1192, 1364, 1529, 1709, 1783
BpiI GAAGAC 1 cut(s) 659
BplI GAGNNNNNCTC 1 cut(s) 1804
BpmI CTGGAG 4 cut(s) 302, 576, 742, 1485
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 2 cut(s) 53, 176
BsaBI GATNNNNATC 1 cut(s) 62
BsaHI GRCGYC 2 cut(s) 147, 228
BsaI GGTCTC 1 cut(s) 1632
BsaJI CCNNGG 3 cut(s) 15, 52, 1336
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 836, 1184
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 2 cut(s) 319, 1657
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 2 cut(s) 506, 831
BseDI CCNNGG 3 cut(s) 15, 52, 1336
BseGI GGATG 6 cut(s) 680, 799, 853, 1408, 1700, 1798
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 393, 836, 1184
BseMII CTCAG 2 cut(s) 636, 939
BseNI ACTGG 2 cut(s) 319, 1657
BseRI GAGGAG 1 cut(s) 83
BseX3I CGGCCG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 714, 1133, 1323
Bsh1236I CGCG 4 cut(s) 48, 161, 218, 384
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 6 cut(s) 20, 51, 179, 526, 693, 867
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 3 cut(s) 168, 1729, 1770
BsiHKCI CYCGRG 2 cut(s) 298, 1566
BsiSI CCGG 5 cut(s) 52, 69, 88, 176, 234
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 3 cut(s) 393, 836, 1184
BsmAI GTCTC 5 cut(s) 235, 552, 1091, 1263, 1632
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 6 cut(s) 20, 51, 179, 526, 693, 867
Bso31I GGTCTC 1 cut(s) 1632
BsoBI CYCGRG 2 cut(s) 298, 1566
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 3 cut(s) 168, 1729, 1770
BspANI GGCC 6 cut(s) 20, 51, 179, 526, 693, 867
BspCNI CTCAG 2 cut(s) 635, 938
BspFNI CGCG 4 cut(s) 48, 161, 218, 384
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 5 cut(s) 59, 92, 238, 256, 257
BspMI ACCTGC 1 cut(s) 1421
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 1580
BspTNI GGTCTC 1 cut(s) 1632
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 2 cut(s) 319, 1657
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 3 cut(s) 15, 52, 1336
BssNI GRCGYC 2 cut(s) 147, 228
BssT1I CCWWGG 1 cut(s) 1336
Bst2UI CCWGG 2 cut(s) 506, 831
Bst6I CTCTTC 1 cut(s) 1443
BstACI GRCGYC 2 cut(s) 147, 228
BstAFI CTTAAG 1 cut(s) 1580
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 5 cut(s) 28, 32, 168, 352, 1698
BstDEI CTNAG 3 cut(s) 622, 716, 925
BstENI CCTNNNNNAGG 1 cut(s) 834
BstF5I GGATG 6 cut(s) 680, 799, 853, 1408, 1700, 1798
BstFNI CGCG 4 cut(s) 48, 161, 218, 384
BstHHI GCGC 2 cut(s) 48, 386
BstMAI GTCTC 5 cut(s) 235, 552, 1091, 1263, 1632
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 6 cut(s) 158, 167, 176, 185, 360, 699
BstNI CCWGG 2 cut(s) 506, 831
BstNSI RCATGY 4 cut(s) 492, 828, 856, 1671
BstSCI CCNGG 4 cut(s) 51, 174, 504, 829
BstSFI CTRYAG 1 cut(s) 1425
BstUI CGCG 4 cut(s) 48, 161, 218, 384
BstV1I GCAGC 3 cut(s) 714, 1133, 1323
BstV2I GAAGAC 1 cut(s) 659
BstX2I RGATCY 3 cut(s) 57, 110, 246
BstYI RGATCY 3 cut(s) 57, 110, 246
BstZI CGGCCG 1 cut(s) 49
BsuRI GGCC 6 cut(s) 20, 51, 179, 526, 693, 867
BtsCI GGATG 6 cut(s) 680, 799, 853, 1408, 1700, 1798
BtsIMutI CAGTG 3 cut(s) 326, 612, 1489
BveI ACCTGC 1 cut(s) 1421
Cac8I GCNNGC 5 cut(s) 28, 32, 168, 352, 1698
CaiI CAGNNNCTG 5 cut(s) 249, 745, 1211, 1295, 1358
CciI TCATGA 1 cut(s) 123
CfoI GCGC 2 cut(s) 48, 386
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 4 cut(s) 255, 292, 324, 524
CseI GACGC 1 cut(s) 207
Csp6I GTAC 3 cut(s) 586, 1457, 1594
CviQI GTAC 3 cut(s) 586, 1457, 1594
DdeI CTNAG 3 cut(s) 622, 716, 925
DrdI GACNNNNNNGTC 2 cut(s) 152, 1670
DseDI GACNNNNNNGTC 2 cut(s) 152, 1670
EaeI YGGCCR 3 cut(s) 49, 177, 691
EagI CGGCCG 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 1443
EarI CTCTTC 1 cut(s) 1443
EciI GGCGGA 2 cut(s) 211, 316
EclXI CGGCCG 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 1336
Eco147I AGGCCT 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 1632
Eco47I GGWCC 3 cut(s) 255, 292, 324
Eco52I CGGCCG 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 1238
Eco88I CYCGRG 2 cut(s) 298, 1566
EcoNI CCTNNNNNAGG 1 cut(s) 834
EcoO109I RGGNCCY 3 cut(s) 255, 292, 524
EcoRII CCWGG 2 cut(s) 504, 829
EcoT14I CCWWGG 1 cut(s) 1336
ErhI CCWWGG 1 cut(s) 1336
Esp3I CGTCTC 1 cut(s) 235
FaqI GGGAC 1 cut(s) 268
FauI CCCGC 1 cut(s) 1730
FbaI TGATCA 4 cut(s) 117, 880, 912, 1189
FblI GTMKAC 4 cut(s) 38, 156, 407, 1025
Fnu4HI GCNGC 6 cut(s) 49, 355, 703, 865, 1122, 1312
FokI GGATG 6 cut(s) 667, 806, 860, 1415, 1687, 1805
Fsp4HI GCNGC 6 cut(s) 49, 355, 703, 865, 1122, 1312
FspBI CTAG 1 cut(s) 1460
GlaI GCGC 2 cut(s) 47, 385
GluI GCNGC 6 cut(s) 49, 355, 703, 865, 1122, 1312
GsuI CTGGAG 4 cut(s) 302, 576, 742, 1485
HaeIII GGCC 6 cut(s) 20, 51, 179, 526, 693, 867
HapII CCGG 5 cut(s) 52, 69, 88, 176, 234
HgaI GACGC 1 cut(s) 207
HhaI GCGC 2 cut(s) 48, 386
Hin1I GRCGYC 2 cut(s) 147, 228
Hin6I GCGC 2 cut(s) 46, 384
HinP1I GCGC 2 cut(s) 46, 384
HincII GTYRAC 4 cut(s) 39, 1326, 1690, 1818
HindII GTYRAC 4 cut(s) 39, 1326, 1690, 1818
HindIII AAGCTT 1 cut(s) 1577
HinfI GANTC 7 cut(s) 192, 398, 724, 742, 1208, 1286, 1819
HpaII CCGG 5 cut(s) 52, 69, 88, 176, 234
HphI GGTGA 5 cut(s) 506, 820, 1199, 1445, 1750
Hpy166II GTNNAC 9 cut(s) 39, 157, 408, 574, 1026, 1326, 1344, 1690, 1818
Hpy188I TCNGA 5 cut(s) 306, 625, 671, 685, 747
Hpy8I GTNNAC 9 cut(s) 39, 157, 408, 574, 1026, 1326, 1344, 1690, 1818
Hpy99I CGWCG 9 cut(s) 40, 43, 149, 152, 188, 230, 314, 335, 350
HpyAV CCTTC 8 cut(s) 353, 397, 515, 625, 799, 1087, 1228, 1262
HpyCH4IV ACGT 3 cut(s) 147, 228, 1492
HpyCH4V TGCA 6 cut(s) 1121, 1205, 1367, 1414, 1520, 1700
HpyF10VI GCNNNNNNNGC 6 cut(s) 158, 167, 176, 185, 360, 699
HpyF3I CTNAG 3 cut(s) 622, 716, 925
HpySE526I ACGT 3 cut(s) 147, 228, 1492
Hsp92I GRCGYC 2 cut(s) 147, 228
HspAI GCGC 2 cut(s) 46, 384
KflI GGGWCCC 1 cut(s) 255
Ksp22I TGATCA 4 cut(s) 117, 880, 912, 1189
LmnI GCTCC 4 cut(s) 43, 96, 163, 1292
Lsp1109I GCAGC 3 cut(s) 714, 1133, 1323
LweI GCATC 5 cut(s) 1192, 1364, 1529, 1709, 1783
MaeI CTAG 1 cut(s) 1460
MaeII ACGT 3 cut(s) 147, 228, 1492
MaeIII GTNAC 6 cut(s) 484, 889, 932, 1348, 1493, 1711
MboII GAAGA 7 cut(s) 664, 676, 698, 985, 1142, 1145, 1460
MfeI CAATTG 1 cut(s) 1281
MflI RGATCY 3 cut(s) 57, 110, 246
MhlI GDGCHC 3 cut(s) 168, 1729, 1770
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 7 cut(s) 511, 536, 565, 1044, 1082, 1137, 1281
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 2 cut(s) 733, 1813
MmeI TCCRAC 3 cut(s) 108, 284, 1048
Mox20I TGGCCA 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 284
MscI TGGCCA 1 cut(s) 693
MseI TTAA 3 cut(s) 1050, 1332, 1581
MslI CAYNNNNRTG 2 cut(s) 823, 1473
Msp20I TGGCCA 1 cut(s) 693
MspA1I CMGCKG 2 cut(s) 758, 1124
MspCI CTTAAG 1 cut(s) 1580
MspI CCGG 5 cut(s) 52, 69, 88, 176, 234
MspR9I CCNGG 4 cut(s) 53, 176, 506, 831
MunI CAATTG 1 cut(s) 1281
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 506, 831
MvnI CGCG 4 cut(s) 48, 161, 218, 384
MwoI GCNNNNNNNGC 6 cut(s) 158, 167, 176, 185, 360, 699
NciI CCSGG 2 cut(s) 53, 176
NlaIV GGNNCC 5 cut(s) 59, 92, 238, 256, 257
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 3 cut(s) 484, 932, 1348
NspI RCATGY 4 cut(s) 492, 828, 856, 1671
NspV TTCGAA 1 cut(s) 434
PagI TCATGA 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 1421
PceI AGGCCT 1 cut(s) 20
PciI ACATGT 2 cut(s) 824, 1667
PcsI WCGNNNNNNNCGW 4 cut(s) 150, 222, 354, 1564
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 5 cut(s) 192, 398, 742, 1208, 1286
PflFI GACNNNGTC 1 cut(s) 751
PfoI TCCNGGA 1 cut(s) 829
PkrI GCNGC 6 cut(s) 50, 356, 704, 866, 1123, 1313
PleI GAGTC 2 cut(s) 732, 1813
PpsI GAGTC 2 cut(s) 732, 1813
PpuMI RGGWCCY 2 cut(s) 255, 292
PscI ACATGT 2 cut(s) 824, 1667
Psp5II RGGWCCY 2 cut(s) 255, 292
Psp6I CCWGG 2 cut(s) 504, 829
PspGI CCWGG 2 cut(s) 504, 829
PspN4I GGNNCC 5 cut(s) 59, 92, 238, 256, 257
PspPI GGNCC 4 cut(s) 255, 292, 324, 524
PspPPI RGGWCCY 2 cut(s) 255, 292
PstNI CAGNNNCTG 5 cut(s) 249, 745, 1211, 1295, 1358
PsuI RGATCY 3 cut(s) 57, 110, 246
PsyI GACNNNGTC 1 cut(s) 751
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 3 cut(s) 587, 1458, 1595
RsaNI GTAC 3 cut(s) 586, 1457, 1594
RseI CAYNNNNRTG 2 cut(s) 823, 1473
SalI GTCGAC 1 cut(s) 37
SaqAI TTAA 3 cut(s) 1050, 1332, 1581
SatI GCNGC 6 cut(s) 49, 355, 703, 865, 1122, 1312
Sau96I GGNCC 4 cut(s) 255, 292, 324, 524
SchI GAGTC 2 cut(s) 733, 1813
ScrFI CCNGG 4 cut(s) 53, 176, 506, 831
SduI GDGCHC 3 cut(s) 168, 1729, 1770
SfaNI GCATC 5 cut(s) 1192, 1364, 1529, 1709, 1783
SfcI CTRYAG 1 cut(s) 1425
SfuI TTCGAA 1 cut(s) 434
SgrDI CGTCGACG 1 cut(s) 37
SinI GGWCC 3 cut(s) 255, 292, 324
SmiMI CAYNNNNRTG 2 cut(s) 823, 1473
SmlI CTYRAG 2 cut(s) 275, 1580
SmoI CTYRAG 2 cut(s) 275, 1580
Sse9I AATT 7 cut(s) 511, 536, 565, 1044, 1082, 1137, 1281
SseBI AGGCCT 1 cut(s) 20
SspI AATATT 1 cut(s) 979
SspMI CTAG 1 cut(s) 1460
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 4 cut(s) 51, 174, 504, 829
StyI CCWWGG 1 cut(s) 1336
TaiI ACGT 3 cut(s) 150, 231, 1495
TaqI TCGA 8 cut(s) 38, 132, 144, 309, 423, 434, 563, 1606
TasI AATT 7 cut(s) 511, 536, 565, 1044, 1082, 1137, 1281
TatI WGTACW 1 cut(s) 1456
TauI GCSGC 3 cut(s) 51, 357, 867
TfiI GAWTC 5 cut(s) 192, 398, 742, 1208, 1286
Tru1I TTAA 3 cut(s) 1050, 1332, 1581
Tru9I TTAA 3 cut(s) 1050, 1332, 1581
TscAI CASTG 3 cut(s) 326, 619, 1489
TseFI GTSAC 3 cut(s) 484, 932, 1348
TseI GCWGC 3 cut(s) 702, 1121, 1311
Tsp45I GTSAC 3 cut(s) 484, 932, 1348
TspDTI ATGAA 8 cut(s) 140, 379, 534, 669, 975, 986, 1134, 1698
TspGWI ACGGA 4 cut(s) 56, 103, 348, 1460
TspRI CASTG 3 cut(s) 326, 619, 1489
Tth111I GACNNNGTC 1 cut(s) 751
Vha464I CTTAAG 1 cut(s) 1580
VpaK11BI GGWCC 3 cut(s) 255, 292, 324
XagI CCTNNNNNAGG 1 cut(s) 834
XapI RAATTY 2 cut(s) 536, 565
XceI RCATGY 4 cut(s) 492, 828, 856, 1671
XmiI GTMKAC 4 cut(s) 38, 156, 407, 1025
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 1460
ZraI GACGTC 2 cut(s) 148, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.