Rorug07G0016100
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005955
Physical Location & Seq
Forward (+)
1263752 .. 1265482
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0016100.1

Sequence Viewer

Length: 1014 bp
ATGTCCTCAAACCCACCACCACTCTTCACCTTCCTTTGCTTCCTCTTCACTTTGTTACCCTCCTCACTGGGTCTATCCGACCCGAAGCCGGCCTTAGTGCAGTCATTGCTTCCCAAATCTTCTCCCCCAGCTACAATCCCTGCATTCCCAGAGCAATCCGACATAGCCGGCTGCCCACTCCAGCTCCCTGATGAGCTCTTCCACGGCGTAAAGGCAGCCTGCCCCTCCAAAAAAGGCGACCCGACTGGCCATTTACAGCACAGCCGCTGCTGCCCAGTGCTGGCGGCGTGGCTATACTCGGCCTACTCCGCCACTGCACTGGGCAGAAGCGGCCAAGTAGGCCCTGCAGTGGCAGGTCACGGTAATACTACTACCACCGCTTATGACCCGCCACTGCTGCCTGATGACTCAGAAACTTGTGTTCAGGACTTGGGAAAGGCACTGAATGCAAAAGGAATAGAGCTGATGAAGCCAAATGAGACCTGTGACATGGTCTATTGCTACTGTGGGATCAGATTGCACCCTTTGACCTGCCCTGAGGCATTTTCAGTGAACCAAAAAGGGAAACTTGTTGGGGATGAGAGTGTCAAGAAGTTGGAGAAGAATTGCTTGAGCAGCAGTACCAATGTCAATAAGTTCCCTGGTCTTGGTGGCTGCTCCAAATGCCTGAACAGTCTCTACCTTCTTAACAAGAAGAAGACTTCCAATTCAAGCAAAATGGAGGACAGGACCACCAAAATGCACAACAAAGATTGTCAGCTGATGGGTCTCACATGGCTCCTTGCCAAGAATCGGACGGCCTACATGCACACCGTTACATCCGTCTTCCGGGCTATCATGGTAAGCAATGACGGCTCTGATCCTCAGTCGTGCACTCTCAACAGTGACGGAATGCCTCTAGCCGTCGATTCGTCGGAAATCTCAGATCAATCCTCGTCCAGCATCCTTGCGGTTTCATTCACATTCTGCACAGTGTCACTTACTTTGTTGTATGTGCAGCTTACCCTGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

337

Amino Acids

36.1

Weight (kDa)

7.43

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 344, 539
AciI CCGC 7 cut(s) 265, 284, 309, 330, 378, 389, 950
AclWI GGATC 2 cut(s) 518, 854
AcoI YGGCCR 2 cut(s) 247, 331
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 6 cut(s) 88, 280, 349, 647, 792, 828
AgsI TTSAA 1 cut(s) 711
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 6 cut(s) 131, 184, 196, 463, 760, 1000
AluI AGCT 6 cut(s) 131, 184, 196, 463, 760, 1000
Alw21I GWGCWC 2 cut(s) 198, 875
Alw26I GTCTC 3 cut(s) 473, 680, 773
Alw44I GTGCAC 1 cut(s) 871
AlwI GGATC 2 cut(s) 518, 854
AlwNI CAGNNNCTG 1 cut(s) 267
AoxI GGCC 6 cut(s) 90, 247, 300, 331, 340, 798
ApaLI GTGCAC 1 cut(s) 871
ApeKI GCWGC 8 cut(s) 171, 215, 267, 270, 397, 615, 654, 997
AspS9I GGNCC 2 cut(s) 341, 729
AsuC2I CCSGG 1 cut(s) 830
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 729
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 875
BalI TGGCCA 1 cut(s) 249
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 704, 817
Bbv12I GWGCWC 2 cut(s) 198, 875
BbvI GCAGC 8 cut(s) 158, 227, 254, 257, 384, 627, 641, 1009
BccI CCATC 1 cut(s) 757
BceAI ACGGC 4 cut(s) 220, 813, 868, 887
BciT130I CCWGG 1 cut(s) 642
BcnI CCSGG 1 cut(s) 830
BcoDI GTCTC 3 cut(s) 473, 680, 773
BfaI CTAG 1 cut(s) 899
BfmI CTRYAG 1 cut(s) 345
BfuAI ACCTGC 2 cut(s) 344, 539
BglI GCCNNNNNGGC 1 cut(s) 339
Bme1390I CCNGG 2 cut(s) 642, 830
Bme18I GGWCC 1 cut(s) 729
BmgT120I GGNCC 2 cut(s) 341, 729
BmiI GGNNCC 1 cut(s) 779
BmrFI CCNGG 2 cut(s) 642, 830
BmrI ACTGGG 3 cut(s) 77, 269, 329
BmsI GCATC 1 cut(s) 951
BmuI ACTGGG 3 cut(s) 77, 269, 329
BpiI GAAGAC 2 cut(s) 704, 817
BpmI CTGGAG 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 631
BpuMI CCSGG 1 cut(s) 830
BsaI GGTCTC 2 cut(s) 473, 773
BsaJI CCNNGG 2 cut(s) 202, 640
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 6 cut(s) 88, 280, 349, 647, 792, 828
Bse118I RCCGGY 2 cut(s) 88, 167
Bse1I ACTGG 4 cut(s) 72, 250, 275, 324
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 2 cut(s) 104, 853
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 2 cut(s) 202, 640
BseGI GGATG 3 cut(s) 583, 818, 942
BseLI CCNNNNNNNGG 6 cut(s) 88, 280, 349, 647, 792, 828
BseMI GCAATG 2 cut(s) 104, 853
BseMII CTCAG 4 cut(s) 423, 528, 878, 936
BseNI ACTGG 4 cut(s) 72, 250, 275, 324
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 875
BseXI GCAGC 8 cut(s) 158, 227, 254, 257, 384, 627, 641, 1009
BseYI CCCAGC 1 cut(s) 127
BsgI GTGCAG 3 cut(s) 119, 300, 952
BshFI GGCC 6 cut(s) 92, 249, 302, 333, 342, 800
BsiHKAI GWGCWC 2 cut(s) 198, 875
BsiSI CCGG 3 cut(s) 89, 168, 829
BslI CCNNNNNNNGG 6 cut(s) 88, 280, 349, 647, 792, 828
BsmAI GTCTC 3 cut(s) 473, 680, 773
BsmI GAATGC 3 cut(s) 143, 451, 897
BsnI GGCC 6 cut(s) 92, 249, 302, 333, 342, 800
Bso31I GGTCTC 2 cut(s) 473, 773
Bsp1286I GDGCHC 2 cut(s) 198, 875
Bsp143I GATC 3 cut(s) 510, 859, 925
BspACI CCGC 7 cut(s) 265, 284, 309, 330, 378, 389, 950
BspANI GGCC 6 cut(s) 92, 249, 302, 333, 342, 800
BspCNI CTCAG 4 cut(s) 422, 529, 877, 935
BspLI GGNNCC 1 cut(s) 779
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 2 cut(s) 344, 539
BspPI GGATC 2 cut(s) 518, 854
BspQI GCTCTTC 1 cut(s) 203
BspTNI GGTCTC 2 cut(s) 473, 773
BsrDI GCAATG 2 cut(s) 104, 853
BsrFI RCCGGY 2 cut(s) 88, 167
BsrI ACTGG 4 cut(s) 72, 250, 275, 324
BssAI RCCGGY 2 cut(s) 88, 167
BssECI CCNNGG 2 cut(s) 202, 640
BssMI GATC 3 cut(s) 510, 859, 925
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 6 cut(s) 362, 506, 674, 814, 884, 973
Bst6I CTCTTC 3 cut(s) 29, 50, 203
BstAPI GCANNNNNTGC 2 cut(s) 106, 446
BstC8I GCNNGC 4 cut(s) 90, 169, 220, 282
BstDEI CTNAG 5 cut(s) 94, 409, 537, 864, 922
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 3 cut(s) 583, 818, 942
BstKTI GATC 3 cut(s) 513, 862, 928
BstMAI GTCTC 3 cut(s) 473, 680, 773
BstMBI GATC 3 cut(s) 510, 859, 925
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 2 cut(s) 640, 828
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 875
BstV1I GCAGC 8 cut(s) 158, 227, 254, 257, 384, 627, 641, 1009
BstV2I GAAGAC 2 cut(s) 704, 817
BstXI CCANNNNNNTGG 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 6 cut(s) 92, 249, 302, 333, 342, 800
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 3 cut(s) 583, 818, 942
BtsI GCAGTG 3 cut(s) 312, 354, 392
BveI ACCTGC 2 cut(s) 344, 539
Cac8I GCNNGC 4 cut(s) 90, 169, 220, 282
CaiI CAGNNNCTG 1 cut(s) 267
Cfr10I RCCGGY 2 cut(s) 88, 167
Cfr13I GGNCC 2 cut(s) 341, 729
Csp6I GTAC 1 cut(s) 621
CviAII CATG 4 cut(s) 490, 774, 805, 838
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 5 cut(s) 94, 409, 537, 864, 922
DpnI GATC 3 cut(s) 512, 861, 927
DpnII GATC 3 cut(s) 510, 859, 925
EaeI YGGCCR 2 cut(s) 247, 331
Eam1104I CTCTTC 3 cut(s) 29, 50, 203
EarI CTCTTC 3 cut(s) 29, 50, 203
EciI GGCGGA 1 cut(s) 298
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 2 cut(s) 473, 773
Eco47I GGWCC 1 cut(s) 729
Eco53kI GAGCTC 1 cut(s) 196
Eco81I CCTNAGG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 640
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 4 cut(s) 493, 777, 808, 841
FaiI YATR 8 cut(s) 164, 295, 384, 491, 775, 806, 839, 993
FalI AAGNNNNNCTT 6 cut(s) 77, 109, 552, 584, 593, 625
FatI CATG 4 cut(s) 489, 773, 804, 837
FauI CCCGC 1 cut(s) 396
FokI GGATG 3 cut(s) 590, 805, 929
FriOI GRGCYC 1 cut(s) 198
FspBI CTAG 1 cut(s) 899
GsaI CCCAGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 6 cut(s) 92, 249, 302, 333, 342, 800
HapII CCGG 3 cut(s) 89, 168, 829
Hin1II CATG 4 cut(s) 493, 777, 808, 841
HinfI GANTC 3 cut(s) 407, 790, 908
HpaII CCGG 3 cut(s) 89, 168, 829
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 553, 873
Hpy188I TCNGA 8 cut(s) 79, 160, 412, 515, 795, 859, 916, 925
Hpy188III TCNNGA 2 cut(s) 425, 589
Hpy8I GTNNAC 2 cut(s) 553, 873
Hpy99I CGWCG 2 cut(s) 908, 916
HpyAV CCTTC 2 cut(s) 40, 692
HpyCH4III ACNGT 6 cut(s) 362, 506, 674, 814, 884, 973
HpyF3I CTNAG 5 cut(s) 94, 409, 537, 864, 922
Hsp92II CATG 4 cut(s) 493, 777, 808, 841
KroI GCCGGC 2 cut(s) 88, 167
KroNI GCCGGC 2 cut(s) 90, 169
Kzo9I GATC 3 cut(s) 510, 859, 925
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 3 cut(s) 189, 662, 783
Lsp1109I GCAGC 8 cut(s) 158, 227, 254, 257, 384, 627, 641, 1009
LweI GCATC 1 cut(s) 951
MaeI CTAG 1 cut(s) 899
MaeIII GTNAC 6 cut(s) 54, 356, 485, 814, 884, 975
MalI GATC 3 cut(s) 512, 861, 927
MboI GATC 3 cut(s) 510, 859, 925
MboII GAAGA 8 cut(s) 16, 37, 111, 190, 613, 706, 709, 817
MhlI GDGCHC 2 cut(s) 198, 875
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 2 cut(s) 604, 706
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 4 cut(s) 102, 183, 576, 894
Mox20I TGGCCA 1 cut(s) 249
MroNI GCCGGC 2 cut(s) 88, 167
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 1 cut(s) 737
Msp20I TGGCCA 1 cut(s) 249
MspA1I CMGCKG 2 cut(s) 267, 760
MspI CCGG 3 cut(s) 89, 168, 829
MspR9I CCNGG 2 cut(s) 642, 830
Mva1269I GAATGC 3 cut(s) 143, 451, 897
MvaI CCWGG 1 cut(s) 642
NaeI GCCGGC 2 cut(s) 90, 169
NciI CCSGG 1 cut(s) 830
NdeII GATC 3 cut(s) 510, 859, 925
NgoMIV GCCGGC 2 cut(s) 88, 167
NlaIII CATG 4 cut(s) 493, 777, 808, 841
NlaIV GGNNCC 1 cut(s) 779
NmeAIII GCCGAG 1 cut(s) 278
NmuCI GTSAC 4 cut(s) 356, 485, 884, 975
NspI RCATGY 1 cut(s) 808
PciSI GCTCTTC 1 cut(s) 203
PctI GAATGC 3 cut(s) 143, 451, 897
PdiI GCCGGC 2 cut(s) 90, 169
PfeI GAWTC 2 cut(s) 790, 908
PflFI GACNNNGTC 1 cut(s) 491
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 640
PspFI CCCAGC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 1 cut(s) 779
PspPI GGNCC 2 cut(s) 341, 729
PsrI GAACNNNNNNTAC 2 cut(s) 662, 694
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 267
PsyI GACNNNGTC 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 760
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
RseI CAYNNNNRTG 1 cut(s) 737
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 687
Sau3AI GATC 3 cut(s) 510, 859, 925
Sau96I GGNCC 2 cut(s) 341, 729
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 642, 830
SduI GDGCHC 2 cut(s) 198, 875
SfaNI GCATC 1 cut(s) 951
SfcI CTRYAG 1 cut(s) 345
SfiI GGCCNNNNNGGCC 1 cut(s) 339
SinI GGWCC 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 737
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
Sse9I AATT 2 cut(s) 604, 706
SsiI CCGC 7 cut(s) 265, 284, 309, 330, 378, 389, 950
SspMI CTAG 1 cut(s) 899
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 640, 828
TaaI ACNGT 6 cut(s) 362, 506, 674, 814, 884, 973
TaqI TCGA 1 cut(s) 906
TasI AATT 2 cut(s) 604, 706
TauI GCSGC 3 cut(s) 267, 287, 333
TfiI GAWTC 2 cut(s) 790, 908
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TseFI GTSAC 4 cut(s) 356, 485, 884, 975
TseI GCWGC 8 cut(s) 171, 215, 267, 270, 397, 615, 654, 997
Tsp45I GTSAC 4 cut(s) 356, 485, 884, 975
TspDTI ATGAA 2 cut(s) 482, 945
TspGWI ACGGA 2 cut(s) 811, 903
Tth111I GACNNNGTC 1 cut(s) 491
VneI GTGCAC 1 cut(s) 871
VpaK11BI GGWCC 1 cut(s) 729
XceI RCATGY 1 cut(s) 808
XspI CTAG 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.