Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005955

Physical Location & Seq

Genomic Coordinates Reverse (-)

64541731 .. 64545025

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGATCTCCAGTGTTCCAATTCATCTTAGCACATATTCTCCTAATGTTATCAACTTGACACACCTTGACCTTCATGGGCTTACAAAAGTTGTTGTTGGATCAATGATGTCTTTTGCTATACTGATGAATCACTGGTACATTCAAACAATTGATACCTTGGACAAAAGAAGAGGTCAGTACGTGCAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

63

Amino Acids

7.17

Weight (kDa)

8.21

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42080 AT5G42080 AT5G42080 AT5G42080
fragaria_vesca	FvH4_5g04750
malus_domestica	MD06G1108700.v1.1 MD14G1129600.v1.1
prunus_persica	Prupe.5G121300_v2.0.a1 Prupe.5G121500_v2.0.a1
pyrus_communis	pycom06g10210
rosa_chinensis	RchiOBHm_Chr7g0194521 RchiOBHm_Chr7g0194601
rosa_laevigata	RLG00000004190 RLG00000004194
rosa_multiflora	Rmu_ssc0000261.1_g000017 Rmu_ssc0000261.1_g000020
rosa_roxburghii	Rroxscaffold_3G00261250 Rroxscaffold_5G00385480
rosa_rugosa	Rorug07G0016100 Rorug07G0016400
rosa_samantha	Rh7AG143600 Rh7AG143900 Rh7BG144200 Rh7CG147800 Rh7CG148000 Rh7DG145400
rosa_wichuraiana	Rw7G012300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	106
AfaI	GTAC	2 cut(s)	137, 179
AgsI	TTSAA	1 cut(s)	143
AlwI	GGATC	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bse1I	ACTGG	2 cut(s)	9, 137
BseDI	CCNNGG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	9, 137
Bsp143I	GATC	2 cut(s)	3, 98
BspPI	GGATC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	9, 137
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	3, 98
BssT1I	CCWWGG	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	26, 189
BstKTI	GATC	2 cut(s)	6, 101
BstMBI	GATC	2 cut(s)	3, 98
BtsIMutI	CAGTG	2 cut(s)	16, 130
Csp6I	GTAC	2 cut(s)	136, 178
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	1 cut(s)	79
CviKI_1	RGCY	1 cut(s)	79
CviQI	GTAC	2 cut(s)	136, 178
DdeI	CTNAG	2 cut(s)	26, 189
DpnI	GATC	2 cut(s)	5, 100
DpnII	GATC	2 cut(s)	3, 98
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	77
FaiI	YATR	3 cut(s)	34, 75, 119
FatI	CATG	1 cut(s)	73
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	184
HpyF3I	CTNAG	2 cut(s)	26, 189
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	3, 98
LpnPI	CCDG	2 cut(s)	22, 118
MaeII	ACGT	1 cut(s)	180
MalI	GATC	2 cut(s)	5, 100
MboI	GATC	2 cut(s)	3, 98
MboII	GAAGA	1 cut(s)	180
MfeI	CAATTG	1 cut(s)	147
MluCI	AATT	2 cut(s)	18, 147
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	1 cut(s)	164
MunI	CAATTG	1 cut(s)	147
NdeII	GATC	2 cut(s)	3, 98
NlaIII	CATG	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	181
RsaI	GTAC	2 cut(s)	137, 179
RsaNI	GTAC	2 cut(s)	136, 178
Sau3AI	GATC	2 cut(s)	3, 98
SetI	ASST	5 cut(s)	66, 72, 158, 175, 183
SgeI	CNNG	6 cut(s)	21, 67, 77, 86, 145, 169
Sse9I	AATT	2 cut(s)	18, 147
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	183
TasI	AATT	2 cut(s)	18, 147
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	2 cut(s)	16, 137
TspDTI	ATGAA	3 cut(s)	11, 62, 140
TspRI	CASTG	2 cut(s)	16, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.