AT5G42140

Regulator of chromosome condensation (RCC1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009215
Physical Location & Seq
Reverse (-)
16837332 .. 16842493
5162 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42140.2

Sequence Viewer

Length: 3237 bp
ATGGCAGATCTTGTGAGTTATGGTAATGTCGTCCGAGACATCGAGCAGGCTTTAATTGCTTTGAAGAAAGGTGCTCAACTCTTGAAATATGGTCGGAAAGGAAAGCCAAAGTTCTGTCCCTTTAGACTTTCCAATGATGAGACATCTTTGATCTGGATTTCAAATGGTGGAGAAAAACGATTGAAGTTAGCAACTGTATCTAAGATTGTTCCAGGACAAAGAACTGCTGTTTTCCAACGTTACCTTCGCCCGGATAAGGATTATTTATCTTTTTCCCTTATATACTCTAACAGGAAGCGGACTCTTGACTTGATTTGCAAGGACAAAGTTGAGGCAGAGGTGTGGATAGCTGGCCTAAAAGCTTTGATATCTGGTCAGGCTGGCCGCTCTAAAATTGACGGCTGGAGTGATGGAGGCCTTTCTATTGCTGACAGTAGAGACTTGACATTAAGCAGTCCTACCAACAGCTCAGTTTGTGCTTCTCGAGATTTTAACATTGCTGATAGTCCCTACAATTCAACCAATTTTCCCAGGACTTCTAGAACTGAGAATTCTGTCAGTTCTGAAAGGTCACATGTGGCATCAGATAGCCCAAATATGTTAGTACGAGGAACTGGATCAGACGCGTTCCGGGTTAGTGTCTCTAGTGTTCAAAGCAGCTCAAGTCATGGTTCTGCTCCAGATGATTGTGATGCTCTAGGTGATGTTTATATATGGGGTGAAGTGCTATGTGAGAATGTTACCAAATTCGGAGCTGATAAGAATATTGGTTATCTTGGTTCAAGGTCTGATGTTCTGATTCCAAAGCCATTGGAGTCCAATGTAGTTTTGGATGTCCATCACATAGCATGTGGTGTTAAGCATGCTGCTCTAGTCTCTAGGCAAGGTGAGGTTTTTACATGGGGTGAAGCATCCGGAGGACGTCTTGGCCATGGAATGGGAAAAGATGTTACTGGACCACAGCTTATTGAGTCTCTAGCTGCTACTAGTATTGATTTTGTTGCCTGTGGTGAGTTCCATACATGCGCTGTCACAATGACAGGAGAGATTTACACATGGGGTGATGGAACACACAATGCAGGACTTCTCGGCCATGGTACCGATGTAAGTCACTGGATACCTAAGAGAATATCAGGTCCCCTTGAAGGTCTTCAAATTGCTTCCGTATCCTGTGGACCATGGCACACCGCTTTGATAACGTCAACTGGACAGCTTTTTACTTTTGGAGATGGGACGTTTGGTGTTTTAGGGCATGGTGACAAGGAAACTGTATTTTACCCGAGAGAAGTTGAATCTTTATCTGGTTTGAGGACCATTGCTGTTGCATGCGGTGTATGGCATGCTGCTGCAATAGTAGAAGTCATTGTCACTCACTCAAGTTCAAGTGTTTCATCAGGAAAGCTGTTCACATGGGGTGATGGTGACAAGAGCCGTCTTGGTCATGGAGATAAAGAGCCTCGGCTTAAACCAACATGTGTATCAGCTCTAATTGACCATACTTTTCACAGAGTTGCATGTGGACATAGTTTAACAGTTGGTTTGACAACATCGGGAAAAGTTTACACAATGGGTAGTACAGTATATGGTCAACTAGGGAATCCCAATGCTGATGGGAAACTTCCTTGCTTAGTAGAGGATAAACTAACAAAGGATTGTGTTGAAGAAATAGCATGTGGAGCTTATCATGTAGCAGTTTTAACATCTCGAAATGAAGTGTTTACATGGGGCAAGGGTGCCAATGGGAGATTAGGTCATGGAGATGTTGAGGACCGTAAGGCACCAACTCTTGTTGATGCTTTGAAAGAGAGACATGTAAAAAATATTGCATGCGGTTCAAACTTCACAGCAGCAATATGTCTTCATAAATGGGTTTCTGGTACGGAGCAATCTCAATGTTCAGCTTGTAGACAGGCTTTCGGATTCACACGAAAAAGACACAATTGTTACAACTGTGGACTTGTCCACTGCCATTCATGCAGTTCAAAGAAATCACTGAAAGCTGCTTTGGCCCCTAATCCAGGCAAGCCTTACCGTGTCTGCGATTCATGTCACTCTAAACTAAGTAAAGTGTCAGAAGCTAATATTGATAGCAGGAAGAATGTTATGCCACGACTTTCCGGTGAGAACAAGGACAGATTGGATAAAACTGAGATAAGATTGGCTAAATCAGGAATACCGTCAAATATAGATTTGATCAAGCAGTTGGATAACAGGGCAGCTAGACAAGGAAAGAAGGCAGACACATTCTCTCTTGTCCGCACTTCCCAAACACCTCTAACACAACTTAAAGATGCTTTGACTAATGTGGCTGACTTACGCCGTGGGCCACCAAAACCAGCAGTAACTCCGTCTAGCTCCAGACCTGTGTCACCTTTCTCAAGGAGATCTAGTCCTCCTCGTTCAGTCACTCCCATTCCTTTAAACGTTGGTCTTGGTTTTTCAACAAGTATAGCTGAGAGTTTGAAGAAGACAAATGAGCTTCTGAATCAGGAAGTAGTCAGATTGCGCGCTCAGGCCGAGAGTCTGAGGCACCGATGCGAGGTCCAAGAATTCGAAGTCCAGAAATCTGTGAAAAAAGTACAAGAAGCAATGAGCCTGGCAGCAGAGGAATCTGCCAAATCAGAAGCCGCAAAAGAAGTTATAAAATCTCTAACAGCACAGGTCAAGGATATAGCTGCGCTGCTACCACCGGGTGCTTACGAAGCTGAGACCACACGGACAGCTAATTTATTGAACGGGTTTGAGCAAAATGGATTTCACTTTACGAATGCAAATGGACAACGTCAATCAAGATCTGATTCAATGAGCGACACCTCACTTGCTTCTCCTTTGGCTATGCCCGCTCGTTCAATGAATGGACTTTGGCGGAATTCGCAGTCGCCAAGAAACACAGATGCAAGCATGGGCGAACTTCTAAGTGAGGGGGTCCGAATCAGTAATGGTTTCTCAGAAGATGGACGAAACTCAAGAAGCTCAGCAGCATCAGCTTCAAATGCTTCTCAAGTGGAGGCAGAGTGGATTGAACAATATGAACCTGGTGTTTATATAACACTTTTGGCTCTAGGCGATGGAACTAGAGATCTCAAACGTGTGCGCTTTAGCCGGCGACGATTCAGGGAGCAACAAGCAGAAACATGGTGGTCAGAGAATCGCGAAAGAGTATACGAGAAGTACAACATTCGCGGTACCGATAGATCAAGTGTGGCAACATCACCTATATCTCAATCACAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

1078

Amino Acids

116.95

Weight (kDa)

8.95

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_12 PF16457 15 - 123 1.2e-09 Pleckstrin homology domain
WD40_RLD PF25390 247 - 617 2.5e-77 RCC1-like domain
RCC1 PF00415 295 - 344 2e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 333 - 358 7.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 348 - 399 7.1e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 386 - 414 1.9e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 403 - 451 2e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 465 - 513 2.4e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 517 - 566 2.2e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 554 - 581 1.7e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 571 - 618 5.8e-14 Regulator of chromosome condensation (RCC1) repeat
FYVE PF01363 622 - 688 1.6e-14 FYVE zinc finger
BRX_N PF13713 869 - 904 2.6e-11 Transcription factor BRX N-terminal domain
BRX PF08381 1003 - 1058 8.9e-29 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2642
AatII GACGTC 1 cut(s) 925
Acc65I GGTACC 2 cut(s) 1097, 3185
AccB1I GGYRCC 5 cut(s) 1097, 1733, 1777, 2529, 3185
AccB7I CCANNNNNTGG 1 cut(s) 937
AccBSI CCGCTC 2 cut(s) 387, 2843
AccI GTMKAC 2 cut(s) 1906, 3162
AccII CGCG 4 cut(s) 626, 2508, 3153, 3183
AccIII TCCGGA 1 cut(s) 914
AclI AACGTT 2 cut(s) 238, 2424
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 3 cut(s) 382, 928, 1090
AcsI RAATTY 4 cut(s) 550, 746, 2549, 2869
AcyI GRCGYC 1 cut(s) 922
AdeI CACNNNGTG 1 cut(s) 2693
AfaI GTAC 7 cut(s) 606, 1099, 1576, 1879, 2580, 3173, 3187
AfiI CCNNNNNNNGG 6 cut(s) 250, 256, 937, 1145, 2018, 2539
AflIII ACRYGT 5 cut(s) 574, 624, 1472, 1810, 3088
AhlI ACTAGT 1 cut(s) 986
AjnI CCWGG 5 cut(s) 211, 530, 2017, 2595, 3034
AjuI GAANNNNNNNTTGG 4 cut(s) 228, 260, 1988, 2020
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 8 cut(s) 30, 134, 432, 646, 880, 978, 1801, 2702
AlwI GGATC 1 cut(s) 625
Ama87I CYCGRG 2 cut(s) 483, 1279
Aor13HI TCCGGA 1 cut(s) 914
AoxI GGCC 8 cut(s) 352, 382, 415, 928, 1090, 2007, 2324, 2514
ApoI RAATTY 4 cut(s) 550, 746, 2549, 2869
Asp700I GAANNNNTTC 1 cut(s) 1149
Asp718I GGTACC 2 cut(s) 1097, 3185
AspLEI GCGC 5 cut(s) 1028, 2508, 2510, 2680, 3096
AspS9I GGNCC 9 cut(s) 956, 1136, 1175, 1311, 1768, 2008, 2324, 2542, 2926
AsuC2I CCSGG 3 cut(s) 251, 632, 2691
AsuII TTCGAA 1 cut(s) 2553
AvaI CYCGRG 2 cut(s) 483, 1279
AvaII GGWCC 7 cut(s) 956, 1136, 1175, 1311, 1768, 2542, 2926
BaeI ACNNNNGTAYC 4 cut(s) 1089, 1122, 1461, 1494
BalI TGGCCA 1 cut(s) 930
BanI GGYRCC 5 cut(s) 1097, 1733, 1777, 2529, 3185
BbsI GAAGAC 3 cut(s) 1142, 1850, 2474
Bbv12I GWGCWC 1 cut(s) 76
BccI CCATC 8 cut(s) 404, 846, 1058, 1223, 1412, 1604, 2948, 3062
BceAI ACGGC 3 cut(s) 415, 1416, 2304
BciT130I CCWGG 5 cut(s) 213, 532, 2019, 2597, 3036
BciVI GTATCC 2 cut(s) 1110, 1177
BclI TGATCA 1 cut(s) 2193
BcnI CCSGG 3 cut(s) 251, 632, 2691
BcoDI GTCTC 8 cut(s) 30, 134, 432, 646, 880, 978, 1801, 2702
BcuI ACTAGT 1 cut(s) 986
BfuI GTATCC 2 cut(s) 1110, 1177
BglII AGATCT 4 cut(s) 7, 2384, 2792, 3079
BlpI GCTNAGC 1 cut(s) 2974
Bme1390I CCNGG 8 cut(s) 213, 251, 532, 632, 2019, 2597, 2691, 3036
Bme18I GGWCC 7 cut(s) 956, 1136, 1175, 1311, 1768, 2542, 2926
BmeT110I CYCGRG 2 cut(s) 483, 1279
BmgT120I GGNCC 9 cut(s) 956, 1136, 1175, 1311, 1768, 2008, 2324, 2542, 2926
BmiI GGNNCC 8 cut(s) 1099, 1138, 1735, 1779, 2010, 2531, 2927, 3187
BmrFI CCNGG 8 cut(s) 213, 251, 532, 632, 2019, 2597, 2691, 3036
BmsI GCATC 8 cut(s) 590, 682, 920, 1783, 2281, 2525, 2884, 2990
BoxI GACNNNNGTC 1 cut(s) 2365
BpiI GAAGAC 3 cut(s) 1142, 1850, 2474
BpmI CTGGAG 3 cut(s) 424, 663, 2341
Bpu10I CCTNAGC 1 cut(s) 2511
Bpu1102I GCTNAGC 1 cut(s) 2974
Bpu14I TTCGAA 1 cut(s) 2553
BpuEI CTTGAG 5 cut(s) 646, 1360, 2362, 2950, 2985
BpuMI CCSGG 3 cut(s) 251, 632, 2691
BsaBI GATNNNNATC 1 cut(s) 837
BsaHI GRCGYC 1 cut(s) 922
BsaI GGTCTC 1 cut(s) 2702
BsaJI CCNNGG 6 cut(s) 530, 931, 1093, 1178, 1457, 2320
BsaWI WCCGGW 2 cut(s) 914, 2117
BsaXI ACNNNNNCTCC 6 cut(s) 1735, 1765, 2374, 2404, 2999, 3029
Bsc4I CCNNNNNNNGG 6 cut(s) 250, 256, 937, 1145, 2018, 2539
Bse118I RCCGGY 1 cut(s) 3102
Bse1I ACTGG 4 cut(s) 619, 958, 1118, 1210
Bse3DI GCAATG 3 cut(s) 495, 1314, 2595
Bse8I GATNNNNATC 1 cut(s) 837
BseAI TCCGGA 1 cut(s) 914
BseBI CCWGG 5 cut(s) 213, 532, 2019, 2597, 3036
BseDI CCNNGG 6 cut(s) 530, 931, 1093, 1178, 1457, 2320
BseGI GGATG 2 cut(s) 838, 911
BseJI GATNNNNATC 1 cut(s) 837
BseLI CCNNNNNNNGG 6 cut(s) 250, 256, 937, 1145, 2018, 2539
BseMI GCAATG 3 cut(s) 495, 1314, 2595
BseMII CTCAG 9 cut(s) 483, 537, 2139, 2445, 2516, 2525, 2697, 2961, 2988
BseNI ACTGG 4 cut(s) 619, 958, 1118, 1210
BsePI GCGCGC 1 cut(s) 2506
BseRI GAGGAG 1 cut(s) 2385
Bsh1236I CGCG 4 cut(s) 626, 2508, 3153, 3183
BshFI GGCC 8 cut(s) 354, 384, 417, 930, 1092, 2009, 2326, 2516
BshNI GGYRCC 5 cut(s) 1097, 1733, 1777, 2529, 3185
BsiHKAI GWGCWC 1 cut(s) 76
BsiHKCI CYCGRG 2 cut(s) 483, 1279
BsiSI CCGG 6 cut(s) 251, 631, 915, 2118, 2690, 3103
BslFI GGGAC 4 cut(s) 102, 492, 1122, 1246
BslI CCNNNNNNNGG 6 cut(s) 250, 256, 937, 1145, 2018, 2539
BsmAI GTCTC 8 cut(s) 30, 134, 432, 646, 880, 978, 1801, 2702
BsmFI GGGAC 4 cut(s) 102, 492, 1122, 1246
BsmI GAATGC 1 cut(s) 2773
BsnI GGCC 8 cut(s) 354, 384, 417, 930, 1092, 2009, 2326, 2516
Bso31I GGTCTC 1 cut(s) 2702
BsoBI CYCGRG 2 cut(s) 483, 1279
Bsp119I TTCGAA 1 cut(s) 2553
Bsp1286I GDGCHC 1 cut(s) 76
Bsp13I TCCGGA 1 cut(s) 914
Bsp143I GATC 8 cut(s) 7, 150, 617, 2193, 2384, 2792, 3079, 3194
Bsp1720I GCTNAGC 1 cut(s) 2974
Bsp19I CCATGG 3 cut(s) 931, 1093, 1178
Bsp68I TCGCGA 1 cut(s) 3153
BspANI GGCC 8 cut(s) 354, 384, 417, 930, 1092, 2009, 2326, 2516
BspCNI CTCAG 9 cut(s) 482, 538, 2140, 2446, 2517, 2524, 2698, 2960, 2987
BspEI TCCGGA 1 cut(s) 914
BspFNI CGCG 4 cut(s) 626, 2508, 3153, 3183
BspLI GGNNCC 8 cut(s) 1099, 1138, 1735, 1779, 2010, 2531, 2927, 3187
BspPI GGATC 1 cut(s) 625
BspT104I TTCGAA 1 cut(s) 2553
BspT107I GGYRCC 5 cut(s) 1097, 1733, 1777, 2529, 3185
BspTNI GGTCTC 1 cut(s) 2702
BsrBI CCGCTC 2 cut(s) 387, 2843
BsrDI GCAATG 3 cut(s) 495, 1314, 2595
BsrFI RCCGGY 1 cut(s) 3102
BsrI ACTGG 4 cut(s) 619, 958, 1118, 1210
BssAI RCCGGY 1 cut(s) 3102
BssECI CCNNGG 6 cut(s) 530, 931, 1093, 1178, 1457, 2320
BssHII GCGCGC 1 cut(s) 2506
BssMI GATC 8 cut(s) 7, 150, 617, 2193, 2384, 2792, 3079, 3194
BssNAI GTATAC 1 cut(s) 3163
BssNI GRCGYC 1 cut(s) 922
BssT1I CCWWGG 3 cut(s) 931, 1093, 1178
Bst1107I GTATAC 1 cut(s) 3163
Bst2UI CCWGG 5 cut(s) 213, 532, 2019, 2597, 3036
Bst4CI ACNGT 9 cut(s) 196, 434, 1270, 1534, 1579, 1772, 1952, 2033, 2178
BstACI GRCGYC 1 cut(s) 922
BstBI TTCGAA 1 cut(s) 2553
BstDSI CCRYGG 4 cut(s) 931, 1093, 1178, 2320
BstENI CCTNNNNNAGG 1 cut(s) 2016
BstF5I GGATG 2 cut(s) 838, 911
BstFNI CGCG 4 cut(s) 626, 2508, 3153, 3183
BstHHI GCGC 5 cut(s) 1028, 2508, 2510, 2680, 3096
BstKTI GATC 8 cut(s) 10, 153, 620, 2196, 2387, 2795, 3082, 3197
BstMAI GTCTC 8 cut(s) 30, 134, 432, 646, 880, 978, 1801, 2702
BstMBI GATC 8 cut(s) 7, 150, 617, 2193, 2384, 2792, 3079, 3194
BstMWI GCNNNNNNNGC 9 cut(s) 56, 1676, 1974, 2006, 2702, 2840, 2872, 2984, 2993
BstNI CCWGG 5 cut(s) 213, 532, 2019, 2597, 3036
BstPAI GACNNNNGTC 1 cut(s) 2365
BstSCI CCNGG 8 cut(s) 211, 249, 530, 630, 2017, 2595, 2689, 3034
BstUI CGCG 4 cut(s) 626, 2508, 3153, 3183
BstV2I GAAGAC 3 cut(s) 1142, 1850, 2474
BstX2I RGATCY 4 cut(s) 7, 2384, 2792, 3079
BstYI RGATCY 4 cut(s) 7, 2384, 2792, 3079
BstZ17I GTATAC 1 cut(s) 3163
BsuI GTATCC 2 cut(s) 1110, 1177
BsuRI GGCC 8 cut(s) 354, 384, 417, 930, 1092, 2009, 2326, 2516
BtgI CCRYGG 4 cut(s) 931, 1093, 1178, 2320
BtgZI GCGATG 1 cut(s) 3081
BtsCI GGATG 2 cut(s) 838, 911
BtsI GCAGTG 1 cut(s) 1963
BtsIMutI CAGTG 3 cut(s) 1111, 1963, 1991
BtuMI TCGCGA 1 cut(s) 3153
CfoI GCGC 5 cut(s) 1028, 2508, 2510, 2680, 3096
Cfr10I RCCGGY 1 cut(s) 3102
Cfr13I GGNCC 9 cut(s) 956, 1136, 1175, 1311, 1768, 2008, 2324, 2542, 2926
CseI GACGC 1 cut(s) 632
CsiI ACCWGGT 1 cut(s) 3034
Csp6I GTAC 7 cut(s) 605, 1098, 1575, 1878, 2579, 3172, 3186
CviQI GTAC 7 cut(s) 605, 1098, 1575, 1878, 2579, 3172, 3186
DpnI GATC 8 cut(s) 9, 152, 619, 2195, 2386, 2794, 3081, 3196
DpnII GATC 8 cut(s) 7, 150, 617, 2193, 2384, 2792, 3079, 3194
DraI TTTAAA 1 cut(s) 2421
DraIII CACNNNGTG 1 cut(s) 2693
EaeI YGGCCR 3 cut(s) 382, 928, 1090
EciI GGCGGA 1 cut(s) 2881
Eco130I CCWWGG 3 cut(s) 931, 1093, 1178
Eco147I AGGCCT 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 2702
Eco32I GATATC 1 cut(s) 369
Eco47I GGWCC 7 cut(s) 956, 1136, 1175, 1311, 1768, 2542, 2926
Eco88I CYCGRG 2 cut(s) 483, 1279
EcoNI CCTNNNNNAGG 1 cut(s) 2016
EcoO109I RGGNCCY 1 cut(s) 1136
EcoRI GAATTC 3 cut(s) 550, 2549, 2869
EcoRII CCWGG 5 cut(s) 211, 530, 2017, 2595, 3034
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 3 cut(s) 931, 1093, 1178
ErhI CCWWGG 3 cut(s) 931, 1093, 1178
FaqI GGGAC 4 cut(s) 102, 492, 1122, 1246
FauI CCCGC 1 cut(s) 2848
FbaI TGATCA 1 cut(s) 2193
FblI GTMKAC 2 cut(s) 1906, 3162
FokI GGATG 2 cut(s) 845, 898
GlaI GCGC 5 cut(s) 1027, 2507, 2509, 2679, 3095
GsuI CTGGAG 3 cut(s) 424, 663, 2341
HaeIII GGCC 8 cut(s) 354, 384, 417, 930, 1092, 2009, 2326, 2516
HapII CCGG 6 cut(s) 251, 631, 915, 2118, 2690, 3103
HgaI GACGC 1 cut(s) 632
HhaI GCGC 5 cut(s) 1028, 2508, 2510, 2680, 3096
Hin1I GRCGYC 1 cut(s) 922
Hin6I GCGC 5 cut(s) 1026, 2506, 2508, 2678, 3094
HinP1I GCGC 5 cut(s) 1026, 2506, 2508, 2678, 3094
HincII GTYRAC 2 cut(s) 1203, 1589
HindII GTYRAC 2 cut(s) 1203, 1589
HindIII AAGCTT 1 cut(s) 360
HpaII CCGG 6 cut(s) 251, 631, 915, 2118, 2690, 3103
Hpy99I CGWCG 1 cut(s) 3111
HpyAV CCTTC 3 cut(s) 254, 1139, 2227
HpyCH4III ACNGT 9 cut(s) 196, 434, 1270, 1534, 1579, 1772, 1952, 2033, 2178
HpyCH4IV ACGT 7 cut(s) 238, 922, 1199, 1235, 2424, 2782, 3088
HpyCH4V TGCA 9 cut(s) 318, 1079, 1325, 1349, 1514, 1826, 1977, 2771, 2897
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 1676, 1974, 2006, 2702, 2840, 2872, 2984, 2993
HpySE526I ACGT 7 cut(s) 238, 922, 1199, 1235, 2424, 2782, 3088
Hsp92I GRCGYC 1 cut(s) 922
HspAI GCGC 5 cut(s) 1026, 2506, 2508, 2678, 3094
Kpn2I TCCGGA 1 cut(s) 914
KpnI GGTACC 2 cut(s) 1101, 3189
KroI GCCGGC 1 cut(s) 3102
KroNI GCCGGC 1 cut(s) 3104
Ksp22I TGATCA 1 cut(s) 2193
Kzo9I GATC 8 cut(s) 7, 150, 617, 2193, 2384, 2792, 3079, 3194
LmnI GCTCC 6 cut(s) 682, 752, 1676, 1882, 2360, 3118
LweI GCATC 8 cut(s) 590, 682, 920, 1783, 2281, 2525, 2884, 2990
MabI ACCWGGT 1 cut(s) 3034
MaeII ACGT 7 cut(s) 238, 922, 1199, 1235, 2424, 2782, 3088
MalI GATC 8 cut(s) 9, 152, 619, 2195, 2386, 2794, 3081, 3196
MbiI CCGCTC 2 cut(s) 387, 2843
MboI GATC 8 cut(s) 7, 150, 617, 2193, 2384, 2792, 3079, 3194
MboII GAAGA 8 cut(s) 76, 1142, 1673, 1850, 2107, 2476, 2479, 2963
MfeI CAATTG 1 cut(s) 1939
MflI RGATCY 4 cut(s) 7, 2384, 2792, 3079
MhlI GDGCHC 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 930
MluI ACGCGT 1 cut(s) 624
MluNI TGGCCA 1 cut(s) 930
MlyI GAGTC 4 cut(s) 295, 824, 980, 2530
MmeI TCCRAC 3 cut(s) 74, 259, 2184
Mox20I TGGCCA 1 cut(s) 930
MroI TCCGGA 1 cut(s) 914
MroNI GCCGGC 1 cut(s) 3102
MroXI GAANNNNTTC 1 cut(s) 1149
MscI TGGCCA 1 cut(s) 930
MseI TTAA 9 cut(s) 53, 449, 492, 858, 1464, 1529, 1697, 2286, 2420
MslI CAYNNNNRTG 1 cut(s) 1758
Msp20I TGGCCA 1 cut(s) 930
MspI CCGG 6 cut(s) 251, 631, 915, 2118, 2690, 3103
MspR9I CCNGG 8 cut(s) 213, 251, 532, 632, 2019, 2597, 2691, 3036
MunI CAATTG 1 cut(s) 1939
Mva1269I GAATGC 1 cut(s) 2773
MvaI CCWGG 5 cut(s) 213, 532, 2019, 2597, 3036
MvnI CGCG 4 cut(s) 626, 2508, 3153, 3183
MwoI GCNNNNNNNGC 9 cut(s) 56, 1676, 1974, 2006, 2702, 2840, 2872, 2984, 2993
NaeI GCCGGC 1 cut(s) 3104
NciI CCSGG 3 cut(s) 251, 632, 2691
NcoI CCATGG 3 cut(s) 931, 1093, 1178
NdeII GATC 8 cut(s) 7, 150, 617, 2193, 2384, 2792, 3079, 3194
NgoMIV GCCGGC 1 cut(s) 3102
NlaIV GGNNCC 8 cut(s) 1099, 1138, 1735, 1779, 2010, 2531, 2927, 3187
NmeAIII GCCGAG 3 cut(s) 1068, 1438, 2542
NmuCI GTSAC 9 cut(s) 570, 1030, 1109, 1256, 1366, 1421, 2048, 2367, 2404
NruI TCGCGA 1 cut(s) 3153
NspV TTCGAA 1 cut(s) 2553
PaeI GCATGC 4 cut(s) 866, 1329, 1343, 1830
PaeR7I CTCGAG 1 cut(s) 483
PauI GCGCGC 1 cut(s) 2506
PceI AGGCCT 1 cut(s) 417
PciI ACATGT 3 cut(s) 574, 1472, 1810
PctI GAATGC 1 cut(s) 2773
PdiI GCCGGC 1 cut(s) 3104
PdmI GAANNNNTTC 1 cut(s) 1149
PflFI GACNNNGTC 1 cut(s) 2781
PflMI CCANNNNNTGG 1 cut(s) 937
PfoI TCCNGGA 1 cut(s) 211
PleI GAGTC 4 cut(s) 295, 823, 979, 2529
PpsI GAGTC 4 cut(s) 295, 823, 979, 2529
PpuMI RGGWCCY 1 cut(s) 1136
PscI ACATGT 3 cut(s) 574, 1472, 1810
PshAI GACNNNNGTC 1 cut(s) 2365
PsiI TTATAA 1 cut(s) 2642
Psp1406I AACGTT 2 cut(s) 238, 2424
Psp5II RGGWCCY 1 cut(s) 1136
Psp6I CCWGG 5 cut(s) 211, 530, 2017, 2595, 3034
PspGI CCWGG 5 cut(s) 211, 530, 2017, 2595, 3034
PspN4I GGNNCC 8 cut(s) 1099, 1138, 1735, 1779, 2010, 2531, 2927, 3187
PspPI GGNCC 9 cut(s) 956, 1136, 1175, 1311, 1768, 2008, 2324, 2542, 2926
PspPPI RGGWCCY 1 cut(s) 1136
PsuI RGATCY 4 cut(s) 7, 2384, 2792, 3079
PsyI GACNNNGTC 1 cut(s) 2781
PteI GCGCGC 1 cut(s) 2506
RruI TCGCGA 1 cut(s) 3153
RsaI GTAC 7 cut(s) 606, 1099, 1576, 1879, 2580, 3173, 3187
RsaNI GTAC 7 cut(s) 605, 1098, 1575, 1878, 2579, 3172, 3186
RseI CAYNNNNRTG 1 cut(s) 1758
SaqAI TTAA 9 cut(s) 53, 449, 492, 858, 1464, 1529, 1697, 2286, 2420
Sau3AI GATC 8 cut(s) 7, 150, 617, 2193, 2384, 2792, 3079, 3194
Sau96I GGNCC 9 cut(s) 956, 1136, 1175, 1311, 1768, 2008, 2324, 2542, 2926
SchI GAGTC 4 cut(s) 295, 824, 980, 2530
ScrFI CCNGG 8 cut(s) 213, 251, 532, 632, 2019, 2597, 2691, 3036
SduI GDGCHC 1 cut(s) 76
SexAI ACCWGGT 1 cut(s) 3034
SfaNI GCATC 8 cut(s) 590, 682, 920, 1783, 2281, 2525, 2884, 2990
Sfr274I CTCGAG 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 2553
SinI GGWCC 7 cut(s) 956, 1136, 1175, 1311, 1768, 2542, 2926
SlaI CTCGAG 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 1758
SmlI CTYRAG 6 cut(s) 483, 661, 1375, 2377, 2965, 3000
SmoI CTYRAG 6 cut(s) 483, 661, 1375, 2377, 2965, 3000
SpeI ACTAGT 1 cut(s) 986
SphI GCATGC 4 cut(s) 866, 1329, 1343, 1830
SseBI AGGCCT 1 cut(s) 417
SspI AATATT 3 cut(s) 766, 1822, 2083
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 8 cut(s) 211, 249, 530, 630, 2017, 2595, 2689, 3034
StyI CCWWGG 3 cut(s) 931, 1093, 1178
TaaI ACNGT 9 cut(s) 196, 434, 1270, 1534, 1579, 1772, 1952, 2033, 2178
TaiI ACGT 7 cut(s) 241, 925, 1202, 1238, 2427, 2785, 3091
TaqI TCGA 4 cut(s) 42, 484, 1705, 2553
TatI WGTACW 3 cut(s) 1574, 2578, 3171
TauI GCSGC 2 cut(s) 387, 2630
Tru1I TTAA 9 cut(s) 53, 449, 492, 858, 1464, 1529, 1697, 2286, 2420
Tru9I TTAA 9 cut(s) 53, 449, 492, 858, 1464, 1529, 1697, 2286, 2420
TscAI CASTG 3 cut(s) 1118, 1970, 1998
TseFI GTSAC 9 cut(s) 570, 1030, 1109, 1256, 1366, 1421, 2048, 2367, 2404
Tsp45I GTSAC 9 cut(s) 570, 1030, 1109, 1256, 1366, 1421, 2048, 2367, 2404
TspDTI ATGAA 7 cut(s) 1380, 1725, 1850, 1962, 2034, 2867, 3045
TspGWI ACGGA 4 cut(s) 1153, 1895, 2337, 2731
TspRI CASTG 3 cut(s) 1118, 1970, 1998
Tth111I GACNNNGTC 1 cut(s) 2781
Van91I CCANNNNNTGG 1 cut(s) 937
VpaK11BI GGWCC 7 cut(s) 956, 1136, 1175, 1311, 1768, 2542, 2926
XagI CCTNNNNNAGG 1 cut(s) 2016
XapI RAATTY 4 cut(s) 550, 746, 2549, 2869
XbaI TCTAGA 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 826
XhoI CTCGAG 1 cut(s) 483
XmiI GTMKAC 2 cut(s) 1906, 3162
XmnI GAANNNNTTC 1 cut(s) 1149
ZraI GACGTC 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.