Pleckstrin homology domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G76950 AT5G42140 AT5G42140 |
| fragaria_vesca | FvH4_2g14280 FvH4_2g14280 FvH4_2g14280 FvH4_2g14280 |
| malus_domestica | MD05G1020200.v1.1 MD10G1021300.v1.1 |
| prunus_persica | Prupe.8G024300_v2.0.a1 |
| pyrus_communis | pycom05g01180 pycom10g01440 |
| rosa_chinensis | RchiOBHm_Chr6g0276571 |
| rosa_laevigata | RLG00000013389 |
| rosa_multiflora | Rmu_ssc0000059.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00192170 |
| rosa_rugosa | Rorug06G0101800 |
| rosa_samantha | Rh6AG212600 Rh6BG217500 Rh6CG219800 Rh6DG209400 |
| rosa_wichuraiana | Rw6G018580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2663 |
| AarI | CACCTGC | 1 cut(s) | 3334 |
| Acc36I | ACCTGC | 2 cut(s) | 2898, 3334 |
| AccBSI | CCGCTC | 2 cut(s) | 2268, 2273 |
| AccI | GTMKAC | 2 cut(s) | 717, 1915 |
| AccIII | TCCGGA | 1 cut(s) | 3014 |
| AciI | CCGC | 8 cut(s) | 1010, 1527, 2266, 2271, 2332, 2676, 2696, 3145 |
| AclWI | GGATC | 5 cut(s) | 628, 2045, 2858, 2871, 3042 |
| AcsI | RAATTY | 4 cut(s) | 559, 1137, 2773, 3055 |
| AcuI | CTGAAG | 4 cut(s) | 2549, 2564, 3163, 3264 |
| AfaI | GTAC | 5 cut(s) | 846, 1078, 1585, 3245, 3254 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1154, 1311, 2027, 2957, 3031 |
| AflIII | ACRYGT | 2 cut(s) | 1564, 1819 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1182 |
| AhlI | ACTAGT | 1 cut(s) | 995 |
| AjnI | CCWGG | 8 cut(s) | 45, 211, 879, 1200, 1712, 2026, 3050, 3115 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1123, 1155 |
| AleI | CACNNNNGTG | 1 cut(s) | 1032 |
| Alw21I | GWGCWC | 6 cut(s) | 76, 661, 1907, 1974, 3204, 3319 |
| Alw26I | GTCTC | 5 cut(s) | 202, 883, 1260, 1449, 2398 |
| Alw44I | GTGCAC | 1 cut(s) | 1970 |
| AlwI | GGATC | 5 cut(s) | 628, 2045, 2858, 2871, 3042 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3287 |
| Ama87I | CYCGRG | 2 cut(s) | 790, 2398 |
| Aor13HI | TCCGGA | 1 cut(s) | 3014 |
| AoxI | GGCC | 6 cut(s) | 352, 418, 815, 1197, 1759, 2842 |
| ApaI | GGGCCC | 1 cut(s) | 2846 |
| ApaLI | GTGCAC | 1 cut(s) | 1970 |
| ApoI | RAATTY | 4 cut(s) | 559, 1137, 2773, 3055 |
| AseI | ATTAAT | 1 cut(s) | 365 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1223 |
| AspA2I | CCTAGG | 1 cut(s) | 812 |
| AspLEI | GCGC | 2 cut(s) | 688, 3177 |
| AspS9I | GGNCC | 9 cut(s) | 482, 1145, 1184, 1198, 1759, 2842, 2843, 3017, 3222 |
| AsuC2I | CCSGG | 3 cut(s) | 22, 1468, 2841 |
| AsuHPI | GGTGA | 8 cut(s) | 182, 740, 908, 926, 1436, 2141, 2382, 3315 |
| AvaI | CYCGRG | 2 cut(s) | 790, 2398 |
| AvaII | GGWCC | 5 cut(s) | 482, 1145, 1184, 3017, 3222 |
| AvrII | CCTAGG | 1 cut(s) | 812 |
| BaeGI | GKGCMC | 3 cut(s) | 1533, 1974, 2846 |
| BamHI | GGATCC | 1 cut(s) | 2863 |
| BanII | GRGCYC | 3 cut(s) | 791, 2846, 3319 |
| BauI | CACGAG | 2 cut(s) | 486, 886 |
| BbsI | GAAGAC | 3 cut(s) | 1650, 1859, 2169 |
| Bbv12I | GWGCWC | 6 cut(s) | 76, 661, 1907, 1974, 3204, 3319 |
| BceAI | ACGGC | 2 cut(s) | 212, 1212 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2882, 2916 |
| BciT130I | CCWGG | 8 cut(s) | 47, 213, 881, 1202, 1714, 2028, 3052, 3117 |
| BciVI | GTATCC | 2 cut(s) | 1119, 2209 |
| BcnI | CCSGG | 3 cut(s) | 22, 1468, 2841 |
| BcoDI | GTCTC | 5 cut(s) | 202, 883, 1260, 1449, 2398 |
| BcuI | ACTAGT | 1 cut(s) | 995 |
| BfaI | CTAG | 9 cut(s) | 462, 707, 813, 974, 996, 1386, 2015, 2939, 3156 |
| BfmI | CTRYAG | 1 cut(s) | 2622 |
| BfuAI | ACCTGC | 2 cut(s) | 2898, 3334 |
| BfuI | GTATCC | 2 cut(s) | 1119, 2209 |
| BglII | AGATCT | 4 cut(s) | 7, 507, 2381, 3160 |
| BlnI | CCTAGG | 1 cut(s) | 812 |
| BlpI | GCTNAGC | 2 cut(s) | 1890, 3292 |
| BmcAI | AGTACT | 1 cut(s) | 1585 |
| Bme18I | GGWCC | 5 cut(s) | 482, 1145, 1184, 3017, 3222 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1182 |
| BmeT110I | CYCGRG | 2 cut(s) | 790, 2398 |
| BmgT120I | GGNCC | 9 cut(s) | 482, 1145, 1184, 1198, 1759, 2842, 2843, 3017, 3222 |
| BmiI | GGNNCC | 3 cut(s) | 2721, 2844, 2865 |
| BmsI | GCATC | 4 cut(s) | 599, 622, 2734, 3338 |
| BpiI | GAAGAC | 3 cut(s) | 1650, 1859, 2169 |
| BpmI | CTGGAG | 5 cut(s) | 486, 945, 1677, 2388, 2415 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1890, 3292 |
| BpuEI | CTTGAG | 5 cut(s) | 184, 1172, 2259, 2669, 2843 |
| BpuMI | CCSGG | 3 cut(s) | 22, 1468, 2841 |
| BsaAI | YACGTR | 3 cut(s) | 721, 1065, 3302 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1437, 2386 |
| BsaI | GGTCTC | 1 cut(s) | 2398 |
| BsaJI | CCNNGG | 9 cut(s) | 211, 812, 879, 1187, 1200, 1762, 2027, 2805, 3262 |
| BsaWI | WCCGGW | 2 cut(s) | 565, 3014 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1154, 1311, 2027, 2957, 3031 |
| Bse1I | ACTGG | 2 cut(s) | 2432, 2867 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1437, 2386 |
| BseAI | TCCGGA | 1 cut(s) | 3014 |
| BseBI | CCWGG | 8 cut(s) | 47, 213, 881, 1202, 1714, 2028, 3052, 3117 |
| BseDI | CCNNGG | 9 cut(s) | 211, 812, 879, 1187, 1200, 1762, 2027, 2805, 3262 |
| BseGI | GGATG | 8 cut(s) | 410, 697, 847, 961, 1709, 2308, 2931, 3154 |
| BseJI | GATNNNNATC | 2 cut(s) | 1437, 2386 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1154, 1311, 2027, 2957, 3031 |
| BseMII | CTCAG | 3 cut(s) | 564, 1881, 3306 |
| BseNI | ACTGG | 2 cut(s) | 2432, 2867 |
| BseRI | GAGGAG | 3 cut(s) | 2406, 2416, 2973 |
| BseSI | GKGCMC | 3 cut(s) | 1533, 1974, 2846 |
| BseYI | CCCAGC | 4 cut(s) | 662, 947, 1049, 1088 |
| BsgI | GTGCAG | 1 cut(s) | 3282 |
| BshFI | GGCC | 6 cut(s) | 354, 420, 817, 1199, 1761, 2844 |
| BsiHKAI | GWGCWC | 6 cut(s) | 76, 661, 1907, 1974, 3204, 3319 |
| BsiHKCI | CYCGRG | 2 cut(s) | 790, 2398 |
| BsiSI | CCGG | 6 cut(s) | 21, 566, 689, 1468, 2840, 3015 |
| BslFI | GGGAC | 3 cut(s) | 194, 455, 1170 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1154, 1311, 2027, 2957, 3031 |
| BsmAI | GTCTC | 5 cut(s) | 202, 883, 1260, 1449, 2398 |
| BsmBI | CGTCTC | 1 cut(s) | 202 |
| BsmFI | GGGAC | 3 cut(s) | 194, 455, 1170 |
| BsmI | GAATGC | 3 cut(s) | 31, 2730, 2761 |
| BsnI | GGCC | 6 cut(s) | 354, 420, 817, 1199, 1761, 2844 |
| Bso31I | GGTCTC | 1 cut(s) | 2398 |
| BsoBI | CYCGRG | 2 cut(s) | 790, 2398 |
| Bsp120I | GGGCCC | 1 cut(s) | 2842 |
| Bsp1286I | GDGCHC | 9 cut(s) | 76, 661, 791, 1533, 1907, 1974, 2846, 3204, 3319 |
| Bsp13I | TCCGGA | 1 cut(s) | 3014 |
| Bsp1407I | TGTACA | 1 cut(s) | 844 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1890, 3292 |
| Bsp19I | CCATGG | 2 cut(s) | 1187, 1762 |
| BspACI | CCGC | 8 cut(s) | 1010, 1527, 2266, 2271, 2332, 2676, 2696, 3145 |
| BspANI | GGCC | 6 cut(s) | 354, 420, 817, 1199, 1761, 2844 |
| BspCNI | CTCAG | 3 cut(s) | 565, 1882, 3305 |
| BspEI | TCCGGA | 1 cut(s) | 3014 |
| BspLI | GGNNCC | 3 cut(s) | 2721, 2844, 2865 |
| BspMAI | CTGCAG | 1 cut(s) | 2626 |
| BspMI | ACCTGC | 2 cut(s) | 2898, 3334 |
| BspPI | GGATC | 5 cut(s) | 628, 2045, 2858, 2871, 3042 |
| BspQI | GCTCTTC | 1 cut(s) | 1912 |
| BspTNI | GGTCTC | 1 cut(s) | 2398 |
| BsrBI | CCGCTC | 2 cut(s) | 2268, 2273 |
| BsrGI | TGTACA | 1 cut(s) | 844 |
| BsrI | ACTGG | 2 cut(s) | 2432, 2867 |
| BssECI | CCNNGG | 9 cut(s) | 211, 812, 879, 1187, 1200, 1762, 2027, 2805, 3262 |
| BssNAI | GTATAC | 1 cut(s) | 718 |
| BssSI | CACGAG | 2 cut(s) | 486, 886 |
| BssT1I | CCWWGG | 4 cut(s) | 812, 1187, 1762, 2805 |
| Bst1107I | GTATAC | 1 cut(s) | 718 |
| Bst2BI | CACGAG | 2 cut(s) | 486, 886 |
| Bst2UI | CCWGG | 8 cut(s) | 47, 213, 881, 1202, 1714, 2028, 3052, 3117 |
| Bst4CI | ACNGT | 8 cut(s) | 35, 698, 1535, 1543, 1588, 1902, 2341, 3085 |
| Bst6I | CTCTTC | 2 cut(s) | 1229, 1912 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 56, 2621 |
| BstAUI | TGTACA | 1 cut(s) | 844 |
| BstBAI | YACGTR | 3 cut(s) | 721, 1065, 3302 |
| BstC8I | GCNNGC | 5 cut(s) | 352, 873, 987, 1525, 1529 |
| BstDEI | CTNAG | 6 cut(s) | 108, 573, 1255, 1890, 3292, 3342 |
| BstDSI | CCRYGG | 3 cut(s) | 1187, 1762, 3262 |
| BstF5I | GGATG | 8 cut(s) | 410, 697, 847, 961, 1709, 2308, 2931, 3154 |
| BstHHI | GCGC | 2 cut(s) | 688, 3177 |
| BstMAI | GTCTC | 5 cut(s) | 202, 883, 1260, 1449, 2398 |
| BstNI | CCWGG | 8 cut(s) | 47, 213, 881, 1202, 1714, 2028, 3052, 3117 |
| BstNSI | RCATGY | 6 cut(s) | 587, 875, 1017, 1338, 1568, 1823 |
| BstSFI | CTRYAG | 1 cut(s) | 2622 |
| BstSLI | GKGCMC | 3 cut(s) | 1533, 1974, 2846 |
| BstSNI | TACGTA | 1 cut(s) | 721 |
| BstV2I | GAAGAC | 3 cut(s) | 1650, 1859, 2169 |
| BstX2I | RGATCY | 7 cut(s) | 7, 507, 620, 2381, 2863, 3047, 3160 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2926 |
| BstYI | RGATCY | 7 cut(s) | 7, 507, 620, 2381, 2863, 3047, 3160 |
| BstZ17I | GTATAC | 1 cut(s) | 718 |
| BsuI | GTATCC | 2 cut(s) | 1119, 2209 |
| BsuRI | GGCC | 6 cut(s) | 354, 420, 817, 1199, 1761, 2844 |
| BtgI | CCRYGG | 3 cut(s) | 1187, 1762, 3262 |
| BtgZI | GCGATG | 2 cut(s) | 726, 1251 |
| BtsCI | GGATG | 8 cut(s) | 410, 697, 847, 961, 1709, 2308, 2931, 3154 |
| BtsI | GCAGTG | 1 cut(s) | 1972 |
| BtsIMutI | CAGTG | 3 cut(s) | 1107, 1907, 1972 |
| BveI | ACCTGC | 2 cut(s) | 2898, 3334 |
| Cac8I | GCNNGC | 5 cut(s) | 352, 873, 987, 1525, 1529 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3287 |
| CfoI | GCGC | 2 cut(s) | 688, 3177 |
| Cfr13I | GGNCC | 9 cut(s) | 482, 1145, 1184, 1198, 1759, 2842, 2843, 3017, 3222 |
| CseI | GACGC | 1 cut(s) | 236 |
| Csp6I | GTAC | 5 cut(s) | 845, 1077, 1584, 3244, 3253 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3244, 3279 |
| CviQI | GTAC | 5 cut(s) | 845, 1077, 1584, 3244, 3253 |
| DdeI | CTNAG | 6 cut(s) | 108, 573, 1255, 1890, 3292, 3342 |
| DraI | TTTAAA | 2 cut(s) | 1809, 2484 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1182 |
| Eam1104I | CTCTTC | 2 cut(s) | 1229, 1912 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1182 |
| EarI | CTCTTC | 2 cut(s) | 1229, 1912 |
| EciI | GGCGGA | 1 cut(s) | 2711 |
| Ecl136II | GAGCTC | 1 cut(s) | 3317 |
| Eco105I | TACGTA | 1 cut(s) | 721 |
| Eco130I | CCWWGG | 4 cut(s) | 812, 1187, 1762, 2805 |
| Eco147I | AGGCCT | 2 cut(s) | 354, 420 |
| Eco24I | GRGCYC | 3 cut(s) | 791, 2846, 3319 |
| Eco31I | GGTCTC | 1 cut(s) | 2398 |
| Eco32I | GATATC | 1 cut(s) | 242 |
| Eco47I | GGWCC | 5 cut(s) | 482, 1145, 1184, 3017, 3222 |
| Eco53kI | GAGCTC | 1 cut(s) | 3317 |
| Eco57I | CTGAAG | 4 cut(s) | 2549, 2564, 3163, 3264 |
| Eco88I | CYCGRG | 2 cut(s) | 790, 2398 |
| EcoICRI | GAGCTC | 1 cut(s) | 3317 |
| EcoRI | GAATTC | 1 cut(s) | 3055 |
| EcoRII | CCWGG | 8 cut(s) | 45, 211, 879, 1200, 1712, 2026, 3050, 3115 |
| EcoRV | GATATC | 1 cut(s) | 242 |
| EcoT14I | CCWWGG | 4 cut(s) | 812, 1187, 1762, 2805 |
| EcoT22I | ATGCAT | 1 cut(s) | 637 |
| EcoT38I | GRGCYC | 3 cut(s) | 791, 2846, 3319 |
| ErhI | CCWWGG | 4 cut(s) | 812, 1187, 1762, 2805 |
| Esp3I | CGTCTC | 1 cut(s) | 202 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1455, 1487 |
| FaqI | GGGAC | 3 cut(s) | 194, 455, 1170 |
| FauI | CCCGC | 2 cut(s) | 1520, 3138 |
| FblI | GTMKAC | 2 cut(s) | 717, 1915 |
| FokI | GGATG | 8 cut(s) | 417, 704, 854, 968, 1696, 2315, 2938, 3161 |
| FriOI | GRGCYC | 3 cut(s) | 791, 2846, 3319 |
| FspBI | CTAG | 9 cut(s) | 462, 707, 813, 974, 996, 1386, 2015, 2939, 3156 |
| GlaI | GCGC | 2 cut(s) | 687, 3176 |
| GsaI | CCCAGC | 4 cut(s) | 666, 951, 1053, 1092 |
| GsuI | CTGGAG | 5 cut(s) | 486, 945, 1677, 2388, 2415 |
| HaeIII | GGCC | 6 cut(s) | 354, 420, 817, 1199, 1761, 2844 |
| HapII | CCGG | 6 cut(s) | 21, 566, 689, 1468, 2840, 3015 |
| HgaI | GACGC | 1 cut(s) | 236 |
| HhaI | GCGC | 2 cut(s) | 688, 3177 |
| Hin6I | GCGC | 2 cut(s) | 686, 3175 |
| HinP1I | GCGC | 2 cut(s) | 686, 3175 |
| HincII | GTYRAC | 1 cut(s) | 2316 |
| HindII | GTYRAC | 1 cut(s) | 2316 |
| HindIII | AAGCTT | 1 cut(s) | 1803 |
| HpaII | CCGG | 6 cut(s) | 21, 566, 689, 1468, 2840, 3015 |
| HphI | GGTGA | 8 cut(s) | 182, 740, 908, 926, 1436, 2141, 2382, 3315 |
| HpyAV | CCTTC | 4 cut(s) | 61, 946, 2097, 2292 |
| HpyCH4III | ACNGT | 8 cut(s) | 35, 698, 1535, 1543, 1588, 1902, 2341, 3085 |
| HpyCH4IV | ACGT | 4 cut(s) | 720, 1064, 2527, 3301 |
| HpyF3I | CTNAG | 6 cut(s) | 108, 573, 1255, 1890, 3292, 3342 |
| HpySE526I | ACGT | 4 cut(s) | 720, 1064, 2527, 3301 |
| HspAI | GCGC | 2 cut(s) | 686, 3175 |
| Kpn2I | TCCGGA | 1 cut(s) | 3014 |
| LguI | GCTCTTC | 1 cut(s) | 1912 |
| LmnI | GCTCC | 8 cut(s) | 23, 664, 2023, 2273, 2719, 2905, 2960, 3314 |
| LweI | GCATC | 4 cut(s) | 599, 622, 2734, 3338 |
| MaeI | CTAG | 9 cut(s) | 462, 707, 813, 974, 996, 1386, 2015, 2939, 3156 |
| MaeII | ACGT | 4 cut(s) | 720, 1064, 2527, 3301 |
| MaeIII | GTNAC | 8 cut(s) | 35, 579, 883, 1039, 1174, 1204, 1896, 2523 |
| MbiI | CCGCTC | 2 cut(s) | 2268, 2273 |
| MfeI | CAATTG | 2 cut(s) | 1948, 2210 |
| MflI | RGATCY | 7 cut(s) | 7, 507, 620, 2381, 2863, 3047, 3160 |
| MhlI | GDGCHC | 9 cut(s) | 76, 661, 791, 1533, 1907, 1974, 2846, 3204, 3319 |
| MlyI | GAGTC | 5 cut(s) | 833, 1152, 2422, 2810, 2842 |
| MmeI | TCCRAC | 2 cut(s) | 2127, 2851 |
| Mph1103I | ATGCAT | 1 cut(s) | 637 |
| MroI | TCCGGA | 1 cut(s) | 3014 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1223 |
| MseI | TTAA | 8 cut(s) | 365, 1473, 1538, 1706, 1808, 2297, 2483, 2547 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1032, 1767 |
| MspA1I | CMGCKG | 1 cut(s) | 3296 |
| MspI | CCGG | 6 cut(s) | 21, 566, 689, 1468, 2840, 3015 |
| MunI | CAATTG | 2 cut(s) | 1948, 2210 |
| Mva1269I | GAATGC | 3 cut(s) | 31, 2730, 2761 |
| MvaI | CCWGG | 8 cut(s) | 47, 213, 881, 1202, 1714, 2028, 3052, 3117 |
| NciI | CCSGG | 3 cut(s) | 22, 1468, 2841 |
| NcoI | CCATGG | 2 cut(s) | 1187, 1762 |
| NlaIV | GGNNCC | 3 cut(s) | 2721, 2844, 2865 |
| NmuCI | GTSAC | 5 cut(s) | 35, 579, 883, 1174, 1896 |
| NsiI | ATGCAT | 1 cut(s) | 637 |
| NspI | RCATGY | 6 cut(s) | 587, 875, 1017, 1338, 1568, 1823 |
| OliI | CACNNNNGTG | 1 cut(s) | 1032 |
| PaeI | GCATGC | 1 cut(s) | 875 |
| PaeR7I | CTCGAG | 1 cut(s) | 2398 |
| PaqCI | CACCTGC | 1 cut(s) | 3334 |
| PceI | AGGCCT | 2 cut(s) | 354, 420 |
| PciI | ACATGT | 2 cut(s) | 1564, 1819 |
| PciSI | GCTCTTC | 1 cut(s) | 1912 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 244 |
| PctI | GAATGC | 3 cut(s) | 31, 2730, 2761 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1223 |
| PfoI | TCCNGGA | 3 cut(s) | 20, 1712, 3050 |
| PleI | GAGTC | 5 cut(s) | 832, 1152, 2422, 2810, 2842 |
| PpsI | GAGTC | 5 cut(s) | 832, 1152, 2422, 2810, 2842 |
| Ppu21I | YACGTR | 3 cut(s) | 721, 1065, 3302 |
| PscI | ACATGT | 2 cut(s) | 1564, 1819 |
| PshBI | ATTAAT | 1 cut(s) | 365 |
| PsiI | TTATAA | 1 cut(s) | 2663 |
| Psp124BI | GAGCTC | 1 cut(s) | 3319 |
| Psp6I | CCWGG | 8 cut(s) | 45, 211, 879, 1200, 1712, 2026, 3050, 3115 |
| PspFI | CCCAGC | 4 cut(s) | 662, 947, 1049, 1088 |
| PspGI | CCWGG | 8 cut(s) | 45, 211, 879, 1200, 1712, 2026, 3050, 3115 |
| PspN4I | GGNNCC | 3 cut(s) | 2721, 2844, 2865 |
| PspOMI | GGGCCC | 1 cut(s) | 2842 |
| PspPI | GGNCC | 9 cut(s) | 482, 1145, 1184, 1198, 1759, 2842, 2843, 3017, 3222 |
| PstI | CTGCAG | 1 cut(s) | 2626 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3287 |
| PsuI | RGATCY | 7 cut(s) | 7, 507, 620, 2381, 2863, 3047, 3160 |
| PvuII | CAGCTG | 1 cut(s) | 3296 |
| RsaI | GTAC | 5 cut(s) | 846, 1078, 1585, 3245, 3254 |
| RsaNI | GTAC | 5 cut(s) | 845, 1077, 1584, 3244, 3253 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1032, 1767 |
| SacI | GAGCTC | 1 cut(s) | 3319 |
| SapI | GCTCTTC | 1 cut(s) | 1912 |
| SaqAI | TTAA | 8 cut(s) | 365, 1473, 1538, 1706, 1808, 2297, 2483, 2547 |
| Sau96I | GGNCC | 9 cut(s) | 482, 1145, 1184, 1198, 1759, 2842, 2843, 3017, 3222 |
| ScaI | AGTACT | 1 cut(s) | 1585 |
| SchI | GAGTC | 5 cut(s) | 833, 1152, 2422, 2810, 2842 |
| SduI | GDGCHC | 9 cut(s) | 76, 661, 791, 1533, 1907, 1974, 2846, 3204, 3319 |
| SfaNI | GCATC | 4 cut(s) | 599, 622, 2734, 3338 |
| SfcI | CTRYAG | 1 cut(s) | 2622 |
| Sfr274I | CTCGAG | 1 cut(s) | 2398 |
| SinI | GGWCC | 5 cut(s) | 482, 1145, 1184, 3017, 3222 |
| SlaI | CTCGAG | 1 cut(s) | 2398 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1032, 1767 |
| SmlI | CTYRAG | 6 cut(s) | 199, 1151, 2274, 2398, 2684, 2858 |
| SmoI | CTYRAG | 6 cut(s) | 199, 1151, 2274, 2398, 2684, 2858 |
| SnaBI | TACGTA | 1 cut(s) | 721 |
| SpeI | ACTAGT | 1 cut(s) | 995 |
| SphI | GCATGC | 1 cut(s) | 875 |
| SseBI | AGGCCT | 2 cut(s) | 354, 420 |
| SsiI | CCGC | 8 cut(s) | 1010, 1527, 2266, 2271, 2332, 2676, 2696, 3145 |
| SspMI | CTAG | 9 cut(s) | 462, 707, 813, 974, 996, 1386, 2015, 2939, 3156 |
| SstI | GAGCTC | 1 cut(s) | 3319 |
| StuI | AGGCCT | 2 cut(s) | 354, 420 |
| StyI | CCWWGG | 4 cut(s) | 812, 1187, 1762, 2805 |
| TaaI | ACNGT | 8 cut(s) | 35, 698, 1535, 1543, 1588, 1902, 2341, 3085 |
| TaiI | ACGT | 4 cut(s) | 723, 1067, 2530, 3304 |
| TaqI | TCGA | 7 cut(s) | 42, 640, 2041, 2378, 2399, 2777, 2814 |
| TatI | WGTACW | 3 cut(s) | 844, 1583, 3252 |
| TauI | GCSGC | 2 cut(s) | 1013, 2335 |
| Tru1I | TTAA | 8 cut(s) | 365, 1473, 1538, 1706, 1808, 2297, 2483, 2547 |
| Tru9I | TTAA | 8 cut(s) | 365, 1473, 1538, 1706, 1808, 2297, 2483, 2547 |
| TscAI | CASTG | 3 cut(s) | 1114, 1907, 1979 |
| TseFI | GTSAC | 5 cut(s) | 35, 579, 883, 1174, 1896 |
| Tsp45I | GTSAC | 5 cut(s) | 35, 579, 883, 1174, 1896 |
| TspDTI | ATGAA | 7 cut(s) | 1389, 1734, 2274, 2445, 2511, 2577, 2895 |
| TspGWI | ACGGA | 5 cut(s) | 184, 306, 1467, 3251, 3327 |
| TspRI | CASTG | 3 cut(s) | 1114, 1907, 1979 |
| VneI | GTGCAC | 1 cut(s) | 1970 |
| VpaK11BI | GGWCC | 5 cut(s) | 482, 1145, 1184, 3017, 3222 |
| VspI | ATTAAT | 1 cut(s) | 365 |
| XapI | RAATTY | 4 cut(s) | 559, 1137, 2773, 3055 |
| XceI | RCATGY | 6 cut(s) | 587, 875, 1017, 1338, 1568, 1823 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 835, 857 |
| XhoI | CTCGAG | 1 cut(s) | 2398 |
| XmaJI | CCTAGG | 1 cut(s) | 812 |
| XmiI | GTMKAC | 2 cut(s) | 717, 1915 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1223 |
| XspI | CTAG | 9 cut(s) | 462, 707, 813, 974, 996, 1386, 2015, 2939, 3156 |
| ZrmI | AGTACT | 1 cut(s) | 1585 |
| Zsp2I | ATGCAT | 1 cut(s) | 637 |