Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009215

Physical Location & Seq

Genomic Coordinates Forward (+)

1461200 .. 1464374

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGTTTACATGGGGTGAAGAATCTGGAGGACGACTGGGGCATGGTGCTGGGAAGGATGTTGTTCAACCTCATCTAGTTGAATCTCTGGCAGCTACTAGTGTTGATTTTGCAGCATGTGGAGAATTTCATACATGTGCTGTTACAATGGCTGGGGAACTTTATACGTGGGGAGATGGTACGCATAATGCTGGGCTACTTGGTCATGGCACTGATGTCAGCCATTGGATACCAAAGAGAATTTCGGGTCCTCTTGAGGGACTTCAAGTTGCTTCTGTAACTTGTGGTCCATGGCATACAGCCTTGATAACATCAACGGGGAAACTCTTCACATTCGGCGACGGCACATTTGGCGTCTTAGGCCATGGAGACAGAGAAAATGTTCCTTATCCGAGAGAAATAGAATCCCTATCAGGGTTGAGGACAATATCTGTTGCATGTGGGGTGTGGCACACTGCTGCTGTGGTGGAGGTTATTGCAACACAATCTAGTGCAAGTATTTCATCAGGTAAGTTGTTTACTTGGGGTGATGGAGATAAAAATCGTCTCGGGCATGGGGACAAGGAAGCCCGACTTAAACCGACATGTGTTCCAGCCCTTATTGACTACAATTTTCACAAAATTGCTTGCGGGCACAGTTTAACAGTTGGCTTGACGACTTCAGGACATGTTTTTACAATGGGCAGTACTGTTTATGGTCAGCTTGGGAATCCCAATTCTGATGGAAAGCTACCTTGCTTGGTAGAAGACAAACTCGGTGGGGATTGTATTGAAGAAATTGCATGTGGTGCTTATCATGTAGCAGTATTAACATCCAGGAATGAAGTTTATACATGGGGAAAGGGAGCTAATGGGAGATTAGGCCATGGAGATGTTGAAGATCGGAAAACACCGACTTTGGTTGAAGCTTTAAAGGATAGACATGTGAAATATATTGGTTGCGGTTCAGAATATACAGCAGCTATTTGTCTTCACAAATGGGTATCTGGTGCTGAGCAGTCACAGTGCTCTGCTTGTAGACAGGCTTTTGGGTTCACAAGGAAGAGGCACAACTGCTATAATTGTGGACTTGTGCACTGCCACTCATGCAGTTCAAAAAAAGCAACAAGGGCAGCTCTGGCTCCTAATCCTGGAAAACCATATCGAGTTTGTGATCCTTGTTATATGAAATTGAATAAGGTGTCAGAAACTGGTAGTAATAACAGAAGGAATGCTATACCTCGGTTGTCAGGTGAGAACAAGGACAGGTTGGACAAGGCTGACATAAAATTATACAAGACTGCTGTACCATCGAATATGGATTTGATAAAGCAATTAGATACTAAAGCAGCCAAGCAGGGAAAGAAAGCTGACACATTTTCACTTGTCCGCTCTGCTCAAGCACCTTCATTGTTGCAATTAAAGGAGGTTGTTATGTCAACGGCTGTTGATCTGCGACGAACAGTTCCCAAACCAGTTCTTACACCATCTGGAGCAAGTTCAAGGTCCGTGTCCCCTTTCTCGAGGAGACCAAGCCCTCCTCGTTTTGCAACTCCTGTTCCTACTACATCAGGACTTTCCTTCTCAAAAAGTATTGCTGATAGTCTGAAGAAAACAAATGAACTTTTGAATCAGGAAGTGCTAAAATTACGTTCACGGGGGTGGTTGAGAGCCTTAGACAGAGATGTGATCGATCAAGAATTAGAGCTTCAGAATTCTTCAAAGAAAGTACAAGAAGCAATGGCATTGGCCGCGGACGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTAACCGCACAGCTCAAGGATTTGGCAGAACGGCTTCCACCTGGGGTTTATGATTCAGAGACCATAAAGCAGGCATTCCTGCCAAATGGTTTGGAGCCAAATGGCATTAACTATCCAGATGCTAATGAAGAGCAGCATTCAAGATCAACTTCCATCAGCAGTTCTTACTTGATCTCCTCCTTGGGAATCGACTCTGCTACAACAAATGGAAATCACGGCCCGACTCATTCACCCAAGGGTCAACTTGGAACAAATGAAACAATCATGCAGCACAGTCGGGACCCTCTGACCTCCAATGGGATGATAAACTCCCCAGATAAACTACCCAATGGCGGTGGATCATTTCAGACAGTTAGTAGTAGTGTGTCTGAAACTGTTGATGGCCGGGAATCCAGGCCTTTTCAAGATGGGGAGAATGGTGCGAGATCCATGAATTCTCCATCGCCTGCTAATGGTAATACAGTTGAGGCAGAATGGATTGAACAATATGAGCCTGGTGTTTATATAACTCTTGTGGCTCTGCGGGATGGAACTAGAGATCTCAAACGAGTGCGCTTCAGCCGAAAGAGATTTGGAGAGCACCAAGCACAGATCTGGTGGTCGGAGAATCGTGAGAAAGTGTATGAGAAGTACAATGTGCGTGGGTCAGACAAATCTTCGGTTGCTGGCTCAGCTGCACGTAGATCAGACGGAGCTCTCTCACCTGCCTCATCTCAACAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005086 GO:0005088 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0008150 GO:0008289 GO:0012505 GO:0016020 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0031267 GO:0035091 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0070300 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

834

Amino Acids

89.84

Weight (kDa)

8.72

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76950 AT5G42140 AT5G42140
fragaria_vesca	FvH4_2g14280 FvH4_2g14280 FvH4_2g14280 FvH4_2g14280
malus_domestica	MD05G1020200.v1.1 MD10G1021300.v1.1
prunus_persica	Prupe.8G024300_v2.0.a1
pyrus_communis	pycom05g01180 pycom10g01440
rosa_chinensis	RchiOBHm_Chr6g0276571
rosa_laevigata	RLG00000013389
rosa_multiflora	Rmu_ssc0000059.1_g000010
rosa_roxburghii	Rroxscaffold_7G00192170
rosa_rugosa	Rorug06G0101800
rosa_samantha	Rh6AG212600 Rh6BG217500 Rh6CG219800 Rh6DG209400
rosa_wichuraiana	Rw6G018580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1769
AarI	CACCTGC	1 cut(s)	2488
Acc36I	ACCTGC	1 cut(s)	2488
AccBSI	CCGCTC	1 cut(s)	1368
AccI	GTMKAC	1 cut(s)	1015
AccII	CGCG	1 cut(s)	1730
AciI	CCGC	8 cut(s)	627, 939, 1366, 1728, 1730, 1782, 2109, 2299
AclWI	GGATC	3 cut(s)	1145, 2122, 2196
AcoI	YGGCCR	2 cut(s)	1725, 2158
AcsI	RAATTY	4 cut(s)	122, 237, 1690, 2209
AcuI	CTGAAG	4 cut(s)	642, 1604, 1670, 2317
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	5 cut(s)	178, 685, 1284, 1707, 2408
AfiI	CCNNNNNNNGG	6 cut(s)	254, 411, 1127, 2073, 2108, 2228
AflIII	ACRYGT	4 cut(s)	131, 581, 664, 919
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	5 cut(s)	812, 1126, 1816, 2168, 2269
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AleI	CACNNNNGTG	1 cut(s)	1636
Alw21I	GWGCWC	4 cut(s)	1007, 1074, 2358, 2473
Alw26I	GTCTC	4 cut(s)	360, 548, 1498, 1829
Alw44I	GTGCAC	1 cut(s)	1070
AlwI	GGATC	3 cut(s)	1145, 2122, 2196
AlwNI	CAGNNNCTG	1 cut(s)	1187
Ama87I	CYCGRG	2 cut(s)	545, 1498
AoxI	GGCC	6 cut(s)	358, 859, 1725, 1993, 2158, 2171
ApaLI	GTGCAC	1 cut(s)	1070
ApoI	RAATTY	4 cut(s)	122, 237, 1690, 2209
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
Asp700I	GAANNNNTTC	3 cut(s)	323, 378, 1809
AspLEI	GCGC	1 cut(s)	2331
AspS9I	GGNCC	5 cut(s)	245, 284, 1482, 1994, 2056
AsuC2I	CCSGG	1 cut(s)	2162
AsuHPI	GGTGA	5 cut(s)	26, 536, 1241, 1998, 2469
AvaI	CYCGRG	2 cut(s)	545, 1498
AvaII	GGWCC	4 cut(s)	245, 284, 1482, 2056
BaeGI	GKGCMC	2 cut(s)	633, 1074
BaeI	ACNNNNGTAYC	2 cut(s)	1266, 1299
BanII	GRGCYC	1 cut(s)	2473
BbsI	GAAGAC	2 cut(s)	750, 959
Bbv12I	GWGCWC	4 cut(s)	1007, 1074, 2358, 2473
BceAI	ACGGC	4 cut(s)	355, 1434, 1823, 2008
BcgI	CGANNNNNNTGC	2 cut(s)	2033, 2067
BciT130I	CCWGG	5 cut(s)	814, 1128, 1818, 2170, 2271
BciVI	GTATCC	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	2162
BcoDI	GTCTC	4 cut(s)	360, 548, 1498, 1829
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	4 cut(s)	74, 96, 486, 2310
BfuAI	ACCTGC	1 cut(s)	2488
BfuI	GTATCC	1 cut(s)	219
BglII	AGATCT	2 cut(s)	2314, 2367
BlpI	GCTNAGC	2 cut(s)	990, 2446
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	6 cut(s)	814, 1128, 1818, 2162, 2170, 2271
Bme18I	GGWCC	4 cut(s)	245, 284, 1482, 2056
BmeT110I	CYCGRG	2 cut(s)	545, 1498
BmgT120I	GGNCC	5 cut(s)	245, 284, 1482, 1994, 2056
BmiI	GGNNCC	5 cut(s)	246, 1119, 1872, 2057, 2058
BmrFI	CCNGG	6 cut(s)	814, 1128, 1818, 2162, 2170, 2271
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	1885
BmuI	ACTGGG	1 cut(s)	44
BpiI	GAAGAC	2 cut(s)	750, 959
BpmI	CTGGAG	2 cut(s)	45, 1488
Bpu1102I	GCTNAGC	2 cut(s)	990, 2446
BpuEI	CTTGAG	3 cut(s)	272, 1359, 1775
BpuMI	CCSGG	1 cut(s)	2162
Bsa29I	ATCGAT	1 cut(s)	1668
BsaAI	YACGTR	2 cut(s)	165, 2456
BsaBI	GATNNNNATC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	351
BsaI	GGTCTC	2 cut(s)	1498, 1829
BsaJI	CCNNGG	8 cut(s)	287, 361, 862, 1217, 1728, 1817, 1956, 2010
BsaXI	ACNNNNNCTCC	2 cut(s)	1934, 1964
Bsc4I	CCNNNNNNNGG	6 cut(s)	254, 411, 1127, 2073, 2108, 2228
Bse1I	ACTGG	3 cut(s)	39, 1192, 1451
Bse3DI	GCAATG	1 cut(s)	1722
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	5 cut(s)	814, 1128, 1818, 2170, 2271
BseCI	ATCGAT	1 cut(s)	1668
BseDI	CCNNGG	8 cut(s)	287, 361, 862, 1217, 1728, 1817, 1956, 2010
BseGI	GGATG	4 cut(s)	61, 809, 2082, 2308
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	6 cut(s)	254, 411, 1127, 2073, 2108, 2228
BseMI	GCAATG	1 cut(s)	1722
BseMII	CTCAG	2 cut(s)	981, 2460
BseNI	ACTGG	3 cut(s)	39, 1192, 1451
BseRI	GAGGAG	3 cut(s)	1506, 1516, 1942
BseSI	GKGCMC	2 cut(s)	633, 1074
BseYI	CCCAGC	3 cut(s)	47, 149, 188
BsgI	GTGCAG	1 cut(s)	2436
Bsh1236I	CGCG	1 cut(s)	1730
BshFI	GGCC	6 cut(s)	360, 861, 1727, 1995, 2160, 2173
BshVI	ATCGAT	1 cut(s)	1668
BsiHKAI	GWGCWC	4 cut(s)	1007, 1074, 2358, 2473
BsiHKCI	CYCGRG	2 cut(s)	545, 1498
BsiSI	CCGG	1 cut(s)	2161
BslFI	GGGAC	4 cut(s)	270, 569, 1474, 2069
BslI	CCNNNNNNNGG	6 cut(s)	254, 411, 1127, 2073, 2108, 2228
BsmAI	GTCTC	4 cut(s)	360, 548, 1498, 1829
BsmBI	CGTCTC	1 cut(s)	548
BsmFI	GGGAC	4 cut(s)	270, 569, 1474, 2069
BsmI	GAATGC	3 cut(s)	1213, 1850, 1912
BsnI	GGCC	6 cut(s)	360, 861, 1727, 1995, 2160, 2173
Bso31I	GGTCTC	2 cut(s)	1498, 1829
BsoBI	CYCGRG	2 cut(s)	545, 1498
Bsp1286I	GDGCHC	5 cut(s)	633, 1007, 1074, 2358, 2473
Bsp1720I	GCTNAGC	2 cut(s)	990, 2446
Bsp19I	CCATGG	3 cut(s)	287, 361, 862
BspACI	CCGC	8 cut(s)	627, 939, 1366, 1728, 1730, 1782, 2109, 2299
BspANI	GGCC	6 cut(s)	360, 861, 1727, 1995, 2160, 2173
BspCNI	CTCAG	2 cut(s)	982, 2459
BspDI	ATCGAT	1 cut(s)	1668
BspFNI	CGCG	1 cut(s)	1730
BspLI	GGNNCC	5 cut(s)	246, 1119, 1872, 2057, 2058
BspMI	ACCTGC	1 cut(s)	2488
BspPI	GGATC	3 cut(s)	1145, 2122, 2196
BspQI	GCTCTTC	1 cut(s)	1899
BspTNI	GGTCTC	2 cut(s)	1498, 1829
BsrBI	CCGCTC	1 cut(s)	1368
BsrDI	GCAATG	1 cut(s)	1722
BsrI	ACTGG	3 cut(s)	39, 1192, 1451
BssECI	CCNNGG	8 cut(s)	287, 361, 862, 1217, 1728, 1817, 1956, 2010
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	5 cut(s)	287, 361, 862, 1956, 2010
Bst2UI	CCWGG	5 cut(s)	814, 1128, 1818, 2170, 2271
Bst4CI	ACNGT	9 cut(s)	635, 643, 688, 1002, 1441, 2051, 2128, 2152, 2239
Bst6I	CTCTTC	3 cut(s)	329, 1034, 1899
BstACI	GRCGYC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBAI	YACGTR	2 cut(s)	165, 2456
BstC8I	GCNNGC	5 cut(s)	625, 629, 1848, 2223, 2443
BstDEI	CTNAG	5 cut(s)	355, 990, 1651, 2446, 2499
BstDSI	CCRYGG	4 cut(s)	287, 361, 862, 1728
BstF5I	GGATG	4 cut(s)	61, 809, 2082, 2308
BstFNI	CGCG	1 cut(s)	1730
BstHHI	GCGC	1 cut(s)	2331
BstMAI	GTCTC	4 cut(s)	360, 548, 1498, 1829
BstMWI	GCNNNNNNNGC	8 cut(s)	348, 357, 785, 1083, 1106, 1115, 1727, 2447
BstNI	CCWGG	5 cut(s)	814, 1128, 1818, 2170, 2271
BstNSI	RCATGY	7 cut(s)	117, 135, 438, 585, 668, 783, 923
BstSCI	CCNGG	6 cut(s)	812, 1126, 1816, 2160, 2168, 2269
BstSLI	GKGCMC	2 cut(s)	633, 1074
BstUI	CGCG	1 cut(s)	1730
BstV2I	GAAGAC	2 cut(s)	750, 959
BstX2I	RGATCY	3 cut(s)	2201, 2314, 2367
BstYI	RGATCY	3 cut(s)	2201, 2314, 2367
Bsu15I	ATCGAT	1 cut(s)	1668
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	6 cut(s)	360, 861, 1727, 1995, 2160, 2173
BsuTUI	ATCGAT	1 cut(s)	1668
BtgI	CCRYGG	4 cut(s)	287, 361, 862, 1728
BtgZI	GCGATG	1 cut(s)	2202
BtsCI	GGATG	4 cut(s)	61, 809, 2082, 2308
BtsI	GCAGTG	2 cut(s)	450, 1072
BtsIMutI	CAGTG	4 cut(s)	207, 450, 1007, 1072
BveI	ACCTGC	1 cut(s)	2488
Cac8I	GCNNGC	5 cut(s)	625, 629, 1848, 2223, 2443
CaiI	CAGNNNCTG	1 cut(s)	1187
CfoI	GCGC	1 cut(s)	2331
Cfr13I	GGNCC	5 cut(s)	245, 284, 1482, 1994, 2056
Cfr42I	CCGCGG	1 cut(s)	1731
ClaI	ATCGAT	1 cut(s)	1668
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	5 cut(s)	177, 684, 1283, 1706, 2407
CspCI	CAANNNNNGTGG	6 cut(s)	736, 771, 2092, 2127, 2398, 2433
CviQI	GTAC	5 cut(s)	177, 684, 1283, 1706, 2407
DdeI	CTNAG	5 cut(s)	355, 990, 1651, 2446, 2499
DraI	TTTAAA	1 cut(s)	909
EaeI	YGGCCR	2 cut(s)	1725, 2158
Eam1104I	CTCTTC	3 cut(s)	329, 1034, 1899
EarI	CTCTTC	3 cut(s)	329, 1034, 1899
Ecl136II	GAGCTC	1 cut(s)	2471
Eco130I	CCWWGG	5 cut(s)	287, 361, 862, 1956, 2010
Eco147I	AGGCCT	1 cut(s)	2173
Eco24I	GRGCYC	1 cut(s)	2473
Eco31I	GGTCTC	2 cut(s)	1498, 1829
Eco47I	GGWCC	4 cut(s)	245, 284, 1482, 2056
Eco53kI	GAGCTC	1 cut(s)	2471
Eco57I	CTGAAG	4 cut(s)	642, 1604, 1670, 2317
Eco88I	CYCGRG	2 cut(s)	545, 1498
EcoICRI	GAGCTC	1 cut(s)	2471
EcoO109I	RGGNCCY	2 cut(s)	245, 2056
EcoRI	GAATTC	2 cut(s)	1690, 2209
EcoRII	CCWGG	5 cut(s)	812, 1126, 1816, 2168, 2269
EcoT14I	CCWWGG	5 cut(s)	287, 361, 862, 1956, 2010
EcoT38I	GRGCYC	1 cut(s)	2473
ErhI	CCWWGG	5 cut(s)	287, 361, 862, 1956, 2010
Esp3I	CGTCTC	1 cut(s)	548
FalI	AAGNNNNNCTT	4 cut(s)	555, 587, 1909, 1941
FaqI	GGGAC	4 cut(s)	270, 569, 1474, 2069
FauI	CCCGC	2 cut(s)	620, 2292
FblI	GTMKAC	1 cut(s)	1015
FokI	GGATG	4 cut(s)	68, 796, 2089, 2315
FriOI	GRGCYC	1 cut(s)	2473
FspBI	CTAG	4 cut(s)	74, 96, 486, 2310
GlaI	GCGC	1 cut(s)	2330
GsaI	CCCAGC	3 cut(s)	51, 153, 192
GsuI	CTGGAG	2 cut(s)	45, 1488
HaeIII	GGCC	6 cut(s)	360, 861, 1727, 1995, 2160, 2173
HapII	CCGG	1 cut(s)	2161
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	2331
Hin1I	GRCGYC	1 cut(s)	351
Hin6I	GCGC	1 cut(s)	2329
HinP1I	GCGC	1 cut(s)	2329
HincII	GTYRAC	2 cut(s)	1416, 2018
HindII	GTYRAC	2 cut(s)	1416, 2018
HindIII	AAGCTT	2 cut(s)	903, 2496
HpaII	CCGG	1 cut(s)	2161
HphI	GGTGA	5 cut(s)	26, 536, 1241, 1998, 2469
Hpy166II	GTNNAC	9 cut(s)	6, 516, 1016, 1032, 1064, 1072, 1416, 1631, 2018
Hpy8I	GTNNAC	9 cut(s)	6, 516, 1016, 1032, 1064, 1072, 1416, 1631, 2018
Hpy99I	CGWCG	2 cut(s)	341, 1437
HpyAV	CCTTC	4 cut(s)	46, 1197, 1392, 1567
HpyCH4III	ACNGT	9 cut(s)	635, 643, 688, 1002, 1441, 2051, 2128, 2152, 2239
HpyCH4IV	ACGT	3 cut(s)	164, 1627, 2455
HpyF10VI	GCNNNNNNNGC	8 cut(s)	348, 357, 785, 1083, 1106, 1115, 1727, 2447
HpyF3I	CTNAG	5 cut(s)	355, 990, 1651, 2446, 2499
HpySE526I	ACGT	3 cut(s)	164, 1627, 2455
Hsp92I	GRCGYC	1 cut(s)	351
HspAI	GCGC	1 cut(s)	2329
KflI	GGGWCCC	1 cut(s)	2056
KspI	CCGCGG	1 cut(s)	1731
LguI	GCTCTTC	1 cut(s)	1899
LmnI	GCTCC	5 cut(s)	842, 1123, 1469, 1870, 2468
LweI	GCATC	1 cut(s)	1885
MaeI	CTAG	4 cut(s)	74, 96, 486, 2310
MaeII	ACGT	3 cut(s)	164, 1627, 2455
MaeIII	GTNAC	4 cut(s)	139, 274, 996, 1773
MbiI	CCGCTC	1 cut(s)	1368
MflI	RGATCY	3 cut(s)	2201, 2314, 2367
MhlI	GDGCHC	5 cut(s)	633, 1007, 1074, 2358, 2473
MlyI	GAGTC	2 cut(s)	1961, 1993
MmeI	TCCRAC	2 cut(s)	1227, 2358
MroXI	GAANNNNTTC	3 cut(s)	323, 378, 1809
MseI	TTAA	6 cut(s)	573, 638, 806, 908, 1397, 1884
MslI	CAYNNNNRTG	3 cut(s)	132, 867, 1636
MspA1I	CMGCKG	2 cut(s)	1730, 2450
MspI	CCGG	1 cut(s)	2161
MspR9I	CCNGG	6 cut(s)	814, 1128, 1818, 2162, 2170, 2271
Mva1269I	GAATGC	3 cut(s)	1213, 1850, 1912
MvaI	CCWGG	5 cut(s)	814, 1128, 1818, 2170, 2271
MvnI	CGCG	1 cut(s)	1730
MwoI	GCNNNNNNNGC	8 cut(s)	348, 357, 785, 1083, 1106, 1115, 1727, 2447
NciI	CCSGG	1 cut(s)	2162
NcoI	CCATGG	3 cut(s)	287, 361, 862
NlaIV	GGNNCC	5 cut(s)	246, 1119, 1872, 2057, 2058
NmuCI	GTSAC	2 cut(s)	996, 1773
NspI	RCATGY	7 cut(s)	117, 135, 438, 585, 668, 783, 923
OliI	CACNNNNGTG	1 cut(s)	1636
PaeR7I	CTCGAG	1 cut(s)	1498
PaqCI	CACCTGC	1 cut(s)	2488
PceI	AGGCCT	1 cut(s)	2173
PciI	ACATGT	4 cut(s)	131, 581, 664, 919
PciSI	GCTCTTC	1 cut(s)	1899
PctI	GAATGC	3 cut(s)	1213, 1850, 1912
PdmI	GAANNNNTTC	3 cut(s)	323, 378, 1809
PfoI	TCCNGGA	2 cut(s)	812, 1126
PleI	GAGTC	2 cut(s)	1961, 1993
PpsI	GAGTC	2 cut(s)	1961, 1993
Ppu21I	YACGTR	2 cut(s)	165, 2456
PpuMI	RGGWCCY	2 cut(s)	245, 2056
PscI	ACATGT	4 cut(s)	131, 581, 664, 919
PsiI	TTATAA	1 cut(s)	1769
Psp124BI	GAGCTC	1 cut(s)	2473
Psp5II	RGGWCCY	2 cut(s)	245, 2056
Psp6I	CCWGG	5 cut(s)	812, 1126, 1816, 2168, 2269
PspFI	CCCAGC	3 cut(s)	47, 149, 188
PspGI	CCWGG	5 cut(s)	812, 1126, 1816, 2168, 2269
PspN4I	GGNNCC	5 cut(s)	246, 1119, 1872, 2057, 2058
PspPI	GGNCC	5 cut(s)	245, 284, 1482, 1994, 2056
PspPPI	RGGWCCY	2 cut(s)	245, 2056
PstNI	CAGNNNCTG	1 cut(s)	1187
PsuI	RGATCY	3 cut(s)	2201, 2314, 2367
PvuII	CAGCTG	1 cut(s)	2450
RsaI	GTAC	5 cut(s)	178, 685, 1284, 1707, 2408
RsaNI	GTAC	5 cut(s)	177, 684, 1283, 1706, 2407
RseI	CAYNNNNRTG	3 cut(s)	132, 867, 1636
SacI	GAGCTC	1 cut(s)	2473
SacII	CCGCGG	1 cut(s)	1731
SapI	GCTCTTC	1 cut(s)	1899
SaqAI	TTAA	6 cut(s)	573, 638, 806, 908, 1397, 1884
Sau96I	GGNCC	5 cut(s)	245, 284, 1482, 1994, 2056
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	2 cut(s)	1961, 1993
ScrFI	CCNGG	6 cut(s)	814, 1128, 1818, 2162, 2170, 2271
SduI	GDGCHC	5 cut(s)	633, 1007, 1074, 2358, 2473
SfaNI	GCATC	1 cut(s)	1885
Sfr274I	CTCGAG	1 cut(s)	1498
Sfr303I	CCGCGG	1 cut(s)	1731
SgrBI	CCGCGG	1 cut(s)	1731
SinI	GGWCC	4 cut(s)	245, 284, 1482, 2056
SlaI	CTCGAG	1 cut(s)	1498
SmiMI	CAYNNNNRTG	3 cut(s)	132, 867, 1636
SmlI	CTYRAG	4 cut(s)	251, 1374, 1498, 1790
SmoI	CTYRAG	4 cut(s)	251, 1374, 1498, 1790
SpeI	ACTAGT	1 cut(s)	95
SseBI	AGGCCT	1 cut(s)	2173
SsiI	CCGC	8 cut(s)	627, 939, 1366, 1728, 1730, 1782, 2109, 2299
SspMI	CTAG	4 cut(s)	74, 96, 486, 2310
SstI	GAGCTC	1 cut(s)	2473
StuI	AGGCCT	1 cut(s)	2173
StyD4I	CCNGG	6 cut(s)	812, 1126, 1816, 2160, 2168, 2269
StyI	CCWWGG	5 cut(s)	287, 361, 862, 1956, 2010
TaaI	ACNGT	9 cut(s)	635, 643, 688, 1002, 1441, 2051, 2128, 2152, 2239
TaiI	ACGT	3 cut(s)	167, 1630, 2458
TaqI	TCGA	5 cut(s)	1141, 1289, 1499, 1668, 1965
TatI	WGTACW	3 cut(s)	683, 1705, 2406
TauI	GCSGC	1 cut(s)	1730
Tru1I	TTAA	6 cut(s)	573, 638, 806, 908, 1397, 1884
Tru9I	TTAA	6 cut(s)	573, 638, 806, 908, 1397, 1884
TscAI	CASTG	4 cut(s)	214, 457, 1007, 1079
TseFI	GTSAC	2 cut(s)	996, 1773
Tsp45I	GTSAC	2 cut(s)	996, 1773
TspDTI	ATGAA	9 cut(s)	116, 489, 834, 1178, 1374, 1611, 1917, 2046, 2222
TspGWI	ACGGA	2 cut(s)	1474, 2481
TspRI	CASTG	4 cut(s)	214, 457, 1007, 1079
VneI	GTGCAC	1 cut(s)	1070
VpaK11BI	GGWCC	4 cut(s)	245, 284, 1482, 2056
XapI	RAATTY	4 cut(s)	122, 237, 1690, 2209
XceI	RCATGY	7 cut(s)	117, 135, 438, 585, 668, 783, 923
XhoI	CTCGAG	1 cut(s)	1498
XmiI	GTMKAC	1 cut(s)	1015
XmnI	GAANNNNTTC	3 cut(s)	323, 378, 1809
XspI	CTAG	4 cut(s)	74, 96, 486, 2310
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.