AT5G42330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016192
Physical Location & Seq
Forward (+)
16926608 .. 16927580
973 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42330.1

Sequence Viewer

Length: 618 bp
ATGTCGAAGATGAGATCTTACCTGAAACCACCGCTTCCCAAATCTCCGATCCGTCTCCGTTCACGTCAAGTCCTTCACTCTTCTCTCCAAACCCCATCGCCAGGTTTTCTAAAGCCGGGACGAAGATTGAGTGACGTAGATCTAAACCCTAAACCCCAAATCAAATACTCATCAATCTCTAGCGAGATACATGCTTTAGCAAAGATGGTGAAAGACGAGTTTGCTGAAGAAGAGGATCGCAAAAAGTCTTCGAATTTGGAGAGTTTGGCAAAGAATTCAGTTCCGTTATTCGAGAGAGGGAGGTTTTACGAGGAGTATTCGGCTAAACGGAACGAGAGATTGAGGAGGAAGAAAGGAGAAGAAGCTGTAGAAGGAGGAGTTGTGAAAGGAACTCCTTATAATCTCGGAGTTAATCATGAACCGATGACGAATAAGAGACGAGGAACGGCGAAGAAGGAGAGCATCAAGAAGACGGTGGTGTCTATGGTTGAGAGTAGTAGTATACCGAGGTATTCTCTGAGGAGTATGGCTAAGGAGAATAGGAAGCCACCGCTTCCGCTTAATGTCGCTGTAAGTGCGATGAAGAGTGTTACTACACGAAAGGGTAGGAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.25

Weight (kDa)

10.47

Isoelectric Point (pI)

65.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AasI GACNNNNNNGTC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 502
AciI CCGC 3 cut(s) 32, 551, 557
AclWI GGATC 2 cut(s) 43, 243
AcsI RAATTY 2 cut(s) 253, 274
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 101
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 1 cut(s) 365
AluI AGCT 1 cut(s) 365
Alw26I GTCTC 2 cut(s) 59, 430
AlwI GGATC 2 cut(s) 43, 243
ApoI RAATTY 2 cut(s) 253, 274
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 251
BbsI GAAGAC 2 cut(s) 240, 476
BccI CCATC 2 cut(s) 103, 199
BceAI ACGGC 1 cut(s) 462
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 59, 430
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 366
BglII AGATCT 2 cut(s) 14, 139
Bme1390I CCNGG 2 cut(s) 102, 117
BmgBI CACGTC 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 102, 117
BmsI GCATC 1 cut(s) 471
BpiI GAAGAC 2 cut(s) 240, 476
BplI GAGNNNNNCTC 2 cut(s) 499, 531
Bpu10I CCTNAGC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 506
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 506
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 509
BseRI GAGGAG 4 cut(s) 326, 358, 390, 535
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 59, 430
BsmBI CGTCTC 2 cut(s) 59, 430
BsmFI GGGAC 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 251
Bsp143I GATC 4 cut(s) 14, 48, 139, 235
BspACI CCGC 3 cut(s) 32, 551, 557
BspCNI CTCAG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 415
BspPI GGATC 2 cut(s) 43, 243
BspT104I TTCGAA 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 4 cut(s) 14, 48, 139, 235
BssNAI GTATAC 1 cut(s) 503
Bst1107I GTATAC 1 cut(s) 503
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 3 cut(s) 85, 225, 578
BstBI TTCGAA 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 518, 531
BstKTI GATC 4 cut(s) 17, 51, 142, 238
BstMAI GTCTC 2 cut(s) 59, 430
BstMBI GATC 4 cut(s) 14, 48, 139, 235
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 100, 115
BstSFI CTRYAG 1 cut(s) 366
BstV2I GAAGAC 2 cut(s) 240, 476
BstX2I RGATCY 2 cut(s) 14, 139
BstYI RGATCY 2 cut(s) 14, 139
BstZ17I GTATAC 1 cut(s) 503
BtgZI GCGATG 2 cut(s) 81, 593
BtrI CACGTC 1 cut(s) 65
CciI TCATGA 1 cut(s) 415
CviAII CATG 2 cut(s) 191, 416
CviJI RGCY 5 cut(s) 115, 323, 365, 530, 547
CviKI_1 RGCY 5 cut(s) 115, 323, 365, 530, 547
DdeI CTNAG 2 cut(s) 518, 531
DpnI GATC 4 cut(s) 16, 50, 141, 237
DpnII GATC 4 cut(s) 14, 48, 139, 235
DrdI GACNNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 478
Eam1104I CTCTTC 3 cut(s) 85, 225, 578
EarI CTCTTC 3 cut(s) 85, 225, 578
Eco57I CTGAAG 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 100
Esp3I CGTCTC 2 cut(s) 59, 430
FaeI CATG 2 cut(s) 194, 419
FaiI YATR 6 cut(s) 192, 399, 417, 485, 503, 527
FaqI GGGAC 1 cut(s) 132
FatI CATG 2 cut(s) 190, 415
FblI GTMKAC 1 cut(s) 502
FspBI CTAG 1 cut(s) 180
HapII CCGG 1 cut(s) 116
Hin1II CATG 2 cut(s) 194, 419
HinfI GANTC 1 cut(s) 612
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 62, 503
Hpy188I TCNGA 4 cut(s) 48, 407, 519, 617
Hpy188III TCNNGA 3 cut(s) 292, 416, 466
Hpy8I GTNNAC 2 cut(s) 62, 503
HpyAV CCTTC 3 cut(s) 83, 365, 448
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 2 cut(s) 64, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 2 cut(s) 518, 531
HpySE526I ACGT 2 cut(s) 64, 135
Hsp92II CATG 2 cut(s) 194, 419
Kzo9I GATC 4 cut(s) 14, 48, 139, 235
LpnPI CCDG 4 cut(s) 35, 87, 114, 129
LweI GCATC 1 cut(s) 471
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 64, 135
MaeIII GTNAC 2 cut(s) 131, 589
MalI GATC 4 cut(s) 16, 50, 141, 237
MboI GATC 4 cut(s) 14, 48, 139, 235
MflI RGATCY 2 cut(s) 14, 139
MluCI AATT 2 cut(s) 253, 274
MseI TTAA 2 cut(s) 411, 561
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 102, 117
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 575
NciI CCSGG 1 cut(s) 117
NdeII GATC 4 cut(s) 14, 48, 139, 235
NlaIII CATG 2 cut(s) 194, 419
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 194
NspV TTCGAA 1 cut(s) 251
PagI TCATGA 1 cut(s) 415
PfeI GAWTC 1 cut(s) 612
PsiI TTATAA 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PsuI RGATCY 2 cut(s) 14, 139
SaqAI TTAA 2 cut(s) 411, 561
Sau3AI GATC 4 cut(s) 14, 48, 139, 235
ScrFI CCNGG 2 cut(s) 102, 117
SetI ASST 7 cut(s) 24, 67, 106, 138, 305, 367, 512
SfaNI GCATC 1 cut(s) 471
SfcI CTRYAG 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 251
Sse9I AATT 2 cut(s) 253, 274
SsiI CCGC 3 cut(s) 32, 551, 557
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 100, 115
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 2 cut(s) 67, 138
TaqI TCGA 3 cut(s) 5, 251, 291
TasI AATT 2 cut(s) 253, 274
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 2 cut(s) 411, 561
Tru9I TTAA 2 cut(s) 411, 561
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 432, 596
TspGWI ACGGA 4 cut(s) 41, 47, 273, 343
XapI RAATTY 2 cut(s) 253, 274
XceI RCATGY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 502
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.