Rh6AG443100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016192
Physical Location & Seq
Forward (+)
63010647 .. 63011797
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG443100.1

Sequence Viewer

Length: 621 bp
ATGTCAAGGATGAAACTGGACCGCAAGCCTCCGCTGGCCAAGTCCCCGATCCGGGTCCGACCGCCCAGTCTGGTCCTCCGATCAGGCGCAACCTCTCTGCAAACCCCACCAGGGTCGCTGACGAAATCCCAGAAACCGAGCCGGATGGAGGAACCGGATCTCCGGCCAGAGTACCGCTCCATTTCCTGCGAATTGAGGGCTCTGGCTAAGATGGTCGGCAAGGAATTCGGGGATGAAGATTGCGAAAAGGCCGGTGGGGTTCGTGCTAATTCAAGCCCTTTGTTTGAGAGGGGGAGATTCTATGAGGAATACTCTGCTAGAAGAAATGAGAGGCTGAGGAAGAAGTATGGCGGAACAGGGGAGGAGTTCAAGTCTGCGTTTAAGCAGAAGCTGGGGGTTGCGGTGGAGTCTGCGAAGCGAGGCAGTGGGACTAGGAAGCTCGAAAGCATCAGGAAATCGGTGTCTGCGGCCTACTCGGTGGAGCCGCCGAGGTATATGCTGAGAAGTATGAGCAAGGATAATAAGAAGCCTCCTCTGTCTCAGCCTCCTGCTCTGTATTCTGCTCAGAAATCCGTGATAGGAGGGGGAAGGAAGACAGCATCTCGAAGAGTTGGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.93

Weight (kDa)

10.38

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 177
AciI CCGC 8 cut(s) 22, 32, 62, 175, 351, 401, 467, 485
AclWI GGATC 2 cut(s) 43, 165
AcoI YGGCCR 2 cut(s) 36, 164
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
AgsI TTSAA 2 cut(s) 273, 370
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 2 cut(s) 391, 439
AluI AGCT 2 cut(s) 391, 439
Alw26I GTCTC 1 cut(s) 543
AlwI GGATC 2 cut(s) 43, 165
AlwNI CAGNNNCTG 1 cut(s) 391
AoxI GGCC 4 cut(s) 36, 164, 249, 468
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 3 cut(s) 19, 55, 73
AsuC2I CCSGG 1 cut(s) 53
AvaII GGWCC 3 cut(s) 19, 55, 73
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 599
BbvCI CCTCAGC 1 cut(s) 335
BccI CCATC 2 cut(s) 139, 205
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 478, 512
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 2 cut(s) 318, 432
BisI GCNGC 2 cut(s) 468, 485
BlsI GCNGC 2 cut(s) 469, 486
Bme1390I CCNGG 2 cut(s) 53, 111
Bme18I GGWCC 3 cut(s) 19, 55, 73
BmgT120I GGNCC 3 cut(s) 19, 55, 73
BmiI GGNNCC 3 cut(s) 56, 153, 483
BmrFI CCNGG 2 cut(s) 53, 111
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 456, 608
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 599
BplI GAGNNNNNCTC 4 cut(s) 161, 193, 296, 328
Bpu10I CCTNAGC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 110, 488
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 356, 386
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 21, 66
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 110, 488
BseGI GGATG 3 cut(s) 15, 150, 238
BseLI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
BseMII CTCAG 4 cut(s) 326, 491, 554, 578
BseNI ACTGG 2 cut(s) 21, 66
BseRI GAGGAG 2 cut(s) 377, 522
BseYI CCCAGC 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 4 cut(s) 38, 166, 251, 470
BsiEI CGRYCG 1 cut(s) 62
BsiSI CCGG 5 cut(s) 52, 142, 155, 163, 252
BslFI GGGAC 2 cut(s) 28, 442
BslI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
BsmAI GTCTC 1 cut(s) 543
BsmFI GGGAC 2 cut(s) 28, 442
BsnI GGCC 4 cut(s) 38, 166, 251, 470
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 3 cut(s) 48, 80, 157
BspACI CCGC 8 cut(s) 22, 32, 62, 175, 351, 401, 467, 485
BspANI GGCC 4 cut(s) 38, 166, 251, 470
BspCNI CTCAG 4 cut(s) 327, 492, 553, 577
BspLI GGNNCC 3 cut(s) 56, 153, 483
BspPI GGATC 2 cut(s) 43, 165
BsrBI CCGCTC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 2 cut(s) 21, 66
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 110, 488
BssMI GATC 3 cut(s) 48, 80, 157
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 601
BstC8I GCNNGC 2 cut(s) 26, 36
BstDEI CTNAG 5 cut(s) 207, 335, 500, 540, 564
BstF5I GGATG 3 cut(s) 15, 150, 238
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 3 cut(s) 51, 83, 160
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 3 cut(s) 48, 80, 157
BstMCI CGRYCG 1 cut(s) 62
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 51, 109
BstV2I GAAGAC 1 cut(s) 599
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 4 cut(s) 38, 166, 251, 470
BtsCI GGATG 3 cut(s) 15, 150, 238
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 2 cut(s) 26, 36
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 3 cut(s) 19, 55, 73
Csp6I GTAC 1 cut(s) 172
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 5 cut(s) 207, 335, 500, 540, 564
DpnI GATC 3 cut(s) 50, 82, 159
DpnII GATC 3 cut(s) 48, 80, 157
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 2 cut(s) 36, 164
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
EciI GGCGGA 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 202
Eco47I GGWCC 3 cut(s) 19, 55, 73
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 202
FaiI YATR 5 cut(s) 303, 348, 495, 497, 509
FaqI GGGAC 2 cut(s) 28, 442
Fnu4HI GCNGC 2 cut(s) 468, 485
FokI GGATG 3 cut(s) 22, 157, 245
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 468, 485
FspBI CTAG 2 cut(s) 318, 432
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 468, 485
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 4 cut(s) 38, 166, 251, 470
HapII CCGG 5 cut(s) 52, 142, 155, 163, 252
HhaI GCGC 1 cut(s) 89
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 2 cut(s) 297, 407
HpaII CCGG 5 cut(s) 52, 142, 155, 163, 252
Hpy188I TCNGA 3 cut(s) 59, 80, 567
Hpy188III TCNNGA 2 cut(s) 451, 603
HpyAV CCTTC 1 cut(s) 582
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 207, 335, 500, 540, 564
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 3 cut(s) 48, 80, 157
LmnI GCTCC 2 cut(s) 182, 481
LweI GCATC 2 cut(s) 456, 608
MaeI CTAG 2 cut(s) 318, 432
MalI GATC 3 cut(s) 50, 82, 159
MbiI CCGCTC 1 cut(s) 177
MboI GATC 3 cut(s) 48, 80, 157
MboII GAAGA 5 cut(s) 248, 333, 352, 604, 618
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 3 cut(s) 191, 224, 268
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 5 cut(s) 52, 142, 155, 163, 252
MspR9I CCNGG 2 cut(s) 53, 111
MvaI CCWGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 53
NdeII GATC 3 cut(s) 48, 80, 157
NlaIV GGNNCC 3 cut(s) 56, 153, 483
NmeAIII GCCGAG 1 cut(s) 513
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 2 cut(s) 469, 486
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 3 cut(s) 56, 153, 483
PspPI GGNCC 3 cut(s) 19, 55, 73
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 2 cut(s) 468, 485
Sau3AI GATC 3 cut(s) 48, 80, 157
Sau96I GGNCC 3 cut(s) 19, 55, 73
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 53, 111
SduI GDGCHC 1 cut(s) 202
SetI ASST 4 cut(s) 95, 393, 441, 494
SfaNI GCATC 2 cut(s) 456, 608
SinI GGWCC 3 cut(s) 19, 55, 73
Sse9I AATT 3 cut(s) 191, 224, 268
SsiI CCGC 8 cut(s) 22, 32, 62, 175, 351, 401, 467, 485
SspMI CTAG 2 cut(s) 318, 432
StyD4I CCNGG 2 cut(s) 51, 109
TaqI TCGA 2 cut(s) 441, 604
TasI AATT 3 cut(s) 191, 224, 268
TauI GCSGC 2 cut(s) 470, 487
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 26, 249
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 3 cut(s) 19, 55, 73
XapI RAATTY 1 cut(s) 224
XspI CTAG 2 cut(s) 318, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.