Prupe.1G354300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016192
Physical Location & Seq
Reverse (-)
32909909 .. 32911251
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G354300.1

Sequence Viewer

Length: 852 bp
ATGTCAAAGATGAAACCGGATCGCAAGCCTCCGCTTGCTAAATCACCCATCAGGCTTCGACCCCGTCGGGTCCTCGGATCAAACGCAAACTGTATGCCAACCCCAGCAGGGCGGTCTGAGATCGGGTTCGAGCAAACCGATAAAATTTTAACAGGCGGATCTTTAAGAAAATCGGAGAAAGCAAGGCGCTCAGGCACATGGGAGATGGAAGAAGCGGAGCTTCGACCTGAATACCGCTCCATTTCGTGGGAACTGAGGGCTTTAGAAAAGATGGTAACTGGAGAGGAATTGGGCAAGGAAGATTATTGTGGTGGTGGTGGAGATACTGATAGCAGCAGCAGCCATAGGCTGAGTTCGTTGAATTCGAGTCCTTTGTTTGAAAGGGGTAGGTTTTACGAGGAGTATTCTGCTAGAAGGAATGAGCGGTTGAATAGGAAGAATAAGATCAAGGTAAAGGAGGGCGGTTGTGAGACAAATTATTCAAAAACTGCCGCGTCTGCGTCCGCCTCTAAATATAAGTTGGGTGTTACAGTAGAATCTGCCAAAAGAAACAGTTTTACCAGCACTCGTACTACTACTAGCAGCAGGAAGCTTCAAAGCTTGAGGAAATCAGTCTCTGCTGCTTACTCGGTGGTGGAGACTCAACAGGCTCCGTCTCCAACTCCGGCTCCGGCTCCGACTCCCAGGTATATGCTGAGAAGCTTGATGAACAAAGAGAATATGAAGCCTCCTCTGCCTCAGCCTACTTTGTACTCCTCTCATCAAAATCATAAATCTGCAAACCGTGGGGGACGGAAAACCGGAGCTCCAACTCCAACTCCAACTCCATCTCCAAGGGTTGGGTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.41

Weight (kDa)

10.15

Isoelectric Point (pI)

67.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 246, 839
AccBSI CCGCTC 2 cut(s) 237, 424
AccII CGCG 1 cut(s) 494
AciI CCGC 9 cut(s) 32, 112, 156, 215, 235, 424, 462, 492, 504
AclWI GGATC 3 cut(s) 27, 85, 166
AcsI RAATTY 2 cut(s) 144, 361
AfaI GTAC 2 cut(s) 571, 752
AfiI CCNNNNNNNGG 3 cut(s) 108, 246, 839
AgsI TTSAA 5 cut(s) 361, 380, 430, 483, 596
AjnI CCWGG 1 cut(s) 683
AluBI AGCT 5 cut(s) 220, 592, 600, 702, 806
AluI AGCT 5 cut(s) 220, 592, 600, 702, 806
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 4 cut(s) 464, 619, 632, 660
AlwI GGATC 3 cut(s) 27, 85, 166
AlwNI CAGNNNCTG 1 cut(s) 617
ApeKI GCWGC 5 cut(s) 333, 336, 339, 582, 620
ApoI RAATTY 2 cut(s) 144, 361
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 36
AvaII GGWCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 808
Bbv12I GWGCWC 1 cut(s) 808
BbvCI CCTCAGC 1 cut(s) 738
BbvI GCAGC 5 cut(s) 345, 348, 351, 594, 607
BccI CCATC 4 cut(s) 56, 199, 265, 835
BciT130I CCWGG 1 cut(s) 685
BcoDI GTCTC 4 cut(s) 464, 619, 632, 660
BfaI CTAG 2 cut(s) 411, 579
BfoI RGCGCY 1 cut(s) 190
BisI GCNGC 6 cut(s) 334, 337, 340, 492, 583, 621
BlsI GCNGC 6 cut(s) 335, 338, 341, 493, 584, 622
Bme1390I CCNGG 1 cut(s) 685
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 4 cut(s) 71, 651, 669, 675
BmrFI CCNGG 1 cut(s) 685
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 2 cut(s) 190, 738
BpuEI CTTGAG 1 cut(s) 622
BsaJI CCNNGG 4 cut(s) 73, 683, 784, 833
BsaWI WCCGGW 2 cut(s) 16, 800
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 246, 839
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 685
BseDI CCNNGG 4 cut(s) 73, 683, 784, 833
BseLI CCNNNNNNNGG 3 cut(s) 108, 246, 839
BseMII CTCAG 6 cut(s) 108, 204, 245, 341, 686, 752
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 3 cut(s) 413, 720, 745
BseXI GCAGC 5 cut(s) 345, 348, 351, 594, 607
BseYI CCCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 808
BsiSI CCGG 4 cut(s) 17, 665, 671, 801
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 3 cut(s) 108, 246, 839
BsmAI GTCTC 4 cut(s) 464, 619, 632, 660
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 808
Bsp143I GATC 5 cut(s) 19, 77, 120, 158, 444
BspACI CCGC 9 cut(s) 32, 112, 156, 215, 235, 424, 462, 492, 504
BspCNI CTCAG 6 cut(s) 109, 203, 246, 342, 687, 751
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 4 cut(s) 71, 651, 669, 675
BspPI GGATC 3 cut(s) 27, 85, 166
BsrBI CCGCTC 2 cut(s) 237, 424
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 4 cut(s) 73, 683, 784, 833
BssMI GATC 5 cut(s) 19, 77, 120, 158, 444
BssT1I CCWWGG 1 cut(s) 833
Bst2UI CCWGG 1 cut(s) 685
Bst4CI ACNGT 4 cut(s) 92, 532, 554, 785
BstC8I GCNNGC 2 cut(s) 26, 36
BstDEI CTNAG 6 cut(s) 117, 190, 254, 350, 695, 738
BstDSI CCRYGG 1 cut(s) 784
BstFNI CGCG 1 cut(s) 494
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 5 cut(s) 22, 80, 123, 161, 447
BstMAI GTCTC 4 cut(s) 464, 619, 632, 660
BstMBI GATC 5 cut(s) 19, 77, 120, 158, 444
BstMWI GCNNNNNNNGC 3 cut(s) 339, 497, 733
BstNI CCWGG 1 cut(s) 685
BstSCI CCNGG 1 cut(s) 683
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 5 cut(s) 345, 348, 351, 594, 607
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 784
Cac8I GCNNGC 2 cut(s) 26, 36
CaiI CAGNNNCTG 1 cut(s) 617
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 2 cut(s) 483, 489
Csp6I GTAC 2 cut(s) 570, 751
CviAII CATG 1 cut(s) 198
CviQI GTAC 2 cut(s) 570, 751
DdeI CTNAG 6 cut(s) 117, 190, 254, 350, 695, 738
DpnI GATC 5 cut(s) 21, 79, 122, 160, 446
DpnII GATC 5 cut(s) 19, 77, 120, 158, 444
EciI GGCGGA 2 cut(s) 171, 493
Ecl136II GAGCTC 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 833
Eco24I GRGCYC 1 cut(s) 808
Eco47I GGWCC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 806
EcoICRI GAGCTC 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 683
EcoT14I CCWWGG 1 cut(s) 833
EcoT38I GRGCYC 1 cut(s) 808
ErhI CCWWGG 1 cut(s) 833
Esp3I CGTCTC 1 cut(s) 660
FaeI CATG 1 cut(s) 201
FaiI YATR 8 cut(s) 95, 199, 345, 516, 690, 692, 722, 771
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 1 cut(s) 804
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 6 cut(s) 334, 337, 340, 492, 583, 621
FriOI GRGCYC 1 cut(s) 808
Fsp4HI GCNGC 6 cut(s) 334, 337, 340, 492, 583, 621
FspBI CTAG 2 cut(s) 411, 579
GlaI GCGC 1 cut(s) 188
GluI GCNGC 6 cut(s) 334, 337, 340, 492, 583, 621
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 190
HapII CCGG 4 cut(s) 17, 665, 671, 801
HgaI GACGC 2 cut(s) 483, 489
HhaI GCGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 3 cut(s) 590, 598, 700
HinfI GANTC 4 cut(s) 367, 536, 640, 679
HpaII CCGG 4 cut(s) 17, 665, 671, 801
HphI GGTGA 1 cut(s) 36
Hpy188I TCNGA 4 cut(s) 77, 118, 175, 678
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 408
HpyCH4III ACNGT 4 cut(s) 92, 532, 554, 785
HpyCH4V TGCA 1 cut(s) 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 339, 497, 733
HpyF3I CTNAG 6 cut(s) 117, 190, 254, 350, 695, 738
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 5 cut(s) 19, 77, 120, 158, 444
LmnI GCTCC 7 cut(s) 217, 242, 655, 673, 679, 803, 811
Lsp1109I GCAGC 5 cut(s) 345, 348, 351, 594, 607
MaeI CTAG 2 cut(s) 411, 579
MaeIII GTNAC 2 cut(s) 274, 526
MalI GATC 5 cut(s) 21, 79, 122, 160, 446
MbiI CCGCTC 2 cut(s) 237, 424
MboI GATC 5 cut(s) 19, 77, 120, 158, 444
MboII GAAGA 3 cut(s) 221, 311, 448
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 808
MluCI AATT 4 cut(s) 144, 287, 361, 475
MlyI GAGTC 3 cut(s) 376, 634, 673
MmeI TCCRAC 5 cut(s) 683, 701, 833, 839, 845
MseI TTAA 2 cut(s) 149, 164
MspI CCGG 4 cut(s) 17, 665, 671, 801
MspR9I CCNGG 1 cut(s) 685
MvaI CCWGG 1 cut(s) 685
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 3 cut(s) 339, 497, 733
NdeII GATC 5 cut(s) 19, 77, 120, 158, 444
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 4 cut(s) 71, 651, 669, 675
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 362
PfeI GAWTC 1 cut(s) 536
PflFI GACNNNGTC 1 cut(s) 63
PflMI CCANNNNNTGG 2 cut(s) 246, 839
PkrI GCNGC 6 cut(s) 335, 338, 341, 493, 584, 622
PleI GAGTC 3 cut(s) 375, 634, 673
PpsI GAGTC 3 cut(s) 375, 634, 673
PpuMI RGGWCCY 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 808
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 683
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 683
PspN4I GGNNCC 4 cut(s) 71, 651, 669, 675
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 63
RsaI GTAC 2 cut(s) 571, 752
RsaNI GTAC 2 cut(s) 570, 751
SacI GAGCTC 1 cut(s) 808
SaqAI TTAA 2 cut(s) 149, 164
SatI GCNGC 6 cut(s) 334, 337, 340, 492, 583, 621
Sau3AI GATC 5 cut(s) 19, 77, 120, 158, 444
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 3 cut(s) 376, 634, 673
ScrFI CCNGG 1 cut(s) 685
SduI GDGCHC 1 cut(s) 808
SetI ASST 9 cut(s) 222, 229, 392, 453, 594, 602, 689, 704, 808
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
Sse9I AATT 4 cut(s) 144, 287, 361, 475
SsiI CCGC 9 cut(s) 32, 112, 156, 215, 235, 424, 462, 492, 504
SspMI CTAG 2 cut(s) 411, 579
SstI GAGCTC 1 cut(s) 808
StyD4I CCNGG 1 cut(s) 683
StyI CCWWGG 1 cut(s) 833
TaaI ACNGT 4 cut(s) 92, 532, 554, 785
TaqI TCGA 4 cut(s) 58, 129, 223, 365
TasI AATT 4 cut(s) 144, 287, 361, 475
TatI WGTACW 1 cut(s) 750
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 2 cut(s) 149, 164
Tru9I TTAA 2 cut(s) 149, 164
TseI GCWGC 5 cut(s) 333, 336, 339, 582, 620
TspDTI ATGAA 3 cut(s) 26, 722, 737
TspGWI ACGGA 2 cut(s) 642, 808
Tth111I GACNNNGTC 1 cut(s) 63
Van91I CCANNNNNTGG 2 cut(s) 246, 839
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 144, 361
XspI CTAG 2 cut(s) 411, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.