Rh6BG459300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016192
Physical Location & Seq
Reverse (-)
67053198 .. 67053930
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG459300.1

Sequence Viewer

Length: 642 bp
ATGTCAAGGATGAAACTGGACCGCAAGCCTCCGCTGGCCAAGTCCCCGATCCGGGTCCGACCGCCCAGTCGGGTCCTCCGATCAGGCCCAACCTCTCTGCAAACCCCACCAGGGTCCCAGAAACCGAGCCGGATGTGGGACATGGAGGAACCGGATCTCCGGCCAGAGTACCGCTCCATTTCCTGCGAATTGAGGGCTCTGGCTAAGATGGTCGGCAAGGAATTCGGGGATGAAGATTGCGAAAAGGCCAAGGCCGGTGGGGTTCGTAAATCAGTGAGTGCTAATTCAAGCCCTTTGTTTGAGAGGGGGAGATTCTATGAGGAATACTCTGCTAGAAGAAATGAGAGGCTGAGGAAGAAGTATGGCGGAACAGGAACAGGGGAGGAGTTTAAGTCTGCGTTTAAGCAGAAGCTGGGGGTTGCGGTGGAGTCTGCGAAGCGAGGCAGTGGGACTAGGAAGCTGGAAAGCATGAGGAAATCAGTGTCTGCGGCCTACTCGGTGGAGAGGACAAGCGAGACGCCGAGGTATATGCTGAGGAGTATGAGCAAGGAGAATAAGAAGCCTCCTCTGGCTCAGCCTCCTGCTCTGTATTCTGCTCAGAAATTGGTGATAGGAACAGCATCTCGAAGAGTTGGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.88

Weight (kDa)

10.32

Isoelectric Point (pI)

60.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 174
AciI CCGC 7 cut(s) 22, 32, 62, 172, 366, 422, 488
AclWI GGATC 2 cut(s) 43, 162
AcoI YGGCCR 2 cut(s) 36, 161
AcsI RAATTY 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 518
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 136
AgsI TTSAA 1 cut(s) 288
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 2 cut(s) 412, 460
AluI AGCT 2 cut(s) 412, 460
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 2 cut(s) 43, 162
AlwNI CAGNNNCTG 2 cut(s) 412, 485
AoxI GGCC 6 cut(s) 36, 85, 161, 246, 252, 489
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 5 cut(s) 19, 55, 73, 86, 114
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 619
AvaII GGWCC 4 cut(s) 19, 55, 73, 114
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 199
BbvCI CCTCAGC 2 cut(s) 350, 533
BccI CCATC 1 cut(s) 202
BcgI CGANNNNNNTGC 4 cut(s) 205, 239, 511, 545
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 2 cut(s) 333, 453
BisI GCNGC 1 cut(s) 489
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 2 cut(s) 53, 111
Bme18I GGWCC 4 cut(s) 19, 55, 73, 114
BmgT120I GGNCC 5 cut(s) 19, 55, 73, 86, 114
BmiI GGNNCC 5 cut(s) 56, 74, 115, 116, 150
BmrFI CCNGG 2 cut(s) 53, 111
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 629
BmuI ACTGGG 1 cut(s) 60
BplI GAGNNNNNCTC 4 cut(s) 158, 190, 311, 343
Bpu10I CCTNAGC 2 cut(s) 350, 533
Bpu1102I GCTNAGC 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 110, 249, 521
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 377, 407
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 52, 111, 136
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 21, 66
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 110, 249, 521
BseGI GGATG 3 cut(s) 15, 138, 235
BseLI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 136
BseMII CTCAG 4 cut(s) 341, 524, 587, 611
BseNI ACTGG 2 cut(s) 21, 66
BseRI GAGGAG 3 cut(s) 398, 550, 555
BseYI CCCAGC 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 6 cut(s) 38, 87, 163, 248, 254, 491
BsiEI CGRYCG 1 cut(s) 62
BsiSI CCGG 5 cut(s) 52, 130, 152, 160, 255
BslFI GGGAC 4 cut(s) 28, 100, 152, 463
BslI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 136
BsmAI GTCTC 1 cut(s) 509
BsmBI CGTCTC 1 cut(s) 509
BsmFI GGGAC 4 cut(s) 28, 100, 152, 463
BsnI GGCC 6 cut(s) 38, 87, 163, 248, 254, 491
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 3 cut(s) 48, 80, 154
Bsp1720I GCTNAGC 1 cut(s) 573
BspACI CCGC 7 cut(s) 22, 32, 62, 172, 366, 422, 488
BspANI GGCC 6 cut(s) 38, 87, 163, 248, 254, 491
BspCNI CTCAG 4 cut(s) 342, 525, 586, 610
BspLI GGNNCC 5 cut(s) 56, 74, 115, 116, 150
BspPI GGATC 2 cut(s) 43, 162
BsrBI CCGCTC 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 2 cut(s) 21, 66
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 110, 249, 521
BssMI GATC 3 cut(s) 48, 80, 154
BssNI GRCGYC 1 cut(s) 518
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 622
BstACI GRCGYC 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 26, 36
BstDEI CTNAG 5 cut(s) 204, 350, 533, 573, 597
BstF5I GGATG 3 cut(s) 15, 138, 235
BstKTI GATC 3 cut(s) 51, 83, 157
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 3 cut(s) 48, 80, 154
BstMCI CGRYCG 1 cut(s) 62
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 51, 109
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 6 cut(s) 38, 87, 163, 248, 254, 491
BtsCI GGATG 3 cut(s) 15, 138, 235
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 3 cut(s) 279, 451, 486
Cac8I GCNNGC 2 cut(s) 26, 36
CaiI CAGNNNCTG 2 cut(s) 412, 485
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 5 cut(s) 19, 55, 73, 86, 114
CseI GACGC 1 cut(s) 526
Csp6I GTAC 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 2 cut(s) 142, 469
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 5 cut(s) 204, 350, 533, 573, 597
DpnI GATC 3 cut(s) 50, 82, 156
DpnII GATC 3 cut(s) 48, 80, 154
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 2 cut(s) 36, 161
Eam1104I CTCTTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 622
EciI GGCGGA 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 4 cut(s) 19, 55, 73, 114
EcoO109I RGGNCCY 2 cut(s) 73, 114
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 2 cut(s) 145, 472
FaiI YATR 7 cut(s) 143, 318, 363, 470, 528, 530, 542
FaqI GGGAC 4 cut(s) 28, 100, 152, 463
FatI CATG 2 cut(s) 141, 468
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 3 cut(s) 22, 145, 242
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 2 cut(s) 333, 453
GluI GCNGC 1 cut(s) 489
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 6 cut(s) 38, 87, 163, 248, 254, 491
HapII CCGG 5 cut(s) 52, 130, 152, 160, 255
HgaI GACGC 1 cut(s) 526
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 2 cut(s) 145, 472
HinfI GANTC 2 cut(s) 312, 428
HpaII CCGG 5 cut(s) 52, 130, 152, 160, 255
HphI GGTGA 1 cut(s) 619
Hpy188I TCNGA 3 cut(s) 59, 80, 600
Hpy188III TCNNGA 1 cut(s) 624
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 204, 350, 533, 573, 597
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 2 cut(s) 145, 472
KflI GGGWCCC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 48, 80, 154
LmnI GCTCC 1 cut(s) 179
LweI GCATC 1 cut(s) 629
MaeI CTAG 2 cut(s) 333, 453
MalI GATC 3 cut(s) 50, 82, 156
MbiI CCGCTC 1 cut(s) 174
MboI GATC 3 cut(s) 48, 80, 154
MboII GAAGA 4 cut(s) 245, 348, 367, 639
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 4 cut(s) 188, 221, 283, 602
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 2 cut(s) 390, 402
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 5 cut(s) 52, 130, 152, 160, 255
MspR9I CCNGG 2 cut(s) 53, 111
MvaI CCWGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 53
NdeII GATC 3 cut(s) 48, 80, 154
NlaIII CATG 2 cut(s) 145, 472
NlaIV GGNNCC 5 cut(s) 56, 74, 115, 116, 150
NmeAIII GCCGAG 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PpuMI RGGWCCY 2 cut(s) 73, 114
Psp5II RGGWCCY 2 cut(s) 73, 114
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 5 cut(s) 56, 74, 115, 116, 150
PspPI GGNCC 5 cut(s) 19, 55, 73, 86, 114
PspPPI RGGWCCY 2 cut(s) 73, 114
PstNI CAGNNNCTG 2 cut(s) 412, 485
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 390, 402
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 3 cut(s) 48, 80, 154
Sau96I GGNCC 5 cut(s) 19, 55, 73, 86, 114
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 2 cut(s) 53, 111
SduI GDGCHC 1 cut(s) 199
SetI ASST 4 cut(s) 95, 414, 462, 527
SfaNI GCATC 1 cut(s) 629
SinI GGWCC 4 cut(s) 19, 55, 73, 114
Sse9I AATT 4 cut(s) 188, 221, 283, 602
SsiI CCGC 7 cut(s) 22, 32, 62, 172, 366, 422, 488
SspMI CTAG 2 cut(s) 333, 453
StyD4I CCNGG 2 cut(s) 51, 109
StyI CCWWGG 1 cut(s) 249
TaqI TCGA 1 cut(s) 625
TasI AATT 4 cut(s) 188, 221, 283, 602
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 2 cut(s) 390, 402
Tru9I TTAA 2 cut(s) 390, 402
TscAI CASTG 3 cut(s) 279, 451, 486
TspDTI ATGAA 2 cut(s) 26, 246
TspRI CASTG 3 cut(s) 279, 451, 486
VpaK11BI GGWCC 4 cut(s) 19, 55, 73, 114
XapI RAATTY 1 cut(s) 221
XspI CTAG 2 cut(s) 333, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.