Rorug06G0329700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016192
Physical Location & Seq
Forward (+)
48303642 .. 48304454
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0329700.1

Sequence Viewer

Length: 411 bp
ATGGGTGTTCTTCTTCTTCATCTCAAAGTTGCAGCAACTATAATCTCATTCTTAGGGTTCTGCACTGTGATCAGAGGCGTTCCGGATACGAATATAACAAGTGTTCTGTGCAACCAAGGTGTGTATACTTCTGGTGATCCATTTGCTATAAGCCTTGCATATGTTCTTCAGGAACTGGAGACTGCAACAGCAGCACACAAGAACTATGATTACTATGACATATCTCCATACCCTAATGCTTTTGCTTACGGCCATGCTTCTTGCAACCCGAACGTGACAAGCTCCGACTGCACTACTTGTCTCGGTATTGCGAAAACCGACATGTTAGGTACTTGTCAGAGCAATATAGGGGGCCGTGCTGTACTTGGTGATTGTTCAATCAGGTATGAGCAATACCCATTCACCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.62

Weight (kDa)

4.92

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 37 - 132 2.2e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 82
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 2 cut(s) 331, 363
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 378
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 173, 305
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 175
Aor13HI TCCGGA 1 cut(s) 82
AoxI GGCC 2 cut(s) 250, 352
ApeKI GCWGC 2 cut(s) 32, 191
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 3 cut(s) 146, 380, 394
BbvI GCAGC 2 cut(s) 44, 203
BceAI ACGGC 2 cut(s) 265, 339
BciVI GTATCC 1 cut(s) 79
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 173, 305
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 2 cut(s) 33, 192
BlsI GCNGC 2 cut(s) 34, 193
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 180
BseAI TCCGGA 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 44, 203
BsgI GTGCAG 2 cut(s) 46, 274
BshFI GGCC 2 cut(s) 252, 354
BsiSI CCGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 173, 305
BsnI GGCC 2 cut(s) 252, 354
Bsp13I TCCGGA 1 cut(s) 82
Bsp143I GATC 2 cut(s) 69, 136
BspANI GGCC 2 cut(s) 252, 354
BspEI TCCGGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 353
BspPI GGATC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 2 cut(s) 69, 136
BssNAI GTATAC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 115
Bst1107I GTATAC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 52
BstKTI GATC 2 cut(s) 72, 139
BstMAI GTCTC 2 cut(s) 173, 305
BstMBI GATC 2 cut(s) 69, 136
BstMWI GCNNNNNNNGC 2 cut(s) 191, 288
BstNSI RCATGY 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 44, 203
BstZ17I GTATAC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 2 cut(s) 252, 354
BtsIMutI CAGTG 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 330, 362
CviAII CATG 2 cut(s) 254, 322
CviJI RGCY 4 cut(s) 153, 252, 282, 354
CviKI_1 RGCY 4 cut(s) 153, 252, 282, 354
CviQI GTAC 2 cut(s) 330, 362
DdeI CTNAG 1 cut(s) 52
DpnI GATC 2 cut(s) 71, 138
DpnII GATC 2 cut(s) 69, 136
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 2 cut(s) 257, 325
FatI CATG 2 cut(s) 253, 321
FauNDI CATATG 1 cut(s) 160
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 2 cut(s) 33, 192
Fsp4HI GCNGC 2 cut(s) 33, 192
GluI GCNGC 2 cut(s) 33, 192
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 2 cut(s) 252, 354
HapII CCGG 1 cut(s) 83
Hin1II CATG 2 cut(s) 257, 325
HpaII CCGG 1 cut(s) 83
HphI GGTGA 3 cut(s) 146, 380, 394
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 74, 286, 339
Hpy188III TCNNGA 2 cut(s) 83, 170
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 7 cut(s) 32, 63, 111, 158, 185, 264, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 288
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 257, 325
Kpn2I TCCGGA 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 69, 136
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 5 cut(s) 96, 117, 155, 161, 367
Lsp1109I GCAGC 2 cut(s) 44, 203
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 71, 138
MboI GATC 2 cut(s) 69, 136
MboII GAAGA 3 cut(s) 5, 8, 158
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 1 cut(s) 68
MroI TCCGGA 1 cut(s) 82
MspI CCGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 191, 288
NdeI CATATG 1 cut(s) 160
NdeII GATC 2 cut(s) 69, 136
NlaIII CATG 2 cut(s) 257, 325
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 325
PciI ACATGT 1 cut(s) 321
PkrI GCNGC 2 cut(s) 34, 193
PscI ACATGT 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 352
PsrI GAACNNNNNNTAC 2 cut(s) 194, 226
PstNI CAGNNNCTG 1 cut(s) 175
RsaI GTAC 2 cut(s) 331, 363
RsaNI GTAC 2 cut(s) 330, 362
SatI GCNGC 2 cut(s) 33, 192
Sau3AI GATC 2 cut(s) 69, 136
Sau96I GGNCC 1 cut(s) 352
SetI ASST 5 cut(s) 121, 276, 284, 331, 386
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 276
TatI WGTACW 1 cut(s) 361
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 32, 191
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 8
TspRI CASTG 1 cut(s) 70
XceI RCATGY 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.