Rmu_sc0001652.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001652.1
OG0016192
Physical Location & Seq
Reverse (-)
2 .. 1886
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001652.1_g000001.1.cds

Sequence Viewer

Length: 878 bp
atgtcaaggatgaaactggaccgcaagcctccgctggccaagtccccgatccgggtccgaccgcccagtctggtcctccgatcaggcgcaacctctctgcaaaccccaccagggtcgctggcgaaatcccagaaaccgagccggatggaggaaccggatctccggccagagtaccgctccatttcctgcgagttgagggctctggctaagatggttggcaaggaattcggggatgaagattgcgaaaaggccggtggggttcgtgctaattcaagccctttgtttgagagggggagattctatgaggaatactctgctagaagaaatgagaggctgaggaagaagtatggaggaacaggggaggagttcaagtctgcgtttaagcagaagctgggggttgcggtggagtctgcgaagcgaggcagtgggactaggaagctcgaaagcatgaggaaatcggtgtctgcggcctactcggtggagccgccgaggtatatgctgagaagtatgagcaaggagaataagaagcctcctctggctcagcctcctgctctgtattctgctcagaaatcggtgataggagggggaaggaagacagcatctcgaagagttgggatgaaactggaccgcaagcctccgctggccaagtccccgatccgggtccgaccgcccagtctggtcctccgatcaggcgcaacctctctgcaaaccccaccagggtcgctggcgaaatcccagaaaccgagccggatggaggaaccggatctccggccggagtaccgctccatttcctgcgaattgagggctctggctaagatggttggcaaggaattcggggatgaagattgcgaaaaggccggtggggttcgtgctaattc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.35

Weight (kDa)

10.3

Isoelectric Point (pI)

65.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 66, 672
AccBSI CCGCTC 2 cut(s) 177, 783
AclWI GGATC 4 cut(s) 43, 165, 649, 771
AcoI YGGCCR 4 cut(s) 36, 164, 642, 770
AcsI RAATTY 2 cut(s) 224, 830
AfaI GTAC 2 cut(s) 173, 779
AfiI CCNNNNNNNGG 8 cut(s) 51, 52, 111, 148, 657, 658, 717, 754
AgsI TTSAA 2 cut(s) 273, 370
AjnI CCWGG 2 cut(s) 109, 715
AloI GAACNNNNNNTCC 4 cut(s) 144, 176, 750, 782
AluBI AGCT 2 cut(s) 391, 439
AluI AGCT 2 cut(s) 391, 439
AlwI GGATC 4 cut(s) 43, 165, 649, 771
AlwNI CAGNNNCTG 1 cut(s) 391
AoxI GGCC 7 cut(s) 36, 164, 249, 468, 642, 770, 855
ApoI RAATTY 2 cut(s) 224, 830
AspLEI GCGC 2 cut(s) 89, 695
AspS9I GGNCC 6 cut(s) 19, 55, 73, 625, 661, 679
AsuC2I CCSGG 2 cut(s) 53, 659
AsuHPI GGTGA 1 cut(s) 586
AvaII GGWCC 6 cut(s) 19, 55, 73, 625, 661, 679
BalI TGGCCA 2 cut(s) 38, 644
BanII GRGCYC 2 cut(s) 202, 808
BbsI GAAGAC 1 cut(s) 599
BbvCI CCTCAGC 1 cut(s) 335
BccI CCATC 4 cut(s) 139, 205, 745, 811
BcgI CGANNNNNNTGC 6 cut(s) 208, 242, 478, 512, 814, 848
BciT130I CCWGG 2 cut(s) 111, 717
BcnI CCSGG 2 cut(s) 53, 659
BfaI CTAG 2 cut(s) 318, 432
BisI GCNGC 2 cut(s) 468, 485
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 2 cut(s) 469, 486
Bme1390I CCNGG 4 cut(s) 53, 111, 659, 717
Bme18I GGWCC 6 cut(s) 19, 55, 73, 625, 661, 679
BmgT120I GGNCC 6 cut(s) 19, 55, 73, 625, 661, 679
BmiI GGNNCC 5 cut(s) 56, 153, 483, 662, 759
BmrFI CCNGG 4 cut(s) 53, 111, 659, 717
BmrI ACTGGG 2 cut(s) 60, 666
BmsI GCATC 1 cut(s) 608
BmuI ACTGGG 2 cut(s) 60, 666
BpiI GAAGAC 1 cut(s) 599
BplI GAGNNNNNCTC 6 cut(s) 161, 193, 296, 328, 767, 799
Bpu10I CCTNAGC 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 540
BpuMI CCSGG 2 cut(s) 53, 659
BsaJI CCNNGG 3 cut(s) 110, 488, 716
BsaWI WCCGGW 2 cut(s) 154, 760
BsaXI ACNNNNNCTCC 6 cut(s) 144, 174, 356, 386, 750, 780
Bsc4I CCNNNNNNNGG 8 cut(s) 51, 52, 111, 148, 657, 658, 717, 754
Bse118I RCCGGY 2 cut(s) 251, 857
Bse1I ACTGG 4 cut(s) 21, 66, 627, 672
BseBI CCWGG 2 cut(s) 111, 717
BseDI CCNNGG 3 cut(s) 110, 488, 716
BseGI GGATG 6 cut(s) 15, 150, 238, 621, 756, 844
BseLI CCNNNNNNNGG 8 cut(s) 51, 52, 111, 148, 657, 658, 717, 754
BseMII CTCAG 4 cut(s) 326, 491, 554, 578
BseNI ACTGG 4 cut(s) 21, 66, 627, 672
BseRI GAGGAG 2 cut(s) 377, 522
BseX3I CGGCCG 1 cut(s) 770
BseYI CCCAGC 1 cut(s) 391
Bsh1285I CGRYCG 3 cut(s) 62, 668, 773
BshFI GGCC 7 cut(s) 38, 166, 251, 470, 644, 772, 857
BsiEI CGRYCG 3 cut(s) 62, 668, 773
BslFI GGGAC 3 cut(s) 28, 442, 634
BslI CCNNNNNNNGG 8 cut(s) 51, 52, 111, 148, 657, 658, 717, 754
BsmFI GGGAC 3 cut(s) 28, 442, 634
BsnI GGCC 7 cut(s) 38, 166, 251, 470, 644, 772, 857
Bsp1286I GDGCHC 2 cut(s) 202, 808
Bsp143I GATC 6 cut(s) 48, 80, 157, 654, 686, 763
Bsp1720I GCTNAGC 1 cut(s) 540
BspANI GGCC 7 cut(s) 38, 166, 251, 470, 644, 772, 857
BspCNI CTCAG 4 cut(s) 327, 492, 553, 577
BspLI GGNNCC 5 cut(s) 56, 153, 483, 662, 759
BspPI GGATC 4 cut(s) 43, 165, 649, 771
BsrBI CCGCTC 2 cut(s) 177, 783
BsrFI RCCGGY 2 cut(s) 251, 857
BsrI ACTGG 4 cut(s) 21, 66, 627, 672
BssAI RCCGGY 2 cut(s) 251, 857
BssECI CCNNGG 3 cut(s) 110, 488, 716
BssMI GATC 6 cut(s) 48, 80, 157, 654, 686, 763
Bst2UI CCWGG 2 cut(s) 111, 717
Bst6I CTCTTC 1 cut(s) 601
BstC8I GCNNGC 6 cut(s) 26, 36, 120, 632, 642, 726
BstDEI CTNAG 6 cut(s) 207, 335, 500, 540, 564, 813
BstF5I GGATG 6 cut(s) 15, 150, 238, 621, 756, 844
BstHHI GCGC 2 cut(s) 89, 695
BstKTI GATC 6 cut(s) 51, 83, 160, 657, 689, 766
BstMBI GATC 6 cut(s) 48, 80, 157, 654, 686, 763
BstMCI CGRYCG 3 cut(s) 62, 668, 773
BstNI CCWGG 2 cut(s) 111, 717
BstSCI CCNGG 4 cut(s) 51, 109, 657, 715
BstV2I GAAGAC 1 cut(s) 599
BstX2I RGATCY 2 cut(s) 157, 763
BstYI RGATCY 2 cut(s) 157, 763
BstZI CGGCCG 1 cut(s) 770
BsuRI GGCC 7 cut(s) 38, 166, 251, 470, 644, 772, 857
BtsCI GGATG 6 cut(s) 15, 150, 238, 621, 756, 844
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 6 cut(s) 26, 36, 120, 632, 642, 726
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 2 cut(s) 89, 695
Cfr10I RCCGGY 2 cut(s) 251, 857
Cfr13I GGNCC 6 cut(s) 19, 55, 73, 625, 661, 679
Csp6I GTAC 2 cut(s) 172, 778
CviAII CATG 1 cut(s) 448
CviQI GTAC 2 cut(s) 172, 778
DdeI CTNAG 6 cut(s) 207, 335, 500, 540, 564, 813
DpnI GATC 6 cut(s) 50, 82, 159, 656, 688, 765
DpnII GATC 6 cut(s) 48, 80, 157, 654, 686, 763
DrdI GACNNNNNNGTC 2 cut(s) 66, 672
DseDI GACNNNNNNGTC 2 cut(s) 66, 672
EaeI YGGCCR 4 cut(s) 36, 164, 642, 770
EagI CGGCCG 1 cut(s) 770
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
EclXI CGGCCG 1 cut(s) 770
Eco24I GRGCYC 2 cut(s) 202, 808
Eco47I GGWCC 6 cut(s) 19, 55, 73, 625, 661, 679
Eco52I CGGCCG 1 cut(s) 770
EcoRI GAATTC 2 cut(s) 224, 830
EcoRII CCWGG 2 cut(s) 109, 715
EcoT38I GRGCYC 2 cut(s) 202, 808
FaeI CATG 1 cut(s) 451
FaiI YATR 6 cut(s) 303, 348, 449, 495, 497, 509
FaqI GGGAC 3 cut(s) 28, 442, 634
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 2 cut(s) 468, 485
FokI GGATG 6 cut(s) 22, 157, 245, 628, 763, 851
FriOI GRGCYC 2 cut(s) 202, 808
Fsp4HI GCNGC 2 cut(s) 468, 485
FspBI CTAG 2 cut(s) 318, 432
GlaI GCGC 2 cut(s) 88, 694
GluI GCNGC 2 cut(s) 468, 485
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 7 cut(s) 38, 166, 251, 470, 644, 772, 857
HhaI GCGC 2 cut(s) 89, 695
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 2 cut(s) 87, 693
HinP1I GCGC 2 cut(s) 87, 693
HinfI GANTC 2 cut(s) 297, 407
HphI GGTGA 1 cut(s) 586
Hpy188I TCNGA 5 cut(s) 59, 80, 567, 665, 686
Hpy188III TCNNGA 1 cut(s) 603
HpyAV CCTTC 1 cut(s) 582
HpyCH4V TGCA 2 cut(s) 100, 706
HpyF3I CTNAG 6 cut(s) 207, 335, 500, 540, 564, 813
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 2 cut(s) 87, 693
Kzo9I GATC 6 cut(s) 48, 80, 157, 654, 686, 763
LmnI GCTCC 3 cut(s) 182, 481, 788
LweI GCATC 1 cut(s) 608
MaeI CTAG 2 cut(s) 318, 432
MalI GATC 6 cut(s) 50, 82, 159, 656, 688, 765
MbiI CCGCTC 2 cut(s) 177, 783
MboI GATC 6 cut(s) 48, 80, 157, 654, 686, 763
MboII GAAGA 6 cut(s) 248, 333, 352, 604, 618, 854
MflI RGATCY 2 cut(s) 157, 763
MhlI GDGCHC 2 cut(s) 202, 808
MlsI TGGCCA 2 cut(s) 38, 644
MluCI AATT 5 cut(s) 224, 268, 797, 830, 874
MluNI TGGCCA 2 cut(s) 38, 644
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 2 cut(s) 82, 688
Mox20I TGGCCA 2 cut(s) 38, 644
MscI TGGCCA 2 cut(s) 38, 644
MseI TTAA 1 cut(s) 381
Msp20I TGGCCA 2 cut(s) 38, 644
MspA1I CMGCKG 2 cut(s) 34, 640
MspR9I CCNGG 4 cut(s) 53, 111, 659, 717
MvaI CCWGG 2 cut(s) 111, 717
NciI CCSGG 2 cut(s) 53, 659
NdeII GATC 6 cut(s) 48, 80, 157, 654, 686, 763
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 5 cut(s) 56, 153, 483, 662, 759
NmeAIII GCCGAG 1 cut(s) 513
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 2 cut(s) 469, 486
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Psp6I CCWGG 2 cut(s) 109, 715
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 2 cut(s) 109, 715
PspN4I GGNNCC 5 cut(s) 56, 153, 483, 662, 759
PspPI GGNCC 6 cut(s) 19, 55, 73, 625, 661, 679
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 2 cut(s) 157, 763
RsaI GTAC 2 cut(s) 173, 779
RsaNI GTAC 2 cut(s) 172, 778
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 2 cut(s) 468, 485
Sau3AI GATC 6 cut(s) 48, 80, 157, 654, 686, 763
Sau96I GGNCC 6 cut(s) 19, 55, 73, 625, 661, 679
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 4 cut(s) 53, 111, 659, 717
SduI GDGCHC 2 cut(s) 202, 808
SetI ASST 5 cut(s) 95, 393, 441, 494, 701
SfaNI GCATC 1 cut(s) 608
SinI GGWCC 6 cut(s) 19, 55, 73, 625, 661, 679
Sse9I AATT 5 cut(s) 224, 268, 797, 830, 874
SspMI CTAG 2 cut(s) 318, 432
StyD4I CCNGG 4 cut(s) 51, 109, 657, 715
TaqI TCGA 2 cut(s) 441, 604
TasI AATT 5 cut(s) 224, 268, 797, 830, 874
TauI GCSGC 2 cut(s) 470, 487
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 430
TspDTI ATGAA 4 cut(s) 26, 249, 632, 855
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 6 cut(s) 19, 55, 73, 625, 661, 679
XapI RAATTY 2 cut(s) 224, 830
XspI CTAG 2 cut(s) 318, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.