FvH4_2g37430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016192
Physical Location & Seq
Reverse (-)
27281660 .. 27282957
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37430.t1

Sequence Viewer

Length: 660 bp
ATGTCAAGGATGAAACTCGATCGCAAGCCTCCGCTCGCCAAGTCCCCGACCCGTCTCCGACCACCCAGCCGCGTCCTCCGATCAGGCTCAACCTCCCTCCAAACCCCACCAGGGTCGCTGACGAAATCCCAGAAACCGAGCCGAATGTGGGACATGGAGGAGCCGGATCTCCGGCCGGAATACCGCTCCATTTCCTGCGAACTGAGGGCTCTGGCGAAGATGGTAGGCAAGGAATTCGGGGATGAAGATTGCGAAAAGGCTGGTTCGGGGTTTCGTGAATCTGTGAGTGCTAATCCAAGCCCTTTGTTTGAGAGGGGGAAATTGTATGAGGAGTATTCTGCTAGGAGGAATGAGAGGCTGAGGAAGAAGTATGGCGGAACAGGGGAGGAGTTCAAGTCTGCGTTTAAGCAGAAGCTGGGGGTTGCGGTGGAGTCTGCGAAGCGAGGCAGTGGGACTAGGAAGCTGGAAAGTATGAGGAAATCTGTGTCTGCTGCGTATTCTGTGGAGAGGACAAGCGAGACGCCGAGGTATATGCTGAGGAGTATGAGCAAGGAGAATAAGAAGCCTCCTCTGGCTCAGCCCCCTGCTGCTCTGTATTCTGCTCAGAGATCAAGTGTTGGAGGTGGAAGGAAGACAGCGTCTCGAAGAGTTGGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.47

Weight (kDa)

10.32

Isoelectric Point (pI)

63.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 34, 186
AccII CGCG 1 cut(s) 72
AciI CCGC 5 cut(s) 32, 70, 184, 375, 425
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 521
AfiI CCNNNNNNNGG 2 cut(s) 111, 148
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 415, 463
AluI AGCT 2 cut(s) 415, 463
Alw26I GTCTC 3 cut(s) 59, 512, 645
AlwI GGATC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 415
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 491, 587
ApoI RAATTY 1 cut(s) 233
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 638
BbvCI CCTCAGC 2 cut(s) 359, 536
BbvI GCAGC 2 cut(s) 478, 574
BccI CCATC 1 cut(s) 214
BcgI CGANNNNNNTGC 4 cut(s) 217, 251, 514, 548
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 59, 512, 645
BfaI CTAG 2 cut(s) 342, 456
BisI GCNGC 3 cut(s) 70, 492, 588
BlpI GCTNAGC 1 cut(s) 576
BlsI GCNGC 3 cut(s) 71, 493, 589
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 638
Bpu10I CCTNAGC 2 cut(s) 359, 536
Bpu1102I GCTNAGC 1 cut(s) 576
BsaHI GRCGYC 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 110, 524
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 148
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 110, 524
BseGI GGATG 2 cut(s) 15, 247
BseLI CCNNNNNNNGG 2 cut(s) 111, 148
BseMII CTCAG 5 cut(s) 194, 350, 527, 590, 617
BseRI GAGGAG 5 cut(s) 173, 344, 401, 553, 558
BseX3I CGGCCG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 478, 574
BseYI CCCAGC 2 cut(s) 65, 415
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 2 cut(s) 22, 176
BshFI GGCC 1 cut(s) 175
BsiEI CGRYCG 2 cut(s) 22, 176
BsiSI CCGG 3 cut(s) 164, 172, 176
BslFI GGGAC 3 cut(s) 28, 164, 466
BslI CCNNNNNNNGG 2 cut(s) 111, 148
BsmAI GTCTC 3 cut(s) 59, 512, 645
BsmBI CGTCTC 3 cut(s) 59, 512, 645
BsmFI GGGAC 3 cut(s) 28, 164, 466
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 4 cut(s) 19, 80, 166, 608
Bsp1720I GCTNAGC 1 cut(s) 576
BspACI CCGC 5 cut(s) 32, 70, 184, 375, 425
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 5 cut(s) 195, 351, 528, 589, 616
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 1 cut(s) 174
BsrBI CCGCTC 2 cut(s) 34, 186
BssECI CCNNGG 2 cut(s) 110, 524
BssMI GATC 4 cut(s) 19, 80, 166, 608
BssNI GRCGYC 1 cut(s) 521
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 640
BstACI GRCGYC 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 26, 36
BstDEI CTNAG 5 cut(s) 203, 359, 536, 576, 603
BstF5I GGATG 2 cut(s) 15, 247
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 4 cut(s) 22, 83, 169, 611
BstMAI GTCTC 3 cut(s) 59, 512, 645
BstMBI GATC 4 cut(s) 19, 80, 166, 608
BstMCI CGRYCG 2 cut(s) 22, 176
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 478, 574
BstV2I GAAGAC 1 cut(s) 638
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZI CGGCCG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 2 cut(s) 15, 247
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 26, 36
CaiI CAGNNNCTG 1 cut(s) 415
CseI GACGC 3 cut(s) 61, 529, 627
CviAII CATG 1 cut(s) 154
DdeI CTNAG 5 cut(s) 203, 359, 536, 576, 603
DpnI GATC 4 cut(s) 21, 82, 168, 610
DpnII GATC 4 cut(s) 19, 80, 166, 608
EaeI YGGCCR 1 cut(s) 173
EagI CGGCCG 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 640
EciI GGCGGA 1 cut(s) 390
EclXI CGGCCG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 211
Eco52I CGGCCG 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 211
Esp3I CGTCTC 3 cut(s) 59, 512, 645
FaeI CATG 1 cut(s) 157
FaiI YATR 7 cut(s) 155, 327, 372, 473, 531, 533, 545
FaqI GGGAC 3 cut(s) 28, 164, 466
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 70, 492, 588
FokI GGATG 2 cut(s) 22, 254
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 3 cut(s) 70, 492, 588
FspBI CTAG 2 cut(s) 342, 456
GluI GCNGC 3 cut(s) 70, 492, 588
GsaI CCCAGC 2 cut(s) 69, 419
HaeIII GGCC 1 cut(s) 175
HapII CCGG 3 cut(s) 164, 172, 176
HgaI GACGC 3 cut(s) 61, 529, 627
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 1 cut(s) 157
HinfI GANTC 2 cut(s) 278, 431
HpaII CCGG 3 cut(s) 164, 172, 176
Hpy188I TCNGA 3 cut(s) 59, 80, 606
Hpy188III TCNNGA 2 cut(s) 275, 642
HpyAV CCTTC 1 cut(s) 621
HpyF3I CTNAG 5 cut(s) 203, 359, 536, 576, 603
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 4 cut(s) 19, 80, 166, 608
LmnI GCTCC 2 cut(s) 160, 191
Lsp1109I GCAGC 2 cut(s) 478, 574
MaeI CTAG 2 cut(s) 342, 456
MalI GATC 4 cut(s) 21, 82, 168, 610
MbiI CCGCTC 2 cut(s) 34, 186
MboI GATC 4 cut(s) 19, 80, 166, 608
MboII GAAGA 5 cut(s) 229, 257, 376, 643, 657
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 2 cut(s) 233, 320
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 2 cut(s) 82, 598
MseI TTAA 1 cut(s) 405
MspI CCGG 3 cut(s) 164, 172, 176
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 72
NdeII GATC 4 cut(s) 19, 80, 166, 608
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 162
NmeAIII GCCGAG 1 cut(s) 549
PfeI GAWTC 1 cut(s) 278
PflFI GACNNNGTC 1 cut(s) 637
PkrI GCNGC 3 cut(s) 71, 493, 589
Ple19I CGATCG 1 cut(s) 22
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 2 cut(s) 65, 415
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 637
PvuI CGATCG 1 cut(s) 22
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 3 cut(s) 70, 492, 588
Sau3AI GATC 4 cut(s) 19, 80, 166, 608
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 211
SetI ASST 5 cut(s) 95, 417, 465, 530, 625
Sse9I AATT 2 cut(s) 233, 320
SsiI CCGC 5 cut(s) 32, 70, 184, 375, 425
SspMI CTAG 2 cut(s) 342, 456
StyD4I CCNGG 1 cut(s) 109
TaqI TCGA 2 cut(s) 18, 643
TasI AATT 2 cut(s) 233, 320
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 454
TseI GCWGC 2 cut(s) 491, 587
TspDTI ATGAA 2 cut(s) 26, 258
TspRI CASTG 1 cut(s) 454
Tth111I GACNNNGTC 1 cut(s) 637
XapI RAATTY 1 cut(s) 233
XspI CTAG 2 cut(s) 342, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.