Rw6G038450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016192
Physical Location & Seq
Forward (+)
62600421 .. 62601561
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038450.1

Sequence Viewer

Length: 633 bp
ATGTCAAGGATGAAACTGGACCGCAAGCCTCCGCTGGCCAAGTCCCCGATCCGGGTCCGACCGCCCAGTCTGGTCCTCCGATCAGGCGCAACCTCTCTGCAAACCCCACCAGGGTCGCTGACGAAATCCCAGAAACCGAGCCGGATGGAGGAACCGGATCTCCGGCCAGAGTACCGCTCCATTTCCTGCGAGTTGAGGGCTCTGGCTAAGATGGTTGGCAAGGAATTCGGGGATGAAGATTGCGAAAAGGCCGGTGGGGTTCGTGCTAATTCAAGCCCTTTGTTTGAGAGGGGGAGATTCTATGAGGAATACTCTGCTAGAAGAAATGAGAGGCTGAGGAAGAAGTATGGCGGAACAGGGGAGGAGTTCAAGTCTGCGTTTAAGCAGAAGCTGGGGGTTGCGGTGGAGTCTGCGAAGCGAGGCAGTGGGACTAGGAAGCTTGAAAGCATGAGGAAATCGGTGTCTGCTGCCTACTCGGTGGAGAGGACAAGCGAGCCGCCGAGGTATATGCTGAGAAGTATGAGCAAGGAGAATAAGAAGCCTCCTCTGGCTCAGCCTCCTGCTCTGTATTCTGCTCAGAAATCGGTGATAGGAGGGGGAAGGAAGACAGCATCTCAAAGAGTTGGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.39

Weight (kDa)

10.32

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 177
AciI CCGC 7 cut(s) 22, 32, 62, 175, 351, 401, 497
AclWI GGATC 2 cut(s) 43, 165
AcoI YGGCCR 2 cut(s) 36, 164
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
AgsI TTSAA 3 cut(s) 273, 370, 443
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 2 cut(s) 391, 439
AluI AGCT 2 cut(s) 391, 439
AlwI GGATC 2 cut(s) 43, 165
AlwNI CAGNNNCTG 1 cut(s) 391
AoxI GGCC 3 cut(s) 36, 164, 249
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 3 cut(s) 19, 55, 73
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 598
AvaII GGWCC 3 cut(s) 19, 55, 73
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 611
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 454
BccI CCATC 2 cut(s) 139, 205
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 490, 524
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 53
BfaI CTAG 2 cut(s) 318, 432
BisI GCNGC 2 cut(s) 468, 497
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 2 cut(s) 469, 498
Bme1390I CCNGG 2 cut(s) 53, 111
Bme18I GGWCC 3 cut(s) 19, 55, 73
BmgT120I GGNCC 3 cut(s) 19, 55, 73
BmiI GGNNCC 2 cut(s) 56, 153
BmrFI CCNGG 2 cut(s) 53, 111
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 620
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 611
BplI GAGNNNNNCTC 4 cut(s) 161, 193, 296, 328
Bpu10I CCTNAGC 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 552
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 110, 500
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 356, 386
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 21, 66
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 110, 500
BseGI GGATG 3 cut(s) 15, 150, 238
BseLI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
BseMII CTCAG 4 cut(s) 326, 503, 566, 590
BseNI ACTGG 2 cut(s) 21, 66
BseRI GAGGAG 2 cut(s) 377, 534
BseXI GCAGC 1 cut(s) 454
BseYI CCCAGC 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 3 cut(s) 38, 166, 251
BsiEI CGRYCG 1 cut(s) 62
BsiSI CCGG 5 cut(s) 52, 142, 155, 163, 252
BslFI GGGAC 2 cut(s) 28, 442
BslI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
BsmFI GGGAC 2 cut(s) 28, 442
BsnI GGCC 3 cut(s) 38, 166, 251
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 3 cut(s) 48, 80, 157
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 7 cut(s) 22, 32, 62, 175, 351, 401, 497
BspANI GGCC 3 cut(s) 38, 166, 251
BspCNI CTCAG 4 cut(s) 327, 504, 565, 589
BspLI GGNNCC 2 cut(s) 56, 153
BspPI GGATC 2 cut(s) 43, 165
BsrBI CCGCTC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 2 cut(s) 21, 66
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 110, 500
BssMI GATC 3 cut(s) 48, 80, 157
Bst2UI CCWGG 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 26, 36, 494
BstDEI CTNAG 5 cut(s) 207, 335, 512, 552, 576
BstF5I GGATG 3 cut(s) 15, 150, 238
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 3 cut(s) 51, 83, 160
BstMBI GATC 3 cut(s) 48, 80, 157
BstMCI CGRYCG 1 cut(s) 62
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 51, 109
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 611
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 3 cut(s) 38, 166, 251
BtsCI GGATG 3 cut(s) 15, 150, 238
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 3 cut(s) 26, 36, 494
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 3 cut(s) 19, 55, 73
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 448
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 5 cut(s) 207, 335, 512, 552, 576
DpnI GATC 3 cut(s) 50, 82, 159
DpnII GATC 3 cut(s) 48, 80, 157
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 2 cut(s) 36, 164
EciI GGCGGA 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 202
Eco47I GGWCC 3 cut(s) 19, 55, 73
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 202
FaeI CATG 1 cut(s) 451
FaiI YATR 6 cut(s) 303, 348, 449, 507, 509, 521
FaqI GGGAC 2 cut(s) 28, 442
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 2 cut(s) 468, 497
FokI GGATG 3 cut(s) 22, 157, 245
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 468, 497
FspBI CTAG 2 cut(s) 318, 432
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 468, 497
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 3 cut(s) 38, 166, 251
HapII CCGG 5 cut(s) 52, 142, 155, 163, 252
HhaI GCGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 2 cut(s) 297, 407
HpaII CCGG 5 cut(s) 52, 142, 155, 163, 252
HphI GGTGA 1 cut(s) 598
Hpy188I TCNGA 3 cut(s) 59, 80, 579
HpyAV CCTTC 1 cut(s) 594
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 207, 335, 512, 552, 576
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 3 cut(s) 48, 80, 157
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 1 cut(s) 620
MaeI CTAG 2 cut(s) 318, 432
MalI GATC 3 cut(s) 50, 82, 159
MbiI CCGCTC 1 cut(s) 177
MboI GATC 3 cut(s) 48, 80, 157
MboII GAAGA 4 cut(s) 248, 333, 352, 616
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 2 cut(s) 224, 268
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 5 cut(s) 52, 142, 155, 163, 252
MspR9I CCNGG 2 cut(s) 53, 111
MvaI CCWGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 53
NdeII GATC 3 cut(s) 48, 80, 157
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 2 cut(s) 56, 153
NmeAIII GCCGAG 1 cut(s) 525
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 2 cut(s) 469, 498
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 56, 153
PspPI GGNCC 3 cut(s) 19, 55, 73
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 2 cut(s) 468, 497
Sau3AI GATC 3 cut(s) 48, 80, 157
Sau96I GGNCC 3 cut(s) 19, 55, 73
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 53, 111
SduI GDGCHC 1 cut(s) 202
SetI ASST 4 cut(s) 95, 393, 441, 506
SfaNI GCATC 1 cut(s) 620
SinI GGWCC 3 cut(s) 19, 55, 73
Sse9I AATT 2 cut(s) 224, 268
SsiI CCGC 7 cut(s) 22, 32, 62, 175, 351, 401, 497
SspMI CTAG 2 cut(s) 318, 432
StyD4I CCNGG 2 cut(s) 51, 109
TasI AATT 2 cut(s) 224, 268
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 430
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 2 cut(s) 26, 249
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 3 cut(s) 19, 55, 73
XapI RAATTY 1 cut(s) 224
XspI CTAG 2 cut(s) 318, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.