Rroxscaffold_7G00163870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016192
Physical Location & Seq
Reverse (-)
6023562 .. 6024555
994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163870.1

Sequence Viewer

Length: 654 bp
ATGTCGAGGATGAAACTGGACCGCAAGCCTCCGCTGGCCAAGTCCCCGATCCGGGTCCGACCGCCCAGTCGGGTCCTCCGATCAGGCGCAACCTCTCTGCAAACCCCACCAGGGTCGCTGACGAAATCCCAGAAACCGAGCCGGATGTGGGACATGGAGGAACCGGATCTCCGGCCAGAGTACCGCTCCATTTCCTTCGAATTGAGGGCTCTGGCTAAGATGGTCGGCAAGGAATTCGGGGATGAAGATTGCGAAAAGGCCGGTGGGGTTCGTAAGTCAGTGAGTGCTAATTCAAGCCCTTTGTTTGAGAGGGGGAGATTCTATGAGGAATACTCTGCTAGAAGAAATGAGAGGCTGAGGAAGAAGTATGGCGGAACAGGGGAGGAGTTCAAGTCTGCGTTTAAGCAGAAGCTGGGGGTTGCGGTGGAGTCTGCGAAGCGAGGCAGTGGGACTAGGAAGCTTGAAAGCATGAGGAAATCGGTGTCTGCGGCCTACTCGGTGGAGAGGACAAGCGAGCCGCCGAGGTATATGCTGAGAAGTATGAGCAAGGAGAATAAGAAGCCTCCTCTGGCTCAGCCTCCTGCTCTGTATTCTGCTCAGAAATCGGTGTTAGGAGGGGGAAGGAAGACAGCATCTAGAAGAGTTGGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.34

Weight (kDa)

10.46

Isoelectric Point (pI)

62.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 186
AciI CCGC 8 cut(s) 22, 32, 62, 184, 372, 422, 488, 518
AclWI GGATC 2 cut(s) 43, 174
AcoI YGGCCR 2 cut(s) 36, 173
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
AgsI TTSAA 3 cut(s) 294, 391, 464
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 2 cut(s) 412, 460
AluI AGCT 2 cut(s) 412, 460
AlwI GGATC 2 cut(s) 43, 174
AlwNI CAGNNNCTG 1 cut(s) 412
AoxI GGCC 4 cut(s) 36, 173, 258, 489
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 3 cut(s) 19, 55, 73
AsuC2I CCSGG 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 198
AvaII GGWCC 3 cut(s) 19, 55, 73
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 632
BbvCI CCTCAGC 1 cut(s) 356
BccI CCATC 1 cut(s) 214
BcgI CGANNNNNNTGC 4 cut(s) 217, 251, 511, 545
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 53
BfaI CTAG 3 cut(s) 339, 453, 636
BisI GCNGC 2 cut(s) 489, 518
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 2 cut(s) 490, 519
Bme1390I CCNGG 2 cut(s) 53, 111
Bme18I GGWCC 3 cut(s) 19, 55, 73
BmgT120I GGNCC 3 cut(s) 19, 55, 73
BmiI GGNNCC 3 cut(s) 56, 74, 162
BmrFI CCNGG 2 cut(s) 53, 111
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 632
BplI GAGNNNNNCTC 4 cut(s) 170, 202, 317, 349
Bpu10I CCTNAGC 1 cut(s) 356
Bpu1102I GCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 110, 521
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 377, 407
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 21, 66
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 110, 521
BseGI GGATG 3 cut(s) 15, 150, 247
BseLI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
BseMII CTCAG 4 cut(s) 347, 524, 587, 611
BseNI ACTGG 2 cut(s) 21, 66
BseRI GAGGAG 2 cut(s) 398, 555
BseYI CCCAGC 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 4 cut(s) 38, 175, 260, 491
BsiEI CGRYCG 1 cut(s) 62
BsiSI CCGG 5 cut(s) 52, 142, 164, 172, 261
BslFI GGGAC 3 cut(s) 28, 164, 463
BslI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 148
BsmFI GGGAC 3 cut(s) 28, 164, 463
BsnI GGCC 4 cut(s) 38, 175, 260, 491
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 48, 80, 166
Bsp1720I GCTNAGC 1 cut(s) 573
BspACI CCGC 8 cut(s) 22, 32, 62, 184, 372, 422, 488, 518
BspANI GGCC 4 cut(s) 38, 175, 260, 491
BspCNI CTCAG 4 cut(s) 348, 525, 586, 610
BspLI GGNNCC 3 cut(s) 56, 74, 162
BspPI GGATC 2 cut(s) 43, 174
BspT104I TTCGAA 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 2 cut(s) 21, 66
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 110, 521
BssMI GATC 3 cut(s) 48, 80, 166
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 634
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 26, 36, 515
BstDEI CTNAG 5 cut(s) 216, 356, 533, 573, 597
BstF5I GGATG 3 cut(s) 15, 150, 247
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 3 cut(s) 51, 83, 169
BstMBI GATC 3 cut(s) 48, 80, 166
BstMCI CGRYCG 1 cut(s) 62
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 51, 109
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 4 cut(s) 38, 175, 260, 491
BtsCI GGATG 3 cut(s) 15, 150, 247
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 2 cut(s) 285, 451
Cac8I GCNNGC 3 cut(s) 26, 36, 515
CaiI CAGNNNCTG 1 cut(s) 412
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 3 cut(s) 19, 55, 73
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 154, 469
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 5 cut(s) 216, 356, 533, 573, 597
DpnI GATC 3 cut(s) 50, 82, 168
DpnII GATC 3 cut(s) 48, 80, 166
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 2 cut(s) 36, 173
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
EciI GGCGGA 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 211
Eco47I GGWCC 3 cut(s) 19, 55, 73
EcoO109I RGGNCCY 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 211
FaeI CATG 2 cut(s) 157, 472
FaiI YATR 7 cut(s) 155, 324, 369, 470, 528, 530, 542
FaqI GGGAC 3 cut(s) 28, 164, 463
FatI CATG 2 cut(s) 153, 468
Fnu4HI GCNGC 2 cut(s) 489, 518
FokI GGATG 3 cut(s) 22, 157, 254
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 2 cut(s) 489, 518
FspBI CTAG 3 cut(s) 339, 453, 636
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 489, 518
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 4 cut(s) 38, 175, 260, 491
HapII CCGG 5 cut(s) 52, 142, 164, 172, 261
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 157, 472
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 318, 428
HpaII CCGG 5 cut(s) 52, 142, 164, 172, 261
Hpy188I TCNGA 3 cut(s) 59, 80, 600
Hpy188III TCNNGA 1 cut(s) 636
HpyAV CCTTC 2 cut(s) 205, 615
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 216, 356, 533, 573, 597
Hsp92II CATG 2 cut(s) 157, 472
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 3 cut(s) 48, 80, 166
LmnI GCTCC 1 cut(s) 191
LweI GCATC 1 cut(s) 641
MaeI CTAG 3 cut(s) 339, 453, 636
MalI GATC 3 cut(s) 50, 82, 168
MbiI CCGCTC 1 cut(s) 186
MboI GATC 3 cut(s) 48, 80, 166
MboII GAAGA 5 cut(s) 257, 354, 373, 637, 651
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 211
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 3 cut(s) 200, 233, 289
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 402
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 5 cut(s) 52, 142, 164, 172, 261
MspR9I CCNGG 2 cut(s) 53, 111
MvaI CCWGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 53
NdeII GATC 3 cut(s) 48, 80, 166
NlaIII CATG 2 cut(s) 157, 472
NlaIV GGNNCC 3 cut(s) 56, 74, 162
NmeAIII GCCGAG 1 cut(s) 546
NspV TTCGAA 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 2 cut(s) 490, 519
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 3 cut(s) 56, 74, 162
PspPI GGNCC 3 cut(s) 19, 55, 73
PspPPI RGGWCCY 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 2 cut(s) 489, 518
Sau3AI GATC 3 cut(s) 48, 80, 166
Sau96I GGNCC 3 cut(s) 19, 55, 73
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 2 cut(s) 53, 111
SduI GDGCHC 1 cut(s) 211
SetI ASST 4 cut(s) 95, 414, 462, 527
SfaNI GCATC 1 cut(s) 641
SfuI TTCGAA 1 cut(s) 198
SinI GGWCC 3 cut(s) 19, 55, 73
Sse9I AATT 3 cut(s) 200, 233, 289
SsiI CCGC 8 cut(s) 22, 32, 62, 184, 372, 422, 488, 518
SspMI CTAG 3 cut(s) 339, 453, 636
StyD4I CCNGG 2 cut(s) 51, 109
TaqI TCGA 2 cut(s) 5, 198
TasI AATT 3 cut(s) 200, 233, 289
TauI GCSGC 2 cut(s) 491, 520
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 285, 451
TspDTI ATGAA 2 cut(s) 26, 258
TspRI CASTG 2 cut(s) 285, 451
VpaK11BI GGWCC 3 cut(s) 19, 55, 73
XapI RAATTY 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 635
XspI CTAG 3 cut(s) 339, 453, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.