Rh6CG455900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016192
Physical Location & Seq
Forward (+)
63138289 .. 63139558
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG455900.1

Sequence Viewer

Length: 633 bp
ATGTCAAGGATGAAACTGGACCGCAAGCCTCCGCTGGCCAAGTCCCCGATCCGGGTCCGACCGCCCAGTCGGGTCCTCCGATCAGGCCCAACCTCTCTGCAAACCCCACCAGGGTCCCAGAAACCGAGCCGGATGGAGGAACCGGATCTCCGGCCAGAGTACCGCTCCATTTCCTGCGAATTGAGGGCTCTGGCTAAGATGGTCGGCAAGGAATTCGGGGATGAAGATTGCGAAAAGGCCAAGGCCGGTGGGGTTCGTAAATCAGTGAGTGCTAATTCAAGCCCTTTGTTTGAGAGGGGGAGATTCTATGAGGAATACTCTGCTAGAAGAAATGAGAGGCTGAGGAAGAAGTATGGCGGAACAGGAACAGGGGAGGAGTTTAAGTCTGCGTTTAAGCAGAAGCTGGGGGTTGCGGTGGAGTCTGCGAAGCGAGGCAGTGGGACTAGGAAGCTGGAAAGCATGAGGAAATCAGTGTCTGCGGCCTACTCGGTGGAGAGGACAAGCGAGACGCCGAGGTATATGCTGAGGAGTATGAGCAAGGAGAATAAGAAGCCTCCTCTGGCTCAGCCTCCTGCTCTGTATTCTGCTCAGAAATCGGTGATAGGAACAGCATCTCGAAGAGTTGGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.42

Weight (kDa)

10.38

Isoelectric Point (pI)

61.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016192)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42330
fragaria_vesca FvH4_2g37430
prunus_persica Prupe.1G354300_v2.0.a1
pyrus_communis pycom08g00170
rosa_chinensis RchiOBHm_Chr6g0304291
rosa_laevigata RLG00000010994
rosa_multiflora Rmu_sc0001652.1_g000001 Rmu_ssc0000218.1_g000035
rosa_roxburghii Rroxscaffold_7G00163870
rosa_rugosa Rorug06G0329700
rosa_samantha Rh6AG443100 Rh6BG459300 Rh6CG455900 Rh6DG442600
rosa_wichuraiana Rw6G038450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AccBSI CCGCTC 1 cut(s) 165
AciI CCGC 7 cut(s) 22, 32, 62, 163, 357, 413, 479
AclWI GGATC 2 cut(s) 43, 153
AcoI YGGCCR 2 cut(s) 36, 152
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 509
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 136
AgsI TTSAA 1 cut(s) 279
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 132, 164
AluBI AGCT 2 cut(s) 403, 451
AluI AGCT 2 cut(s) 403, 451
Alw26I GTCTC 1 cut(s) 500
AlwI GGATC 2 cut(s) 43, 153
AlwNI CAGNNNCTG 2 cut(s) 403, 476
AoxI GGCC 6 cut(s) 36, 85, 152, 237, 243, 480
ApoI RAATTY 1 cut(s) 212
AspS9I GGNCC 5 cut(s) 19, 55, 73, 86, 114
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 610
AvaII GGWCC 4 cut(s) 19, 55, 73, 114
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 1 cut(s) 190
BbvCI CCTCAGC 2 cut(s) 341, 524
BccI CCATC 2 cut(s) 127, 193
BcgI CGANNNNNNTGC 4 cut(s) 196, 230, 502, 536
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 2 cut(s) 324, 444
BisI GCNGC 1 cut(s) 480
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 1 cut(s) 481
Bme1390I CCNGG 2 cut(s) 53, 111
Bme18I GGWCC 4 cut(s) 19, 55, 73, 114
BmgT120I GGNCC 5 cut(s) 19, 55, 73, 86, 114
BmiI GGNNCC 5 cut(s) 56, 74, 115, 116, 141
BmrFI CCNGG 2 cut(s) 53, 111
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 620
BmuI ACTGGG 1 cut(s) 60
BplI GAGNNNNNCTC 4 cut(s) 149, 181, 302, 334
Bpu10I CCTNAGC 2 cut(s) 341, 524
Bpu1102I GCTNAGC 1 cut(s) 564
BpuMI CCSGG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 509
BsaJI CCNNGG 3 cut(s) 110, 240, 512
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 368, 398
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 52, 111, 136
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 21, 66
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 110, 240, 512
BseGI GGATG 3 cut(s) 15, 138, 226
BseLI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 136
BseMII CTCAG 4 cut(s) 332, 515, 578, 602
BseNI ACTGG 2 cut(s) 21, 66
BseRI GAGGAG 3 cut(s) 389, 541, 546
BseYI CCCAGC 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 62
BshFI GGCC 6 cut(s) 38, 87, 154, 239, 245, 482
BsiEI CGRYCG 1 cut(s) 62
BsiSI CCGG 5 cut(s) 52, 130, 143, 151, 246
BslFI GGGAC 3 cut(s) 28, 100, 454
BslI CCNNNNNNNGG 4 cut(s) 51, 52, 111, 136
BsmAI GTCTC 1 cut(s) 500
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 3 cut(s) 28, 100, 454
BsnI GGCC 6 cut(s) 38, 87, 154, 239, 245, 482
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 48, 80, 145
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 7 cut(s) 22, 32, 62, 163, 357, 413, 479
BspANI GGCC 6 cut(s) 38, 87, 154, 239, 245, 482
BspCNI CTCAG 4 cut(s) 333, 516, 577, 601
BspLI GGNNCC 5 cut(s) 56, 74, 115, 116, 141
BspPI GGATC 2 cut(s) 43, 153
BsrBI CCGCTC 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 2 cut(s) 21, 66
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 3 cut(s) 110, 240, 512
BssMI GATC 3 cut(s) 48, 80, 145
BssNI GRCGYC 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 613
BstACI GRCGYC 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 26, 36
BstDEI CTNAG 5 cut(s) 195, 341, 524, 564, 588
BstF5I GGATG 3 cut(s) 15, 138, 226
BstKTI GATC 3 cut(s) 51, 83, 148
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 3 cut(s) 48, 80, 145
BstMCI CGRYCG 1 cut(s) 62
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 51, 109
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 6 cut(s) 38, 87, 154, 239, 245, 482
BtsCI GGATG 3 cut(s) 15, 138, 226
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 3 cut(s) 270, 442, 477
Cac8I GCNNGC 2 cut(s) 26, 36
CaiI CAGNNNCTG 2 cut(s) 403, 476
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 5 cut(s) 19, 55, 73, 86, 114
CseI GACGC 1 cut(s) 517
Csp6I GTAC 1 cut(s) 160
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 1 cut(s) 460
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 5 cut(s) 195, 341, 524, 564, 588
DpnI GATC 3 cut(s) 50, 82, 147
DpnII GATC 3 cut(s) 48, 80, 145
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 2 cut(s) 36, 152
Eam1104I CTCTTC 1 cut(s) 613
EarI CTCTTC 1 cut(s) 613
EciI GGCGGA 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 190
Eco47I GGWCC 4 cut(s) 19, 55, 73, 114
EcoO109I RGGNCCY 2 cut(s) 73, 114
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 1 cut(s) 463
FaiI YATR 6 cut(s) 309, 354, 461, 519, 521, 533
FaqI GGGAC 3 cut(s) 28, 100, 454
FatI CATG 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 3 cut(s) 22, 145, 233
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 2 cut(s) 324, 444
GluI GCNGC 1 cut(s) 480
GsaI CCCAGC 1 cut(s) 407
HaeIII GGCC 6 cut(s) 38, 87, 154, 239, 245, 482
HapII CCGG 5 cut(s) 52, 130, 143, 151, 246
HgaI GACGC 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 509
Hin1II CATG 1 cut(s) 463
HinfI GANTC 2 cut(s) 303, 419
HpaII CCGG 5 cut(s) 52, 130, 143, 151, 246
HphI GGTGA 1 cut(s) 610
Hpy188I TCNGA 3 cut(s) 59, 80, 591
Hpy188III TCNNGA 1 cut(s) 615
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 195, 341, 524, 564, 588
Hsp92I GRCGYC 1 cut(s) 509
Hsp92II CATG 1 cut(s) 463
KflI GGGWCCC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 48, 80, 145
LmnI GCTCC 1 cut(s) 170
LweI GCATC 1 cut(s) 620
MaeI CTAG 2 cut(s) 324, 444
MalI GATC 3 cut(s) 50, 82, 147
MbiI CCGCTC 1 cut(s) 165
MboI GATC 3 cut(s) 48, 80, 145
MboII GAAGA 4 cut(s) 236, 339, 358, 630
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 190
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 3 cut(s) 179, 212, 274
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 2 cut(s) 381, 393
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 5 cut(s) 52, 130, 143, 151, 246
MspR9I CCNGG 2 cut(s) 53, 111
MvaI CCWGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 53
NdeII GATC 3 cut(s) 48, 80, 145
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 5 cut(s) 56, 74, 115, 116, 141
NmeAIII GCCGAG 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 1 cut(s) 481
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PpuMI RGGWCCY 2 cut(s) 73, 114
Psp5II RGGWCCY 2 cut(s) 73, 114
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 5 cut(s) 56, 74, 115, 116, 141
PspPI GGNCC 5 cut(s) 19, 55, 73, 86, 114
PspPPI RGGWCCY 2 cut(s) 73, 114
PstNI CAGNNNCTG 2 cut(s) 403, 476
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SaqAI TTAA 2 cut(s) 381, 393
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 3 cut(s) 48, 80, 145
Sau96I GGNCC 5 cut(s) 19, 55, 73, 86, 114
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 2 cut(s) 53, 111
SduI GDGCHC 1 cut(s) 190
SetI ASST 4 cut(s) 95, 405, 453, 518
SfaNI GCATC 1 cut(s) 620
SinI GGWCC 4 cut(s) 19, 55, 73, 114
Sse9I AATT 3 cut(s) 179, 212, 274
SsiI CCGC 7 cut(s) 22, 32, 62, 163, 357, 413, 479
SspMI CTAG 2 cut(s) 324, 444
StyD4I CCNGG 2 cut(s) 51, 109
StyI CCWWGG 1 cut(s) 240
TaqI TCGA 1 cut(s) 616
TasI AATT 3 cut(s) 179, 212, 274
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 381, 393
Tru9I TTAA 2 cut(s) 381, 393
TscAI CASTG 3 cut(s) 270, 442, 477
TspDTI ATGAA 2 cut(s) 26, 237
TspRI CASTG 3 cut(s) 270, 442, 477
VpaK11BI GGWCC 4 cut(s) 19, 55, 73, 114
XapI RAATTY 1 cut(s) 212
XspI CTAG 2 cut(s) 324, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.