Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013068

Physical Location & Seq

Genomic Coordinates Reverse (-)

16973202 .. 16974877

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGATTACCAAATCTCACTAATCCTAGCCACCAGCATAAGCTCCATCTTCCTCTTGCTTATCGTCTTCACCGTCGTTATGATCGTATGTCGCCGTCGTCCTCCAATCCAAAACCATCCTCGCCGGAATCGTAACTTCCCCGACCCCGATCCCGATCTAAACACGGAAACAGTAACCGAAAGCTTCGATCCATCAATCTGTGAAATATCCATGGCGGAACTCACTATAGCAACTAAAAACTTCTCATCGGATCTTATCGTCGGCGACGGAAGTTTCGGTCTCGTTTATCGAGCTCAGCTCTCAAACGGCGTCGTAGTCGCCGTTAAAAAGCTCGATCACGACGCTTTACAAGGATTCCGAGAATTCGCAGCCGAAATGGACACTCTAGGTCGTCTCAATCACCCAAACATAGTTAGGATCCTCGGTTATTGCATCTCGGGATCAGATCGGATTCTTATCTACGAGTTCTTAGAGAAAAGTAGTCTTGACTATTGGTTACACGAGACTGACGAAGAGAACAGTCCATTGACTTGGTCAACGCGCGTGAATATCACGCGCGATGTGGCCAAGGGTTTAGCTTATCTGCATGGTTTACCGAAACCAATTATACATAGAGATATCAAATCGAGTAATGTGCTGTTGGATTCGGATTTCGTGGCGCATATTGCGGATTTCGGATTGGCGCGAAGGATCGATGCGTCGAGGTCGCATGTGTCGACGCAAGTGGCGGGGACGATGGGGTACATGCCACCGGAGTATTGGGAAGGGAATACCGCGGCGACGGTTAAAGCTGATGTTTATAGTTTTGGTGTATTGATGTTGGAATTGGCGACGCGGAGACGGCCGAATTTAACGGTTGTTGTGGATGAGAAGGAAGTTGGGTTGGCTCAATGGGCTGTGATCATGGTGGAGCAAAATCGGTGTTATGAAATGTTGGATTTTGGAGGTGTTTGTGGTAGTGAGAAGGGAGTGGAAGAGTATTTTAGGATTGCTTGTCTTTGTATTAAAGAGTCGACTAGAGAAAGGCCTACTATGGTTCAAGTGGTGGAGTTATTGGAGGAGTTATGTCGATTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

359

Amino Acids

40.48

Weight (kDa)

5.22

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	86 - 349	1.5e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	87 - 351	1.3e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42440
fragaria_vesca	FvH4_2g13190
malus_domestica	MD05G1031600.v1.1 MD10G1033200.v1.1
prunus_persica	Prupe.8G038700_v2.0.a1
pyrus_communis	pycom05g02290 pycom10g02120 pycom10g02140
rosa_chinensis	RchiOBHm_Chr6g0274481
rosa_laevigata	RLG00000013540
rosa_multiflora	Rmu_sc0001289.1_g000019
rosa_roxburghii	Rroxscaffold_7G00194200
rosa_rugosa	Rorug06G0082100
rosa_samantha	Rh6AG198400 Rh6BG201700 Rh6CG202500 Rh6DG192900
rosa_wichuraiana	Rw6G017250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	716, 1013
AccII	CGCG	7 cut(s)	541, 543, 556, 558, 685, 776, 835
AciI	CCGC	6 cut(s)	215, 668, 728, 774, 776, 835
AclWI	GGATC	7 cut(s)	143, 182, 258, 412, 425, 448, 698
AcoI	YGGCCR	2 cut(s)	564, 842
AcsI	RAATTY	2 cut(s)	362, 847
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	1 cut(s)	743
AgsI	TTSAA	1 cut(s)	1040
AluBI	AGCT	7 cut(s)	42, 183, 293, 298, 331, 578, 791
AluI	AGCT	7 cut(s)	42, 183, 293, 298, 331, 578, 791
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	4 cut(s)	284, 398, 497, 832
AlwI	GGATC	7 cut(s)	143, 182, 258, 412, 425, 448, 698
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	3 cut(s)	564, 842, 1025
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	362, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspLEI	GCGC	4 cut(s)	543, 558, 661, 685
AsuHPI	GGTGA	2 cut(s)	61, 392
AvaI	CYCGRG	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	4 cut(s)	53, 123, 199, 730
BceAI	ACGGC	4 cut(s)	78, 305, 322, 857
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BclI	TGATCA	1 cut(s)	900
BcoDI	GTCTC	4 cut(s)	284, 398, 497, 832
BfaI	CTAG	3 cut(s)	26, 386, 1017
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	2 cut(s)	369, 777
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	2 cut(s)	370, 778
BmeT110I	CYCGRG	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	419
BmsI	GCATC	2 cut(s)	441, 685
BpiI	GAAGAC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
Bpu1102I	GCTNAGC	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	693
BsaBI	GATNNNNATC	2 cut(s)	153, 455
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	4 cut(s)	210, 421, 567, 774
BsaWI	WCCGGW	1 cut(s)	751
Bse8I	GATNNNNATC	2 cut(s)	153, 455
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	4 cut(s)	210, 421, 567, 774
BseGI	GGATG	2 cut(s)	115, 871
BseJI	GATNNNNATC	2 cut(s)	153, 455
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	1073
BseX3I	CGGCCG	1 cut(s)	842
BseXI	GCAGC	1 cut(s)	380
Bsh1236I	CGCG	7 cut(s)	541, 543, 556, 558, 685, 776, 835
Bsh1285I	CGRYCG	1 cut(s)	845
BshFI	GGCC	3 cut(s)	566, 844, 1027
BshVI	ATCGAT	1 cut(s)	693
BsiEI	CGRYCG	1 cut(s)	845
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	124, 752
BslFI	GGGAC	1 cut(s)	745
BsmAI	GTCTC	4 cut(s)	284, 398, 497, 832
BsmBI	CGTCTC	2 cut(s)	398, 832
BsmFI	GGGAC	1 cut(s)	745
BsnI	GGCC	3 cut(s)	566, 844, 1027
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	6 cut(s)	215, 668, 728, 774, 776, 835
BspANI	GGCC	3 cut(s)	566, 844, 1027
BspCNI	CTCAG	1 cut(s)	307
BspDI	ATCGAT	1 cut(s)	693
BspFNI	CGCG	7 cut(s)	541, 543, 556, 558, 685, 776, 835
BspLI	GGNNCC	1 cut(s)	419
BspPI	GGATC	7 cut(s)	143, 182, 258, 412, 425, 448, 698
BspTNI	GGTCTC	1 cut(s)	284
BssECI	CCNNGG	4 cut(s)	210, 421, 567, 774
BssNI	GRCGYC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	500
BssT1I	CCWWGG	2 cut(s)	210, 567
Bst2BI	CACGAG	1 cut(s)	500
Bst4CI	ACNGT	5 cut(s)	73, 172, 521, 784, 856
Bst6I	CTCTTC	2 cut(s)	507, 969
BstACI	GRCGYC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	294, 469
BstDSI	CCRYGG	2 cut(s)	210, 774
BstF5I	GGATG	2 cut(s)	115, 871
BstFNI	CGCG	7 cut(s)	541, 543, 556, 558, 685, 776, 835
BstHHI	GCGC	4 cut(s)	543, 558, 661, 685
BstMAI	GTCTC	4 cut(s)	284, 398, 497, 832
BstMCI	CGRYCG	1 cut(s)	845
BstMWI	GCNNNNNNNGC	3 cut(s)	665, 841, 893
BstNSI	RCATGY	2 cut(s)	713, 748
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	7 cut(s)	541, 543, 556, 558, 685, 776, 835
BstV1I	GCAGC	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	2 cut(s)	250, 417
BstXI	CCANNNNNNTGG	1 cut(s)	531
BstYI	RGATCY	2 cut(s)	250, 417
BstZI	CGGCCG	1 cut(s)	842
Bsu15I	ATCGAT	1 cut(s)	693
BsuRI	GGCC	3 cut(s)	566, 844, 1027
BsuTUI	ATCGAT	1 cut(s)	693
BtgI	CCRYGG	2 cut(s)	210, 774
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	115, 871
CfoI	GCGC	4 cut(s)	543, 558, 661, 685
Cfr42I	CCGCGG	1 cut(s)	777
ClaI	ATCGAT	1 cut(s)	693
CseI	GACGC	5 cut(s)	298, 350, 687, 727, 841
Csp6I	GTAC	1 cut(s)	742
CviAII	CATG	5 cut(s)	211, 587, 710, 745, 904
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	2 cut(s)	294, 469
EaeI	YGGCCR	2 cut(s)	564, 842
EagI	CGGCCG	1 cut(s)	842
Eam1104I	CTCTTC	2 cut(s)	507, 969
EarI	CTCTTC	2 cut(s)	507, 969
EciI	GGCGGA	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	293
EclXI	CGGCCG	1 cut(s)	842
Eco130I	CCWWGG	2 cut(s)	210, 567
Eco147I	AGGCCT	1 cut(s)	1027
Eco24I	GRGCYC	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	619
Eco52I	CGGCCG	1 cut(s)	842
Eco53kI	GAGCTC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	210, 567
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	2 cut(s)	210, 567
Esp3I	CGTCTC	2 cut(s)	398, 832
FaeI	CATG	5 cut(s)	214, 590, 713, 748, 907
FaqI	GGGAC	1 cut(s)	745
FatI	CATG	5 cut(s)	210, 586, 709, 744, 903
FauI	CCCGC	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	900
FblI	GTMKAC	2 cut(s)	716, 1013
Fnu4HI	GCNGC	2 cut(s)	369, 777
FokI	GGATG	2 cut(s)	102, 878
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	369, 777
FspBI	CTAG	3 cut(s)	26, 386, 1017
GlaI	GCGC	4 cut(s)	542, 557, 660, 684
GluI	GCNGC	2 cut(s)	369, 777
HaeIII	GGCC	3 cut(s)	566, 844, 1027
HapII	CCGG	2 cut(s)	124, 752
HgaI	GACGC	5 cut(s)	298, 350, 687, 727, 841
HhaI	GCGC	4 cut(s)	543, 558, 661, 685
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	5 cut(s)	214, 590, 713, 748, 907
Hin6I	GCGC	4 cut(s)	541, 556, 659, 683
HinP1I	GCGC	4 cut(s)	541, 556, 659, 683
HincII	GTYRAC	3 cut(s)	537, 717, 1014
HindII	GTYRAC	3 cut(s)	537, 717, 1014
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	5 cut(s)	127, 354, 451, 644, 1010
HpaII	CCGG	2 cut(s)	124, 752
HphI	GGTGA	2 cut(s)	61, 392
Hpy166II	GTNNAC	4 cut(s)	537, 593, 717, 1014
Hpy188I	TCNGA	6 cut(s)	250, 359, 445, 450, 649, 677
Hpy188III	TCNNGA	4 cut(s)	152, 338, 438, 485
Hpy8I	GTNNAC	4 cut(s)	537, 593, 717, 1014
HpyAV	CCTTC	4 cut(s)	681, 758, 865, 958
HpyCH4III	ACNGT	5 cut(s)	73, 172, 521, 784, 856
HpyCH4V	TGCA	2 cut(s)	432, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	665, 841, 893
HpyF3I	CTNAG	2 cut(s)	294, 469
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	214, 590, 713, 748, 907
HspAI	GCGC	4 cut(s)	541, 556, 659, 683
Ksp22I	TGATCA	1 cut(s)	900
KspI	CCGCGG	1 cut(s)	777
LmnI	GCTCC	2 cut(s)	47, 910
LpnPI	CCDG	3 cut(s)	46, 137, 765
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	2 cut(s)	441, 685
MaeI	CTAG	3 cut(s)	26, 386, 1017
MaeIII	GTNAC	3 cut(s)	131, 172, 495
MboII	GAAGA	4 cut(s)	40, 58, 524, 986
MflI	RGATCY	2 cut(s)	250, 417
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	4 cut(s)	362, 603, 824, 847
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	1019
MmeI	TCCRAC	3 cut(s)	621, 801, 915
MnlI	CCTC	7 cut(s)	62, 111, 129, 431, 696, 938, 1051
Mox20I	TGGCCA	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	4 cut(s)	324, 786, 851, 1005
Msp20I	TGGCCA	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	2 cut(s)	124, 752
MvnI	CGCG	7 cut(s)	541, 543, 556, 558, 685, 776, 835
MwoI	GCNNNNNNNGC	3 cut(s)	665, 841, 893
NcoI	CCATGG	1 cut(s)	210
NlaIII	CATG	5 cut(s)	214, 590, 713, 748, 907
NlaIV	GGNNCC	1 cut(s)	419
NspI	RCATGY	2 cut(s)	713, 748
PceI	AGGCCT	1 cut(s)	1027
PcsI	WCGNNNNNNNCGW	6 cut(s)	69, 81, 127, 318, 507, 713
PfeI	GAWTC	4 cut(s)	127, 354, 451, 644
PflFI	GACNNNGTC	1 cut(s)	532
PkrI	GCNGC	2 cut(s)	370, 778
PleI	GAGTC	1 cut(s)	1018
PpsI	GAGTC	1 cut(s)	1018
Psp124BI	GAGCTC	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	419
PsuI	RGATCY	2 cut(s)	250, 417
PsyI	GACNNNGTC	1 cut(s)	532
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
SacI	GAGCTC	1 cut(s)	295
SacII	CCGCGG	1 cut(s)	777
SalI	GTCGAC	2 cut(s)	715, 1012
SaqAI	TTAA	4 cut(s)	324, 786, 851, 1005
SatI	GCNGC	2 cut(s)	369, 777
SchI	GAGTC	1 cut(s)	1019
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	441, 685
SfcI	CTRYAG	1 cut(s)	225
Sfr303I	CCGCGG	1 cut(s)	777
SgrBI	CCGCGG	1 cut(s)	777
Sse9I	AATT	4 cut(s)	362, 603, 824, 847
SseBI	AGGCCT	1 cut(s)	1027
SsiI	CCGC	6 cut(s)	215, 668, 728, 774, 776, 835
SspMI	CTAG	3 cut(s)	26, 386, 1017
SstI	GAGCTC	1 cut(s)	295
StuI	AGGCCT	1 cut(s)	1027
StyI	CCWWGG	2 cut(s)	210, 567
TaaI	ACNGT	5 cut(s)	73, 172, 521, 784, 856
TaqI	TCGA	9 cut(s)	186, 289, 333, 626, 693, 701, 716, 1013, 1069
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	4 cut(s)	362, 603, 824, 847
TauI	GCSGC	1 cut(s)	779
TfiI	GAWTC	4 cut(s)	127, 354, 451, 644
Tru1I	TTAA	4 cut(s)	324, 786, 851, 1005
Tru9I	TTAA	4 cut(s)	324, 786, 851, 1005
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	942
TspGWI	ACGGA	2 cut(s)	179, 282
Tth111I	GACNNNGTC	1 cut(s)	532
XapI	RAATTY	2 cut(s)	362, 847
XceI	RCATGY	2 cut(s)	713, 748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	756
XmiI	GTMKAC	2 cut(s)	716, 1013
XspI	CTAG	3 cut(s)	26, 386, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.