Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013068

Physical Location & Seq

Genomic Coordinates Forward (+)

3849052 .. 3850873

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G038700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCCATGGAGAAAACCCTCCAAGCCGTTCTTGCGGCTACAGGCAGCTTCTTCGCCATAACCGTAGTCTTCGCCTGCATCTACCTCTTCTGGAAGGGCTCCAAACGCAAATCGACCCGCTCCCGCTACACCCGACCCGTCCGCAACCCGCCCGCCACCGCCCTCACCTCCGTTACCGTCGACGAAAGCTTTTCCGTCGATCCCTCGCTCAAGGTCTCCATGGAAGAGGTCGTCAAGGCCACCAAGAATTTCTCCGCCGATCTCGTCGTAGGCGACGGCGGCTTCGGCTTCGTCTACAAGGCCCAGTTCTCCGACGGCCGCACCGTCGCCGTCAAGAAGCTCGATCCCGACGCCTTCCAAGGGTTTCGAGAATTTCAGGCGGAGATGGAAACCCTAAGTAAGCTCCGGCACCCAAATATCGTTAAGATTTTGGGATATTGTGTCTCCGGCGCCGATAGGATATTGATTTATGAGTTTATTGAGCGGGGCAATCTGGACCGTTGGCTTAACGACTCGTCGTCATGCGACGGTGATGGGTATGATGACGGGGCCGGGTTTAGAGTACCGTTATCTTGGAAAACGAGGATTAAGATCGTTAAGGGTGTGGCTAATGGGCTGGCTTTTTTGCATGGGTTGGACAAGCCCATTATTCATAGGGATATCAAGGCTAGTAATGTGTTGTTGGACTCGGAGTTTGAGGCCCATATTGCCGATTTCGGGCTGGCTCGGAGGATGGACGCCTCCCGTTCGCATGTCTCGACGCAGTTTGCCGGTACCATGGGGTACATGCCGCCGGAGTACAAGGAAGGGTTCACGGGGGCAACCGTGAGAGCCGATGTGTTTAGCTTTGGGGTTTTGATGTTGGAGGTTGCGACCGGAAAACGGCCCAATTTGCCCACGAAGTTCGACGGCAAAGAAATGGGCTTGGTGGAATGGGCCAGGAAAATGGAGGCCCAAAACTGCCAAATGGAAATGGTCGACCCTGGTATTTCGAAGGACGACTTGGATGAAGCCAATGTGAAGGAGTATTTTAGGATTGCTTGTCATTGTGCTGGTGAGATTTCAAGAGAAAGGCCCCCAATGAGAGAGGTGATTGAAATGTTAAATCAAATTTCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

374

Amino Acids

41.51

Weight (kDa)

6.62

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42440
fragaria_vesca	FvH4_2g13190
malus_domestica	MD05G1031600.v1.1 MD10G1033200.v1.1
prunus_persica	Prupe.8G038700_v2.0.a1
pyrus_communis	pycom05g02290 pycom10g02120 pycom10g02140
rosa_chinensis	RchiOBHm_Chr6g0274481
rosa_laevigata	RLG00000013540
rosa_multiflora	Rmu_sc0001289.1_g000019
rosa_roxburghii	Rroxscaffold_7G00194200
rosa_rugosa	Rorug06G0082100
rosa_samantha	Rh6AG198400 Rh6BG201700 Rh6CG202500 Rh6DG192900
rosa_wichuraiana	Rw6G017250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	773
AccB1I	GGYRCC	3 cut(s)	408, 449, 773
AccBSI	CCGCTC	2 cut(s)	120, 484
AccI	GTMKAC	3 cut(s)	180, 294, 978
AclWI	GGATC	2 cut(s)	194, 338
AcoI	YGGCCR	2 cut(s)	3, 316
AcsI	RAATTY	3 cut(s)	247, 371, 1110
AcyI	GRCGYC	3 cut(s)	351, 450, 738
AfaI	GTAC	4 cut(s)	564, 775, 785, 800
AfiI	CCNNNNNNNGG	3 cut(s)	360, 717, 882
AgsI	TTSAA	2 cut(s)	1065, 1097
AhdI	GACNNNNNGTC	1 cut(s)	517
AjnI	CCWGG	2 cut(s)	938, 982
AjuI	GAANNNNNNNTTGG	2 cut(s)	986, 1018
AluBI	AGCT	5 cut(s)	48, 189, 340, 403, 846
AluI	AGCT	5 cut(s)	48, 189, 340, 403, 846
Alw26I	GTCTC	3 cut(s)	220, 448, 760
AlwI	GGATC	2 cut(s)	194, 338
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	3 cut(s)	247, 371, 1110
ArsI	GACNNNNNNTTYG	4 cut(s)	266, 298, 677, 709
Asp718I	GGTACC	1 cut(s)	773
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	8 cut(s)	301, 496, 549, 700, 885, 936, 952, 1074
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	4 cut(s)	157, 542, 1067, 1102
AsuII	TTCGAA	1 cut(s)	992
AvaII	GGWCC	1 cut(s)	496
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	3 cut(s)	408, 449, 773
BanII	GRGCYC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	3 cut(s)	379, 527, 727
BceAI	ACGGC	6 cut(s)	11, 292, 314, 331, 899, 925
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	2 cut(s)	940, 984
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	220, 448, 760
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	453
BisI	GCNGC	5 cut(s)	36, 46, 280, 319, 791
BlsI	GCNGC	5 cut(s)	37, 47, 281, 320, 792
Bme1390I	CCNGG	3 cut(s)	553, 940, 984
Bme18I	GGWCC	1 cut(s)	496
BmeRI	GACNNNNNGTC	1 cut(s)	517
BmgT120I	GGNCC	8 cut(s)	301, 496, 549, 700, 885, 936, 952, 1074
BmiI	GGNNCC	6 cut(s)	100, 410, 451, 550, 775, 1076
BmrFI	CCNGG	3 cut(s)	553, 940, 984
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	61
Bpu14I	TTCGAA	1 cut(s)	992
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	553
BsaBI	GATNNNNATC	1 cut(s)	590
BsaHI	GRCGYC	3 cut(s)	351, 450, 738
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	5 cut(s)	6, 219, 358, 777, 982
BsaWI	WCCGGW	1 cut(s)	875
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 717, 882
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	590
BseBI	CCWGG	2 cut(s)	940, 984
BseDI	CCNNGG	5 cut(s)	6, 219, 358, 777, 982
BseGI	GGATG	2 cut(s)	738, 1012
BseJI	GATNNNNATC	1 cut(s)	590
BseLI	CCNNNNNNNGG	3 cut(s)	360, 717, 882
BseNI	ACTGG	1 cut(s)	304
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	57
Bsh1285I	CGRYCG	2 cut(s)	319, 876
BshNI	GGYRCC	3 cut(s)	408, 449, 773
BsiEI	CGRYCG	2 cut(s)	319, 876
BsiSI	CCGG	6 cut(s)	406, 447, 552, 771, 794, 876
BslI	CCNNNNNNNGG	3 cut(s)	360, 717, 882
BsmAI	GTCTC	3 cut(s)	220, 448, 760
Bso31I	GGTCTC	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	992
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	5 cut(s)	199, 259, 343, 591, 1116
Bsp19I	CCATGG	3 cut(s)	6, 219, 777
BspLI	GGNNCC	6 cut(s)	100, 410, 451, 550, 775, 1076
BspPI	GGATC	2 cut(s)	194, 338
BspT104I	TTCGAA	1 cut(s)	992
BspT107I	GGYRCC	3 cut(s)	408, 449, 773
BspTNI	GGTCTC	1 cut(s)	220
BsrBI	CCGCTC	2 cut(s)	120, 484
BsrFI	RCCGGY	1 cut(s)	770
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	5 cut(s)	6, 219, 358, 777, 982
BssMI	GATC	5 cut(s)	199, 259, 343, 591, 1116
BssNI	GRCGYC	3 cut(s)	351, 450, 738
BssT1I	CCWWGG	4 cut(s)	6, 219, 358, 777
Bst2UI	CCWGG	2 cut(s)	940, 984
Bst4CI	ACNGT	7 cut(s)	64, 178, 325, 500, 530, 567, 826
Bst6I	CTCTTC	2 cut(s)	92, 219
BstACI	GRCGYC	3 cut(s)	351, 450, 738
BstBI	TTCGAA	1 cut(s)	992
BstC8I	GCNNGC	4 cut(s)	76, 153, 618, 723
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	3 cut(s)	6, 219, 777
BstF5I	GGATG	2 cut(s)	738, 1012
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	5 cut(s)	202, 262, 346, 594, 1119
BstMAI	GTCTC	3 cut(s)	220, 448, 760
BstMBI	GATC	5 cut(s)	199, 259, 343, 591, 1116
BstMCI	CGRYCG	2 cut(s)	319, 876
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 105, 279, 285, 707, 892
BstNI	CCWGG	2 cut(s)	940, 984
BstNSI	RCATGY	2 cut(s)	755, 790
BstSCI	CCNGG	3 cut(s)	551, 938, 982
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	946
BstZI	CGGCCG	1 cut(s)	316
BtgI	CCRYGG	3 cut(s)	6, 219, 777
BtsCI	GGATG	2 cut(s)	738, 1012
Cac8I	GCNNGC	4 cut(s)	76, 153, 618, 723
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	8 cut(s)	301, 496, 549, 700, 885, 936, 952, 1074
CseI	GACGC	3 cut(s)	359, 746, 769
Csp6I	GTAC	4 cut(s)	563, 774, 784, 799
CviAII	CATG	7 cut(s)	7, 220, 522, 629, 752, 778, 787
CviQI	GTAC	4 cut(s)	563, 774, 784, 799
DdeI	CTNAG	1 cut(s)	395
DinI	GGCGCC	1 cut(s)	451
DpnI	GATC	5 cut(s)	201, 261, 345, 593, 1118
DpnII	GATC	5 cut(s)	199, 259, 343, 591, 1116
DriI	GACNNNNNGTC	1 cut(s)	517
EaeI	YGGCCR	2 cut(s)	3, 316
EagI	CGGCCG	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	92, 219
Eam1105I	GACNNNNNGTC	1 cut(s)	517
EarI	CTCTTC	2 cut(s)	92, 219
EciI	GGCGGA	2 cut(s)	244, 395
EclXI	CGGCCG	1 cut(s)	316
Eco130I	CCWWGG	4 cut(s)	6, 219, 358, 777
Eco24I	GRGCYC	1 cut(s)	101
Eco31I	GGTCTC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	1074
EcoRII	CCWGG	2 cut(s)	938, 982
EcoRV	GATATC	1 cut(s)	661
EcoT14I	CCWWGG	4 cut(s)	6, 219, 358, 777
EcoT38I	GRGCYC	1 cut(s)	101
EgeI	GGCGCC	1 cut(s)	451
EheI	GGCGCC	1 cut(s)	451
ErhI	CCWWGG	4 cut(s)	6, 219, 358, 777
FaeI	CATG	7 cut(s)	10, 223, 525, 632, 755, 781, 790
FalI	AAGNNNNNCTT	4 cut(s)	15, 47, 986, 1018
FatI	CATG	7 cut(s)	6, 219, 521, 628, 751, 777, 786
FauI	CCCGC	5 cut(s)	125, 131, 156, 160, 477
FblI	GTMKAC	3 cut(s)	180, 294, 978
Fnu4HI	GCNGC	5 cut(s)	36, 46, 280, 319, 791
FokI	GGATG	2 cut(s)	745, 1019
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	5 cut(s)	36, 46, 280, 319, 791
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	5 cut(s)	36, 46, 280, 319, 791
HaeII	RGCGCY	1 cut(s)	453
HapII	CCGG	6 cut(s)	406, 447, 552, 771, 794, 876
HgaI	GACGC	3 cut(s)	359, 746, 769
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	3 cut(s)	351, 450, 738
Hin1II	CATG	7 cut(s)	10, 223, 525, 632, 755, 781, 790
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HincII	GTYRAC	2 cut(s)	181, 979
HindII	GTYRAC	2 cut(s)	181, 979
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	2 cut(s)	512, 686
HpaII	CCGG	6 cut(s)	406, 447, 552, 771, 794, 876
HphI	GGTGA	4 cut(s)	157, 542, 1067, 1102
Hpy166II	GTNNAC	4 cut(s)	181, 295, 813, 979
Hpy188I	TCNGA	4 cut(s)	313, 691, 729, 1121
Hpy188III	TCNNGA	7 cut(s)	91, 334, 347, 368, 494, 757, 1065
Hpy8I	GTNNAC	4 cut(s)	181, 295, 813, 979
HpyAV	CCTTC	5 cut(s)	88, 364, 800, 988, 1015
HpyCH4III	ACNGT	7 cut(s)	64, 178, 325, 500, 530, 567, 826
HpyCH4V	TGCA	2 cut(s)	78, 628
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 105, 279, 285, 707, 892
HpyF3I	CTNAG	1 cut(s)	395
Hsp92I	GRCGYC	3 cut(s)	351, 450, 738
Hsp92II	CATG	7 cut(s)	10, 223, 525, 632, 755, 781, 790
HspAI	GCGC	1 cut(s)	450
KasI	GGCGCC	1 cut(s)	449
KpnI	GGTACC	1 cut(s)	777
Kzo9I	GATC	5 cut(s)	199, 259, 343, 591, 1116
LmnI	GCTCC	3 cut(s)	104, 125, 408
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	5 cut(s)	201, 261, 345, 593, 1118
MbiI	CCGCTC	2 cut(s)	120, 484
MboI	GATC	5 cut(s)	199, 259, 343, 591, 1116
MboII	GAAGA	4 cut(s)	43, 61, 79, 236
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	247, 371, 889, 1110
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	506, 680
MmeI	TCCRAC	4 cut(s)	336, 615, 663, 843
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	423, 507, 588, 597, 1103
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	406, 447, 552, 771, 794, 876
MspR9I	CCNGG	3 cut(s)	553, 940, 984
MvaI	CCWGG	2 cut(s)	940, 984
MwoI	GCNNNNNNNGC	6 cut(s)	32, 105, 279, 285, 707, 892
NarI	GGCGCC	1 cut(s)	450
NciI	CCSGG	1 cut(s)	553
NcoI	CCATGG	3 cut(s)	6, 219, 777
NdeII	GATC	5 cut(s)	199, 259, 343, 591, 1116
NlaIII	CATG	7 cut(s)	10, 223, 525, 632, 755, 781, 790
NlaIV	GGNNCC	6 cut(s)	100, 410, 451, 550, 775, 1076
NspI	RCATGY	2 cut(s)	755, 790
NspV	TTCGAA	1 cut(s)	992
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 270, 321, 755
PkrI	GCNGC	5 cut(s)	37, 47, 281, 320, 792
PleI	GAGTC	2 cut(s)	506, 680
PluTI	GGCGCC	1 cut(s)	453
PpsI	GAGTC	2 cut(s)	506, 680
Psp6I	CCWGG	2 cut(s)	938, 982
PspGI	CCWGG	2 cut(s)	938, 982
PspN4I	GGNNCC	6 cut(s)	100, 410, 451, 550, 775, 1076
PspPI	GGNCC	8 cut(s)	301, 496, 549, 700, 885, 936, 952, 1074
RsaI	GTAC	4 cut(s)	564, 775, 785, 800
RsaNI	GTAC	4 cut(s)	563, 774, 784, 799
SalI	GTCGAC	2 cut(s)	179, 977
SaqAI	TTAA	5 cut(s)	423, 507, 588, 597, 1103
SatI	GCNGC	5 cut(s)	36, 46, 280, 319, 791
Sau3AI	GATC	5 cut(s)	199, 259, 343, 591, 1116
Sau96I	GGNCC	8 cut(s)	301, 496, 549, 700, 885, 936, 952, 1074
SchI	GAGTC	2 cut(s)	506, 680
ScrFI	CCNGG	3 cut(s)	553, 940, 984
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	451
SfuI	TTCGAA	1 cut(s)	992
SgrDI	CGTCGACG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	496
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	247, 371, 889, 1110
SspDI	GGCGCC	1 cut(s)	449
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	3 cut(s)	551, 938, 982
StyI	CCWWGG	4 cut(s)	6, 219, 358, 777
TaaI	ACNGT	7 cut(s)	64, 178, 325, 500, 530, 567, 826
TasI	AATT	4 cut(s)	247, 371, 889, 1110
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	4 cut(s)	38, 282, 321, 793
Tru1I	TTAA	5 cut(s)	423, 507, 588, 597, 1103
Tru9I	TTAA	5 cut(s)	423, 507, 588, 597, 1103
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	641, 1023
TspGWI	ACGGA	2 cut(s)	160, 184
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	3 cut(s)	247, 371, 1110
XceI	RCATGY	2 cut(s)	755, 790
XmiI	GTMKAC	3 cut(s)	180, 294, 978
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.