RLG00000013540
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
32890461 .. 32891582
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013540

Sequence Viewer

Length: 1122 bp
ATGGCCATGGACAAGACTCTCCAAGCCGTTCTCGCCGCCACCGGAAGCTTCTTCGCCATAACCGTAATCTTCGCCTCCGTCTACTTACTCTGCAAGGGCGCCAAGTCCAAGTCCACCGGCTCCCGCCGCACGAACCGGGCAATCCGCAACCGGACGACCCAGCTCACCTACATCACCGTCGACGAGAGCGCCTCCTTCGATCCCTGTCTCAAGTTCTCCATGGATGAAGTCGTCAAGGCCACCAAGAACTTCAACAAAGACCTCGTAGTCGGCGACGGCGGCTTCGGCCTCGTCTACAAGGCCCAGCTCTCCAACGGCCTCAAGGTCGCCATCAAGAAGCTCGATCCCGACGCCTTTCAAGGCTTCCGCGAGTTTCGGGCCGAGATGGAAACCCTAGGTCAGCTCCGGCACCCCAATCTTGTTACGATTCTCGGATATTGCGTGTCCGGCGCCGATAGGATTCTGATTTACGAGTTTATGGAGAGGGGAAATCTGGACCGTTGGCTTCACGACTCCTCGTCAACGGACTTTGATGGCTATGATGAGACGTCTGGGTGGAAATTACCGTTATCTTGGAAAACGAGGAATAAGATCGTTAGGGGCGTGGCCAATGGGCTGGCCTATTTGCACAGCTTGGAGAAGCCCATAATCCATAGGGATATCAAGGCTAGCAATGTGTTGTTGGACAGGGAGTACGAAGCCCATATTGCAGATTTCGGGCTCGCGAGGAGCATCGACATGTCGCGCTCCCACGTGTCGACGCAATTCGCGGGTACCATGGGTTACATGCCGCCCGAGTACAAAGAAGGTAACACGGTGGCGACCGTGAAGGCGGATGTGTATAGTTTTGGGATTTTGATGTTGGAGGTTGCGACCGGAAGACGGCCTAATTTGCCGAGCGTGTTTGACGGAAAAGAGATGGGATTGGTGGAATGGGCGAGGAAAATGGTGGCCCAAAACCGGCAAATGGAAATGGTGGATCCGAGTATTTCAAGGGAGGATTTGGATGAAGGAAATATCGTGAAGTATTTTGAAATTGCTGGTGAATGTGCTCATGAGTCTTCAAGGCAGAGGCCCCCAATGAAAGATGTCATTGGGCTGTTAAATGAGCTTCCGACGTGA

Protein Analysis

374

Amino Acids

41.7

Weight (kDa)

7.06

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 87 - 297 3.1e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 89 - 365 3.8e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013068)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AatII GACGTC 1 cut(s) 551
Acc65I GGTACC 1 cut(s) 773
AccB1I GGYRCC 4 cut(s) 98, 408, 449, 773
AccI GTMKAC 4 cut(s) 81, 180, 294, 758
AccII CGCG 4 cut(s) 369, 725, 745, 770
AciI CCGC 9 cut(s) 36, 124, 127, 145, 279, 367, 770, 791, 833
AclWI GGATC 4 cut(s) 194, 338, 974, 987
AcoI YGGCCR 2 cut(s) 3, 606
AcvI CACGTG 1 cut(s) 754
AcyI GRCGYC 4 cut(s) 99, 351, 450, 548
AfaI GTAC 3 cut(s) 695, 775, 800
AfiI CCNNNNNNNGG 3 cut(s) 882, 960, 967
AflIII ACRYGT 2 cut(s) 738, 753
AgsI TTSAA 5 cut(s) 253, 359, 993, 1034, 1065
AhdI GACNNNNNGTC 1 cut(s) 517
AjiI CACGTC 1 cut(s) 1119
AluBI AGCT 7 cut(s) 48, 163, 307, 340, 403, 633, 1111
AluI AGCT 7 cut(s) 48, 163, 307, 340, 403, 633, 1111
Alw21I GWGCWC 1 cut(s) 1054
Alw26I GTCTC 2 cut(s) 212, 539
AlwI GGATC 4 cut(s) 194, 338, 974, 987
Ama87I CYCGRG 1 cut(s) 794
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
Asp718I GGTACC 1 cut(s) 773
AspA2I CCTAGG 1 cut(s) 394
AspLEI GCGC 4 cut(s) 101, 191, 452, 747
AspS9I GGNCC 5 cut(s) 301, 378, 496, 952, 1074
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 157, 166, 1055
AsuNHI GCTAGC 1 cut(s) 668
AvaI CYCGRG 1 cut(s) 794
AvaII GGWCC 1 cut(s) 496
AvrII CCTAGG 1 cut(s) 394
BalI TGGCCA 2 cut(s) 5, 608
BamHI GGATCC 1 cut(s) 979
BanI GGYRCC 4 cut(s) 98, 408, 449, 773
BanII GRGCYC 1 cut(s) 723
BbrPI CACGTG 1 cut(s) 754
BbsI GAAGAC 2 cut(s) 886, 1053
Bbv12I GWGCWC 1 cut(s) 1054
BccI CCATC 4 cut(s) 338, 379, 527, 913
BceAI ACGGC 4 cut(s) 11, 292, 331, 899
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 212, 539
BfaI CTAG 2 cut(s) 395, 669
BfoI RGCGCY 3 cut(s) 102, 192, 453
BisI GCNGC 4 cut(s) 36, 127, 280, 791
BlnI CCTAGG 1 cut(s) 394
BlsI GCNGC 4 cut(s) 37, 128, 281, 792
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 496
BmeRI GACNNNNNGTC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 794
BmgBI CACGTC 1 cut(s) 1119
BmgT120I GGNCC 5 cut(s) 301, 378, 496, 952, 1074
BmiI GGNNCC 7 cut(s) 100, 121, 410, 451, 775, 981, 1076
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 741
BmtI GCTAGC 1 cut(s) 672
BpiI GAAGAC 2 cut(s) 886, 1053
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpuEI CTTGAG 2 cut(s) 194, 305
BpuMI CCSGG 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 754
BsaHI GRCGYC 4 cut(s) 99, 351, 450, 548
BsaJI CCNNGG 4 cut(s) 6, 219, 394, 777
BsaWI WCCGGW 3 cut(s) 41, 150, 875
Bsc4I CCNNNNNNNGG 3 cut(s) 882, 960, 967
Bse118I RCCGGY 2 cut(s) 116, 960
Bse3DI GCAATG 1 cut(s) 679
BseDI CCNNGG 4 cut(s) 6, 219, 394, 777
BseGI GGATG 3 cut(s) 229, 841, 1012
BseLI CCNNNNNNNGG 3 cut(s) 882, 960, 967
BseMI GCAATG 1 cut(s) 679
BseRI GAGGAG 2 cut(s) 505, 742
BseYI CCCAGC 2 cut(s) 159, 303
Bsh1236I CGCG 4 cut(s) 369, 725, 745, 770
Bsh1285I CGRYCG 2 cut(s) 825, 876
BshNI GGYRCC 4 cut(s) 98, 408, 449, 773
BsiEI CGRYCG 2 cut(s) 825, 876
BsiHKAI GWGCWC 1 cut(s) 1054
BsiHKCI CYCGRG 1 cut(s) 794
BsiSI CCGG 8 cut(s) 42, 117, 136, 151, 406, 447, 876, 961
BslI CCNNNNNNNGG 3 cut(s) 882, 960, 967
BsmAI GTCTC 2 cut(s) 212, 539
BsmBI CGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 794
Bsp1286I GDGCHC 2 cut(s) 723, 1054
Bsp143I GATC 4 cut(s) 199, 343, 591, 979
Bsp19I CCATGG 3 cut(s) 6, 219, 777
Bsp68I TCGCGA 1 cut(s) 725
BspACI CCGC 9 cut(s) 36, 124, 127, 145, 279, 367, 770, 791, 833
BspFNI CGCG 4 cut(s) 369, 725, 745, 770
BspHI TCATGA 1 cut(s) 1054
BspLI GGNNCC 7 cut(s) 100, 121, 410, 451, 775, 981, 1076
BspOI GCTAGC 1 cut(s) 672
BspPI GGATC 4 cut(s) 194, 338, 974, 987
BspT107I GGYRCC 4 cut(s) 98, 408, 449, 773
BsrDI GCAATG 1 cut(s) 679
BsrFI RCCGGY 2 cut(s) 116, 960
BssAI RCCGGY 2 cut(s) 116, 960
BssECI CCNNGG 4 cut(s) 6, 219, 394, 777
BssMI GATC 4 cut(s) 199, 343, 591, 979
BssNI GRCGYC 4 cut(s) 99, 351, 450, 548
BssT1I CCWWGG 4 cut(s) 6, 219, 394, 777
Bst4CI ACNGT 6 cut(s) 64, 178, 500, 567, 817, 826
BstACI GRCGYC 4 cut(s) 99, 351, 450, 548
BstBAI YACGTR 1 cut(s) 754
BstC8I GCNNGC 3 cut(s) 618, 670, 723
BstDSI CCRYGG 3 cut(s) 6, 219, 777
BstF5I GGATG 3 cut(s) 229, 841, 1012
BstFNI CGCG 4 cut(s) 369, 725, 745, 770
BstH2I RGCGCY 3 cut(s) 102, 192, 453
BstHHI GCGC 4 cut(s) 101, 191, 452, 747
BstKTI GATC 4 cut(s) 202, 346, 594, 982
BstMAI GTCTC 2 cut(s) 212, 539
BstMBI GATC 4 cut(s) 199, 343, 591, 979
BstMCI CGRYCG 2 cut(s) 825, 876
BstMWI GCNNNNNNNGC 7 cut(s) 32, 126, 279, 285, 447, 707, 892
BstNSI RCATGY 2 cut(s) 742, 790
BstSCI CCNGG 1 cut(s) 135
BstUI CGCG 4 cut(s) 369, 725, 745, 770
BstV2I GAAGAC 2 cut(s) 886, 1053
BstX2I RGATCY 1 cut(s) 979
BstXI CCANNNNNNTGG 1 cut(s) 616
BstYI RGATCY 1 cut(s) 979
BtgI CCRYGG 3 cut(s) 6, 219, 777
BtrI CACGTC 1 cut(s) 1119
BtsCI GGATG 3 cut(s) 229, 841, 1012
BtuMI TCGCGA 1 cut(s) 725
Cac8I GCNNGC 3 cut(s) 618, 670, 723
CciI TCATGA 1 cut(s) 1054
CfoI GCGC 4 cut(s) 101, 191, 452, 747
Cfr10I RCCGGY 2 cut(s) 116, 960
Cfr13I GGNCC 5 cut(s) 301, 378, 496, 952, 1074
CseI GACGC 2 cut(s) 359, 769
Csp6I GTAC 3 cut(s) 694, 774, 799
CviAII CATG 6 cut(s) 7, 220, 739, 778, 787, 1055
CviQI GTAC 3 cut(s) 694, 774, 799
DinI GGCGCC 2 cut(s) 100, 451
DpnI GATC 4 cut(s) 201, 345, 593, 981
DpnII GATC 4 cut(s) 199, 343, 591, 979
DrdI GACNNNNNNGTC 1 cut(s) 266
DriI GACNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 3, 606
Eam1105I GACNNNNNGTC 1 cut(s) 517
EciI GGCGGA 1 cut(s) 848
Eco130I CCWWGG 4 cut(s) 6, 219, 394, 777
Eco24I GRGCYC 1 cut(s) 723
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 496
Eco72I CACGTG 1 cut(s) 754
Eco88I CYCGRG 1 cut(s) 794
EcoO109I RGGNCCY 1 cut(s) 1074
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 4 cut(s) 6, 219, 394, 777
EcoT38I GRGCYC 1 cut(s) 723
EgeI GGCGCC 2 cut(s) 100, 451
EheI GGCGCC 2 cut(s) 100, 451
ErhI CCWWGG 4 cut(s) 6, 219, 394, 777
Esp3I CGTCTC 1 cut(s) 539
FaeI CATG 6 cut(s) 10, 223, 742, 781, 790, 1058
FatI CATG 6 cut(s) 6, 219, 738, 777, 786, 1054
FauI CCCGC 2 cut(s) 131, 763
FblI GTMKAC 4 cut(s) 81, 180, 294, 758
Fnu4HI GCNGC 4 cut(s) 36, 127, 280, 791
FokI GGATG 3 cut(s) 236, 848, 1019
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 4 cut(s) 36, 127, 280, 791
FspBI CTAG 2 cut(s) 395, 669
GlaI GCGC 4 cut(s) 100, 190, 451, 746
GluI GCNGC 4 cut(s) 36, 127, 280, 791
GsaI CCCAGC 2 cut(s) 163, 307
HaeII RGCGCY 3 cut(s) 102, 192, 453
HapII CCGG 8 cut(s) 42, 117, 136, 151, 406, 447, 876, 961
HgaI GACGC 2 cut(s) 359, 769
HhaI GCGC 4 cut(s) 101, 191, 452, 747
Hin1I GRCGYC 4 cut(s) 99, 351, 450, 548
Hin1II CATG 6 cut(s) 10, 223, 742, 781, 790, 1058
Hin6I GCGC 4 cut(s) 99, 189, 450, 745
HinP1I GCGC 4 cut(s) 99, 189, 450, 745
HincII GTYRAC 3 cut(s) 181, 522, 759
HindII GTYRAC 3 cut(s) 181, 522, 759
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 5 cut(s) 16, 427, 460, 512, 1058
HpaII CCGG 8 cut(s) 42, 117, 136, 151, 406, 447, 876, 961
HphI GGTGA 3 cut(s) 157, 166, 1055
Hpy166II GTNNAC 6 cut(s) 82, 114, 181, 295, 522, 759
Hpy188I TCNGA 4 cut(s) 434, 465, 984, 1116
Hpy188III TCNNGA 7 cut(s) 334, 347, 494, 509, 724, 1021, 1055
Hpy8I GTNNAC 6 cut(s) 82, 114, 181, 295, 522, 759
Hpy99I CGWCG 6 cut(s) 182, 185, 278, 353, 763, 1120
HpyAV CCTTC 4 cut(s) 205, 800, 823, 1004
HpyCH4III ACNGT 6 cut(s) 64, 178, 500, 567, 817, 826
HpyCH4IV ACGT 3 cut(s) 548, 753, 1118
HpyCH4V TGCA 3 cut(s) 93, 628, 710
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 126, 279, 285, 447, 707, 892
HpySE526I ACGT 3 cut(s) 548, 753, 1118
Hsp92I GRCGYC 4 cut(s) 99, 351, 450, 548
Hsp92II CATG 6 cut(s) 10, 223, 742, 781, 790, 1058
HspAI GCGC 4 cut(s) 99, 189, 450, 745
KasI GGCGCC 2 cut(s) 98, 449
KpnI GGTACC 1 cut(s) 777
Kzo9I GATC 4 cut(s) 199, 343, 591, 979
LmnI GCTCC 4 cut(s) 125, 408, 729, 752
LweI GCATC 1 cut(s) 741
MaeI CTAG 2 cut(s) 395, 669
MaeII ACGT 3 cut(s) 548, 753, 1118
MaeIII GTNAC 3 cut(s) 421, 782, 809
MalI GATC 4 cut(s) 201, 345, 593, 981
MboI GATC 4 cut(s) 199, 343, 591, 979
MboII GAAGA 4 cut(s) 43, 61, 891, 1053
MflI RGATCY 1 cut(s) 979
MhlI GDGCHC 2 cut(s) 723, 1054
MlsI TGGCCA 2 cut(s) 5, 608
MluCI AATT 4 cut(s) 560, 764, 889, 1035
MluNI TGGCCA 2 cut(s) 5, 608
Mly113I GGCGCC 2 cut(s) 99, 450
MlyI GAGTC 3 cut(s) 10, 506, 1067
MmeI TCCRAC 3 cut(s) 336, 663, 843
Mox20I TGGCCA 2 cut(s) 5, 608
MscI TGGCCA 2 cut(s) 5, 608
MseI TTAA 1 cut(s) 1103
MslI CAYNNNNRTG 1 cut(s) 737
Msp20I TGGCCA 2 cut(s) 5, 608
MspI CCGG 8 cut(s) 42, 117, 136, 151, 406, 447, 876, 961
MspR9I CCNGG 1 cut(s) 137
MvnI CGCG 4 cut(s) 369, 725, 745, 770
MwoI GCNNNNNNNGC 7 cut(s) 32, 126, 279, 285, 447, 707, 892
NarI GGCGCC 2 cut(s) 99, 450
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 3 cut(s) 6, 219, 777
NdeII GATC 4 cut(s) 199, 343, 591, 979
NheI GCTAGC 1 cut(s) 668
NlaIII CATG 6 cut(s) 10, 223, 742, 781, 790, 1058
NlaIV GGNNCC 7 cut(s) 100, 121, 410, 451, 775, 981, 1076
NmeAIII GCCGAG 2 cut(s) 406, 921
NruI TCGCGA 1 cut(s) 725
NspI RCATGY 2 cut(s) 742, 790
PagI TCATGA 1 cut(s) 1054
PciI ACATGT 1 cut(s) 738
PcsI WCGNNNNNNNCGW 4 cut(s) 60, 270, 438, 600
PfeI GAWTC 2 cut(s) 427, 460
PkrI GCNGC 4 cut(s) 37, 128, 281, 792
PleI GAGTC 3 cut(s) 10, 506, 1066
PluTI GGCGCC 2 cut(s) 102, 453
PmaCI CACGTG 1 cut(s) 754
PmlI CACGTG 1 cut(s) 754
PpsI GAGTC 3 cut(s) 10, 506, 1066
Ppu21I YACGTR 1 cut(s) 754
PscI ACATGT 1 cut(s) 738
PspCI CACGTG 1 cut(s) 754
PspFI CCCAGC 2 cut(s) 159, 303
PspN4I GGNNCC 7 cut(s) 100, 121, 410, 451, 775, 981, 1076
PspPI GGNCC 5 cut(s) 301, 378, 496, 952, 1074
PsuI RGATCY 1 cut(s) 979
RruI TCGCGA 1 cut(s) 725
RsaI GTAC 3 cut(s) 695, 775, 800
RsaNI GTAC 3 cut(s) 694, 774, 799
RseI CAYNNNNRTG 1 cut(s) 737
SalI GTCGAC 2 cut(s) 179, 757
SaqAI TTAA 1 cut(s) 1103
SatI GCNGC 4 cut(s) 36, 127, 280, 791
Sau3AI GATC 4 cut(s) 199, 343, 591, 979
Sau96I GGNCC 5 cut(s) 301, 378, 496, 952, 1074
SchI GAGTC 3 cut(s) 10, 506, 1067
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 2 cut(s) 723, 1054
SfaNI GCATC 1 cut(s) 741
SfoI GGCGCC 2 cut(s) 100, 451
SgrDI CGTCGACG 1 cut(s) 179
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 737
SmlI CTYRAG 2 cut(s) 209, 320
SmoI CTYRAG 2 cut(s) 209, 320
Sse9I AATT 4 cut(s) 560, 764, 889, 1035
SsiI CCGC 9 cut(s) 36, 124, 127, 145, 279, 367, 770, 791, 833
SspDI GGCGCC 2 cut(s) 98, 449
SspMI CTAG 2 cut(s) 395, 669
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 4 cut(s) 6, 219, 394, 777
TaaI ACNGT 6 cut(s) 64, 178, 500, 567, 817, 826
TaiI ACGT 3 cut(s) 551, 756, 1121
TaqI TCGA 5 cut(s) 180, 198, 342, 735, 758
TasI AATT 4 cut(s) 560, 764, 889, 1035
TatI WGTACW 1 cut(s) 798
TauI GCSGC 4 cut(s) 38, 129, 282, 793
TfiI GAWTC 2 cut(s) 427, 460
Tru1I TTAA 1 cut(s) 1103
Tru9I TTAA 1 cut(s) 1103
TspDTI ATGAA 3 cut(s) 240, 1023, 1097
TspGWI ACGGA 3 cut(s) 67, 539, 924
VpaK11BI GGWCC 1 cut(s) 496
XceI RCATGY 2 cut(s) 742, 790
XmaJI CCTAGG 1 cut(s) 394
XmiI GTMKAC 4 cut(s) 81, 180, 294, 758
XspI CTAG 2 cut(s) 395, 669
ZraI GACGTC 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.