Rmu_sc0001289.1_g000019
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001289.1
OG0013068
Physical Location & Seq
Reverse (-)
96831 .. 97946
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001289.1_g000019.1.cds

Sequence Viewer

Length: 1116 bp
atggacaagactctccaagccgttctcgccgccaccggaagcttcttcgccataaccgtaatcttcgcctccgtctacttaatctgcaagggcgccaagtccaactcgaccggcagccgccgcacgaaccgggcagtccgcaaccggacgacccagctcaccagaatcaccgtcgacgagagcgcctccttcgatccctctctcaaggtctccatggatgaagtagtcaaggccacgaagaacttcaacaaggacctcgtcgtcggcgacggcggcttcggcctcgtctacaaggcccagctctccgacggcctcaaggtcgccatcaagaagctcgatcccgacgcctttcaaggcttccgcgagtttcgggccgagatggaaaccctaggtaagctctggcaccccaatcttgttaggattctcggatattgcgtgtccggcgccgataggattctgatttacgagtttatggagaggggaaatctggaccgttggctccacgactcctcgtcaacggacttcgatggctatgatgacacgtctgggtgtaaattaccgttatcttggaaaacgaggaataagatcgttaggggcgtggccaatgggttggcctttttgcacagcttggagaagcctataatccatagggatatcaaggctagcaatgttttgttggacagggagtacgaagcccatattgcggatttcgggctcgcgaggagcatcgacatgtcccgttcccacgtgtcgacgcaattcgcgggtaccatggggtacatgccccccgagtacaaagaagggttcacgggggcgaccgtgaaggcggatgtgtatagttttgggattttgatgttggaggttgcgaccggaagacggccgaatttgccgagcgtgtttgacaaaaaagagatgggattggtggaatgggcgaggaaaatggtggcccaaaaccggcaaatggaaatggtggatccgagtatttcaagggaggatttagatgaaggaaatgtcaagaagtattttgaaattgctggtgaatgtgctcatgagtcttcaaggcaaaggcccccaatgaaggatgtcattgagctgttaaaggagcttccgacgtga

Protein Analysis

371

Amino Acids

41.53

Weight (kDa)

8.2

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42440
fragaria_vesca FvH4_2g13190
malus_domestica MD05G1031600.v1.1 MD10G1033200.v1.1
prunus_persica Prupe.8G038700_v2.0.a1
pyrus_communis pycom05g02290 pycom10g02120 pycom10g02140
rosa_chinensis RchiOBHm_Chr6g0274481
rosa_laevigata RLG00000013540
rosa_multiflora Rmu_sc0001289.1_g000019
rosa_roxburghii Rroxscaffold_7G00194200
rosa_rugosa Rorug06G0082100
rosa_samantha Rh6AG198400 Rh6BG201700 Rh6CG202500 Rh6DG192900
rosa_wichuraiana Rw6G017250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
Acc65I GGTACC 1 cut(s) 767
AccB1I GGYRCC 4 cut(s) 92, 402, 443, 767
AccI GTMKAC 4 cut(s) 75, 174, 288, 752
AccII CGCG 3 cut(s) 363, 719, 764
AciI CCGC 9 cut(s) 30, 118, 121, 139, 273, 361, 704, 764, 827
AclWI GGATC 4 cut(s) 188, 332, 968, 981
AcoI YGGCCR 2 cut(s) 600, 878
AcsI RAATTY 1 cut(s) 883
AcvI CACGTG 1 cut(s) 748
AcyI GRCGYC 3 cut(s) 93, 345, 444
AfaI GTAC 4 cut(s) 689, 769, 779, 794
AfiI CCNNNNNNNGG 5 cut(s) 703, 876, 954, 961, 1078
AflIII ACRYGT 3 cut(s) 540, 732, 747
AgsI TTSAA 5 cut(s) 247, 353, 987, 1028, 1059
AhdI GACNNNNNGTC 1 cut(s) 511
AjiI CACGTC 2 cut(s) 543, 1113
AluBI AGCT 8 cut(s) 42, 157, 301, 334, 397, 627, 1093, 1105
AluI AGCT 8 cut(s) 42, 157, 301, 334, 397, 627, 1093, 1105
Alw21I GWGCWC 1 cut(s) 1048
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 4 cut(s) 188, 332, 968, 981
Ama87I CYCGRG 1 cut(s) 788
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 883
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 242
Asp718I GGTACC 1 cut(s) 767
AspA2I CCTAGG 1 cut(s) 388
AspLEI GCGC 3 cut(s) 95, 185, 446
AspS9I GGNCC 6 cut(s) 253, 295, 372, 490, 946, 1068
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 3 cut(s) 151, 160, 1049
AsuNHI GCTAGC 1 cut(s) 662
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 2 cut(s) 253, 490
AvrII CCTAGG 1 cut(s) 388
BalI TGGCCA 1 cut(s) 602
BamHI GGATCC 1 cut(s) 973
BanI GGYRCC 4 cut(s) 92, 402, 443, 767
BanII GRGCYC 1 cut(s) 717
BbrPI CACGTG 1 cut(s) 748
BbsI GAAGAC 2 cut(s) 880, 1047
Bbv12I GWGCWC 1 cut(s) 1048
BbvI GCAGC 1 cut(s) 126
BccI CCATC 4 cut(s) 332, 373, 521, 907
BceAI ACGGC 4 cut(s) 5, 286, 325, 893
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 2 cut(s) 389, 663
BfoI RGCGCY 3 cut(s) 96, 186, 447
BisI GCNGC 5 cut(s) 30, 115, 118, 121, 274
BlnI CCTAGG 1 cut(s) 388
BlsI GCNGC 5 cut(s) 31, 116, 119, 122, 275
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 2 cut(s) 253, 490
BmeRI GACNNNNNGTC 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 788
BmgBI CACGTC 2 cut(s) 543, 1113
BmgT120I GGNCC 6 cut(s) 253, 295, 372, 490, 946, 1068
BmiI GGNNCC 7 cut(s) 94, 404, 445, 500, 769, 975, 1070
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 735
BmtI GCTAGC 1 cut(s) 666
BpiI GAAGAC 2 cut(s) 880, 1047
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpuEI CTTGAG 2 cut(s) 188, 299
BpuMI CCSGG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 748
BsaHI GRCGYC 3 cut(s) 93, 345, 444
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 3 cut(s) 213, 388, 771
BsaWI WCCGGW 3 cut(s) 35, 144, 869
Bsc4I CCNNNNNNNGG 5 cut(s) 703, 876, 954, 961, 1078
Bse118I RCCGGY 2 cut(s) 110, 954
Bse3DI GCAATG 1 cut(s) 673
BseDI CCNNGG 3 cut(s) 213, 388, 771
BseGI GGATG 3 cut(s) 223, 835, 1087
BseLI CCNNNNNNNGG 5 cut(s) 703, 876, 954, 961, 1078
BseMI GCAATG 1 cut(s) 673
BseRI GAGGAG 2 cut(s) 499, 736
BseX3I CGGCCG 1 cut(s) 878
BseXI GCAGC 1 cut(s) 126
BseYI CCCAGC 2 cut(s) 153, 297
Bsh1236I CGCG 3 cut(s) 363, 719, 764
Bsh1285I CGRYCG 4 cut(s) 111, 819, 870, 881
BshNI GGYRCC 4 cut(s) 92, 402, 443, 767
BsiEI CGRYCG 4 cut(s) 111, 819, 870, 881
BsiHKAI GWGCWC 1 cut(s) 1048
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 7 cut(s) 36, 111, 130, 145, 441, 870, 955
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 5 cut(s) 703, 876, 954, 961, 1078
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 721
Bso31I GGTCTC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 2 cut(s) 717, 1048
Bsp143I GATC 4 cut(s) 193, 337, 585, 973
Bsp19I CCATGG 2 cut(s) 213, 771
Bsp68I TCGCGA 1 cut(s) 719
BspACI CCGC 9 cut(s) 30, 118, 121, 139, 273, 361, 704, 764, 827
BspFNI CGCG 3 cut(s) 363, 719, 764
BspHI TCATGA 1 cut(s) 1048
BspLI GGNNCC 7 cut(s) 94, 404, 445, 500, 769, 975, 1070
BspOI GCTAGC 1 cut(s) 666
BspPI GGATC 4 cut(s) 188, 332, 968, 981
BspT107I GGYRCC 4 cut(s) 92, 402, 443, 767
BspTNI GGTCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 673
BsrFI RCCGGY 2 cut(s) 110, 954
BssAI RCCGGY 2 cut(s) 110, 954
BssECI CCNNGG 3 cut(s) 213, 388, 771
BssMI GATC 4 cut(s) 193, 337, 585, 973
BssNI GRCGYC 3 cut(s) 93, 345, 444
BssT1I CCWWGG 3 cut(s) 213, 388, 771
Bst4CI ACNGT 5 cut(s) 58, 172, 494, 561, 820
BstACI GRCGYC 3 cut(s) 93, 345, 444
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 2 cut(s) 664, 717
BstDSI CCRYGG 2 cut(s) 213, 771
BstF5I GGATG 3 cut(s) 223, 835, 1087
BstFNI CGCG 3 cut(s) 363, 719, 764
BstH2I RGCGCY 3 cut(s) 96, 186, 447
BstHHI GCGC 3 cut(s) 95, 185, 446
BstKTI GATC 4 cut(s) 196, 340, 588, 976
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 4 cut(s) 193, 337, 585, 973
BstMCI CGRYCG 4 cut(s) 111, 819, 870, 881
BstMWI GCNNNNNNNGC 7 cut(s) 26, 120, 273, 279, 441, 701, 886
BstNSI RCATGY 2 cut(s) 736, 784
BstSCI CCNGG 1 cut(s) 129
BstUI CGCG 3 cut(s) 363, 719, 764
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 2 cut(s) 880, 1047
BstX2I RGATCY 1 cut(s) 973
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 973
BstZI CGGCCG 1 cut(s) 878
BtgI CCRYGG 2 cut(s) 213, 771
BtrI CACGTC 2 cut(s) 543, 1113
BtsCI GGATG 3 cut(s) 223, 835, 1087
BtuMI TCGCGA 1 cut(s) 719
Cac8I GCNNGC 2 cut(s) 664, 717
CciI TCATGA 1 cut(s) 1048
CfoI GCGC 3 cut(s) 95, 185, 446
Cfr10I RCCGGY 2 cut(s) 110, 954
Cfr13I GGNCC 6 cut(s) 253, 295, 372, 490, 946, 1068
CseI GACGC 2 cut(s) 353, 763
Csp6I GTAC 4 cut(s) 688, 768, 778, 793
CviAII CATG 5 cut(s) 214, 733, 772, 781, 1049
CviQI GTAC 4 cut(s) 688, 768, 778, 793
DinI GGCGCC 2 cut(s) 94, 445
DpnI GATC 4 cut(s) 195, 339, 587, 975
DpnII GATC 4 cut(s) 193, 337, 585, 973
DrdI GACNNNNNNGTC 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 600, 878
EagI CGGCCG 1 cut(s) 878
Eam1105I GACNNNNNGTC 1 cut(s) 511
EciI GGCGGA 1 cut(s) 842
EclXI CGGCCG 1 cut(s) 878
Eco130I CCWWGG 3 cut(s) 213, 388, 771
Eco24I GRGCYC 1 cut(s) 717
Eco31I GGTCTC 1 cut(s) 214
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 2 cut(s) 253, 490
Eco52I CGGCCG 1 cut(s) 878
Eco72I CACGTG 1 cut(s) 748
Eco88I CYCGRG 1 cut(s) 788
EcoO109I RGGNCCY 2 cut(s) 253, 1068
EcoRV GATATC 1 cut(s) 655
EcoT14I CCWWGG 3 cut(s) 213, 388, 771
EcoT38I GRGCYC 1 cut(s) 717
EgeI GGCGCC 2 cut(s) 94, 445
EheI GGCGCC 2 cut(s) 94, 445
ErhI CCWWGG 3 cut(s) 213, 388, 771
FaeI CATG 5 cut(s) 217, 736, 775, 784, 1052
FaqI GGGAC 1 cut(s) 721
FatI CATG 5 cut(s) 213, 732, 771, 780, 1048
FauI CCCGC 1 cut(s) 757
FblI GTMKAC 4 cut(s) 75, 174, 288, 752
Fnu4HI GCNGC 5 cut(s) 30, 115, 118, 121, 274
FokI GGATG 3 cut(s) 230, 842, 1094
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 5 cut(s) 30, 115, 118, 121, 274
FspBI CTAG 2 cut(s) 389, 663
GlaI GCGC 3 cut(s) 94, 184, 445
GluI GCNGC 5 cut(s) 30, 115, 118, 121, 274
GsaI CCCAGC 2 cut(s) 157, 301
HaeII RGCGCY 3 cut(s) 96, 186, 447
HapII CCGG 7 cut(s) 36, 111, 130, 145, 441, 870, 955
HgaI GACGC 2 cut(s) 353, 763
HhaI GCGC 3 cut(s) 95, 185, 446
Hin1I GRCGYC 3 cut(s) 93, 345, 444
Hin1II CATG 5 cut(s) 217, 736, 775, 784, 1052
Hin6I GCGC 3 cut(s) 93, 183, 444
HinP1I GCGC 3 cut(s) 93, 183, 444
HincII GTYRAC 3 cut(s) 175, 516, 753
HindII GTYRAC 3 cut(s) 175, 516, 753
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 6 cut(s) 10, 165, 421, 454, 506, 1052
HpaII CCGG 7 cut(s) 36, 111, 130, 145, 441, 870, 955
HphI GGTGA 3 cut(s) 151, 160, 1049
Hpy166II GTNNAC 6 cut(s) 76, 175, 289, 516, 753, 807
Hpy188I TCNGA 5 cut(s) 307, 428, 459, 978, 1110
Hpy188III TCNNGA 6 cut(s) 328, 341, 488, 718, 1015, 1049
Hpy8I GTNNAC 6 cut(s) 76, 175, 289, 516, 753, 807
Hpy99I CGWCG 9 cut(s) 176, 179, 263, 266, 272, 311, 347, 757, 1114
HpyAV CCTTC 5 cut(s) 199, 794, 817, 998, 1072
HpyCH4III ACNGT 5 cut(s) 58, 172, 494, 561, 820
HpyCH4IV ACGT 3 cut(s) 542, 747, 1112
HpyCH4V TGCA 2 cut(s) 87, 622
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 120, 273, 279, 441, 701, 886
HpySE526I ACGT 3 cut(s) 542, 747, 1112
Hsp92I GRCGYC 3 cut(s) 93, 345, 444
Hsp92II CATG 5 cut(s) 217, 736, 775, 784, 1052
HspAI GCGC 3 cut(s) 93, 183, 444
KasI GGCGCC 2 cut(s) 92, 443
KpnI GGTACC 1 cut(s) 771
Kzo9I GATC 4 cut(s) 193, 337, 585, 973
LmnI GCTCC 3 cut(s) 504, 723, 1102
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 735
MaeI CTAG 2 cut(s) 389, 663
MaeII ACGT 3 cut(s) 542, 747, 1112
MalI GATC 4 cut(s) 195, 339, 587, 975
MboI GATC 4 cut(s) 193, 337, 585, 973
MboII GAAGA 5 cut(s) 37, 55, 250, 885, 1047
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 2 cut(s) 717, 1048
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 4 cut(s) 554, 758, 883, 1029
MluNI TGGCCA 1 cut(s) 602
Mly113I GGCGCC 2 cut(s) 93, 444
MlyI GAGTC 3 cut(s) 4, 500, 1061
MmeI TCCRAC 4 cut(s) 126, 330, 657, 837
Mox20I TGGCCA 1 cut(s) 602
MroXI GAANNNNTTC 1 cut(s) 242
MscI TGGCCA 1 cut(s) 602
MseI TTAA 2 cut(s) 80, 1097
MslI CAYNNNNRTG 1 cut(s) 731
Msp20I TGGCCA 1 cut(s) 602
MspI CCGG 7 cut(s) 36, 111, 130, 145, 441, 870, 955
MspR9I CCNGG 1 cut(s) 131
MvnI CGCG 3 cut(s) 363, 719, 764
MwoI GCNNNNNNNGC 7 cut(s) 26, 120, 273, 279, 441, 701, 886
NarI GGCGCC 2 cut(s) 93, 444
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 2 cut(s) 213, 771
NdeII GATC 4 cut(s) 193, 337, 585, 973
NheI GCTAGC 1 cut(s) 662
NlaIII CATG 5 cut(s) 217, 736, 775, 784, 1052
NlaIV GGNNCC 7 cut(s) 94, 404, 445, 500, 769, 975, 1070
NmeAIII GCCGAG 2 cut(s) 400, 915
NruI TCGCGA 1 cut(s) 719
NspI RCATGY 2 cut(s) 736, 784
PagI TCATGA 1 cut(s) 1048
PciI ACATGT 1 cut(s) 732
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 264, 432, 594
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 165, 421, 454
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 5 cut(s) 31, 116, 119, 122, 275
PleI GAGTC 3 cut(s) 4, 500, 1060
PluTI GGCGCC 2 cut(s) 96, 447
PmaCI CACGTG 1 cut(s) 748
PmlI CACGTG 1 cut(s) 748
PpsI GAGTC 3 cut(s) 4, 500, 1060
Ppu21I YACGTR 1 cut(s) 748
PpuMI RGGWCCY 1 cut(s) 253
PscI ACATGT 1 cut(s) 732
Psp5II RGGWCCY 1 cut(s) 253
PspCI CACGTG 1 cut(s) 748
PspFI CCCAGC 2 cut(s) 153, 297
PspN4I GGNNCC 7 cut(s) 94, 404, 445, 500, 769, 975, 1070
PspPI GGNCC 6 cut(s) 253, 295, 372, 490, 946, 1068
PspPPI RGGWCCY 1 cut(s) 253
PsuI RGATCY 1 cut(s) 973
PsyI GACNNNGTC 1 cut(s) 257
RruI TCGCGA 1 cut(s) 719
RsaI GTAC 4 cut(s) 689, 769, 779, 794
RsaNI GTAC 4 cut(s) 688, 768, 778, 793
RseI CAYNNNNRTG 1 cut(s) 731
SalI GTCGAC 2 cut(s) 173, 751
SaqAI TTAA 2 cut(s) 80, 1097
SatI GCNGC 5 cut(s) 30, 115, 118, 121, 274
Sau3AI GATC 4 cut(s) 193, 337, 585, 973
Sau96I GGNCC 6 cut(s) 253, 295, 372, 490, 946, 1068
SchI GAGTC 3 cut(s) 4, 500, 1061
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 717, 1048
SfaNI GCATC 1 cut(s) 735
SfoI GGCGCC 2 cut(s) 94, 445
SgrDI CGTCGACG 1 cut(s) 173
SinI GGWCC 2 cut(s) 253, 490
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 2 cut(s) 203, 314
SmoI CTYRAG 2 cut(s) 203, 314
Sse9I AATT 4 cut(s) 554, 758, 883, 1029
SsiI CCGC 9 cut(s) 30, 118, 121, 139, 273, 361, 704, 764, 827
SspDI GGCGCC 2 cut(s) 92, 443
SspMI CTAG 2 cut(s) 389, 663
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 3 cut(s) 213, 388, 771
TaaI ACNGT 5 cut(s) 58, 172, 494, 561, 820
TaiI ACGT 3 cut(s) 545, 750, 1115
TaqI TCGA 7 cut(s) 107, 174, 192, 336, 525, 729, 752
TasI AATT 4 cut(s) 554, 758, 883, 1029
TatI WGTACW 1 cut(s) 792
TauI GCSGC 4 cut(s) 32, 120, 123, 276
TfiI GAWTC 3 cut(s) 165, 421, 454
Tru1I TTAA 2 cut(s) 80, 1097
Tru9I TTAA 2 cut(s) 80, 1097
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 3 cut(s) 234, 1017, 1091
TspGWI ACGGA 2 cut(s) 61, 533
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 253, 490
XapI RAATTY 1 cut(s) 883
XceI RCATGY 2 cut(s) 736, 784
XmaJI CCTAGG 1 cut(s) 388
XmiI GTMKAC 4 cut(s) 75, 174, 288, 752
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 2 cut(s) 389, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.