Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013068

Physical Location & Seq

Genomic Coordinates Reverse (-)

10896754 .. 10898097

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0082100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGTCATTGAGAGTTTCTAGAACAAGGTTTTCAGGATACTTCCCTTTTTCAATTGAAAAGCTTGATTCACTGAATGAGTTTGTGGCTAGTCGTTGCAATTTTTCAGGTTTGCTTCCGTCTTCACTCGGTAATCTTAGGCGGCTGGTTTATTTAGACCTTTCAAATAACACACTTACTGGCTCAATCCCTGCTTCTTTGGAAACCCTTACCCAACTGTCATATCTGTTACTTGATAATAATCATTTCAGTGGTTACATCCCGCCTTCTCTTGGAAATCTAACCCAGCTCACAACACTTTCGCTTGCATCAAATCAATTAACTGGTGCAATCCCATCTTCTCTAGGAAACCTCACCCAGCTCACTGAGTTAGACCTTTCTGGTAATGATTTCGATGGTCACATCCCGTCTTCCATCGGAGATCTCAACCAGCTCATAACACTTTCACTTCCGATGAATCAATTAACTGGGCCAATCCCATCTTCTCTAGGCAATCTTAGCAAACTAACTGCTCTAGATCTTTCTTCAAATAATTTGCACAGTTCCATTCCCGAGTCCATATCCAATCTCACGAATCTCGAGTATCTTTATCTAAATAATAATAGTTTGAGCGGCAAAGTAAATTTCCAAATGTTTCAAAAGTTCCAAAATCTCCTCGTACTGTATTTATCTGGAAATAAATTGGAATTATTGTTCGAAGAGACAAGGTTTCTGAATGCAACAGCAACTTTTCCAAACCTAATGACTCTAGGATTGGGTTCTTGCAACATAACAGAGTTCCCAAGGTTCCTAAGATACCAAGAAAATTTGAGGTGGCTCGATCTTGCTGAGAATGGAATGCATGGTCAAGTACCGAAATGGATGTGGAACGTAAGCACAGAAAATTTGACAGTCATGAACATTTCTCATAATTACTTCCTTTCCGGCTTTGACCAACCTCCAGTTGTTCTTTCGTGGAGCGGCCTACAACTCTTGGATCTCTCGTCCAACATGATTCAGGGATCACCACTGATACCTTCACCATCCATTGAGTACTATCTGATTTCAAACAATAAGCTAAGTGGAAAACTTTTGCCTTTGATTTGCAATCTGACATCTCTGAATTACCTTGATTTGTCAGATAACAAGTTGAGTGGCATGCTTCCGCAGTGTCTTGGGAACTTCAGTGATAATCTGGGAGTTTTAGACCTTGGAAACAACTCTTTTGAAGGCCATCTCCCTCAAACATACACCAGAAATCTGACGATGTTTGATGCTAGTGATAACAAATTGCAGGGGACATTACCAAGGTCATTGGCGAATTGCGTAATGCTCAAATTTCTTGTTCTGTCAATTGTCAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

447

Amino Acids

49.43

Weight (kDa)

5.26

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	30 - 82	6.8e-07	Leucine rich repeat
LRR_14	PF23598	38 - 127	1.6e-11	Leucine-rich repeat region
LRR_8	PF13855	91 - 130	2.4e-06	Leucine rich repeat
LRR_4	PF12799	94 - 132	8.2e-08	Leucine Rich repeats (2 copies)
LRR_14	PF23598	114 - 301	1.5e-13	Leucine-rich repeat region
LRR_8	PF13855	144 - 202	1.5e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42440
fragaria_vesca	FvH4_2g13190
malus_domestica	MD05G1031600.v1.1 MD10G1033200.v1.1
prunus_persica	Prupe.8G038700_v2.0.a1
pyrus_communis	pycom05g02290 pycom10g02120 pycom10g02140
rosa_chinensis	RchiOBHm_Chr6g0274481
rosa_laevigata	RLG00000013540
rosa_multiflora	Rmu_sc0001289.1_g000019
rosa_roxburghii	Rroxscaffold_7G00194200
rosa_rugosa	Rorug06G0082100
rosa_samantha	Rh6AG198400 Rh6BG201700 Rh6CG202500 Rh6DG192900
rosa_wichuraiana	Rw6G017250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	609, 957
AciI	CCGC	5 cut(s)	139, 260, 609, 957, 1142
AclWI	GGATC	2 cut(s)	981, 1006
AcsI	RAATTY	4 cut(s)	619, 802, 880, 1313
AcuI	CTGAAG	1 cut(s)	1144
AfaI	GTAC	3 cut(s)	657, 849, 1031
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	7 cut(s)	51, 56, 162, 525, 635, 1044, 1205
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AloI	GAACNNNNNNTCC	2 cut(s)	674, 706
AluBI	AGCT	5 cut(s)	61, 286, 358, 430, 1054
AluI	AGCT	5 cut(s)	61, 286, 358, 430, 1054
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	2 cut(s)	981, 1006
Ama87I	CYCGRG	2 cut(s)	548, 575
AoxI	GGCC	3 cut(s)	467, 958, 1207
ApoI	RAATTY	4 cut(s)	619, 802, 880, 1313
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	343, 993, 1008
AsuII	TTCGAA	1 cut(s)	693
AvaI	CYCGRG	2 cut(s)	548, 575
BbsI	GAAGAC	2 cut(s)	111, 399
BccI	CCATC	6 cut(s)	340, 386, 419, 484, 1027, 1218
BciVI	GTATCC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	7 cut(s)	18, 87, 341, 485, 512, 746, 1254
BfuI	GTATCC	1 cut(s)	29
BglII	AGATCT	2 cut(s)	418, 514
BisI	GCNGC	3 cut(s)	140, 610, 958
BlsI	GCNGC	3 cut(s)	141, 611, 959
BmcAI	AGTACT	1 cut(s)	1031
BmeT110I	CYCGRG	2 cut(s)	548, 575
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	785
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	314, 1240
BmuI	ACTGGG	1 cut(s)	474
BpiI	GAAGAC	2 cut(s)	111, 399
BpmI	CTGGAG	1 cut(s)	921
Bpu14I	TTCGAA	1 cut(s)	693
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	779, 1186, 1283
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	4 cut(s)	181, 325, 469, 938
Bse8I	GATNNNNATC	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	779, 1186, 1283
BseGI	GGATG	4 cut(s)	255, 399, 864, 1019
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	354, 816
BseNI	ACTGG	4 cut(s)	181, 325, 469, 938
BseRI	GAGGAG	1 cut(s)	641
BseYI	CCCAGC	2 cut(s)	282, 354
BshFI	GGCC	3 cut(s)	469, 960, 1209
BsiHKCI	CYCGRG	2 cut(s)	548, 575
BsiSI	CCGG	1 cut(s)	921
BslFI	GGGAC	1 cut(s)	1288
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	1288
BsmI	GAATGC	2 cut(s)	718, 840
BsnI	GGCC	3 cut(s)	469, 960, 1209
BsoBI	CYCGRG	2 cut(s)	548, 575
Bsp119I	TTCGAA	1 cut(s)	693
Bsp143I	GATC	5 cut(s)	418, 514, 817, 973, 998
BspACI	CCGC	5 cut(s)	139, 260, 609, 957, 1142
BspANI	GGCC	3 cut(s)	469, 960, 1209
BspCNI	CTCAG	2 cut(s)	355, 817
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	1 cut(s)	785
BspPI	GGATC	2 cut(s)	981, 1006
BspT104I	TTCGAA	1 cut(s)	693
BsrBI	CCGCTC	2 cut(s)	609, 957
BsrI	ACTGG	4 cut(s)	181, 325, 469, 938
BssECI	CCNNGG	3 cut(s)	779, 1186, 1283
BssMI	GATC	5 cut(s)	418, 514, 817, 973, 998
BssT1I	CCWWGG	3 cut(s)	779, 1186, 1283
Bst4CI	ACNGT	4 cut(s)	216, 539, 660, 889
Bst6I	CTCTTC	1 cut(s)	690
BstBI	TTCGAA	1 cut(s)	693
BstC8I	GCNNGC	2 cut(s)	303, 1136
BstDEI	CTNAG	6 cut(s)	134, 363, 494, 788, 825, 1055
BstF5I	GGATG	4 cut(s)	255, 399, 864, 1019
BstKTI	GATC	5 cut(s)	421, 517, 820, 976, 1001
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	5 cut(s)	418, 514, 817, 973, 998
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNSI	RCATGY	1 cut(s)	1138
BstV2I	GAAGAC	2 cut(s)	111, 399
BstX2I	RGATCY	3 cut(s)	418, 514, 973
BstYI	RGATCY	3 cut(s)	418, 514, 973
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	469, 960, 1209
BtsCI	GGATG	4 cut(s)	255, 399, 864, 1019
BtsI	GCAGTG	1 cut(s)	1151
BtsIMutI	CAGTG	6 cut(s)	68, 253, 360, 1004, 1151, 1168
Cac8I	GCNNGC	2 cut(s)	303, 1136
CciI	TCATGA	1 cut(s)	891
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	656, 848, 1030
CspCI	CAANNNNNGTGG	2 cut(s)	1111, 1146
CviAII	CATG	4 cut(s)	839, 892, 988, 1135
CviQI	GTAC	3 cut(s)	656, 848, 1030
DdeI	CTNAG	6 cut(s)	134, 363, 494, 788, 825, 1055
DpnI	GATC	5 cut(s)	420, 516, 819, 975, 1000
DpnII	GATC	5 cut(s)	418, 514, 817, 973, 998
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Eco130I	CCWWGG	3 cut(s)	779, 1186, 1283
Eco57I	CTGAAG	1 cut(s)	1144
Eco88I	CYCGRG	2 cut(s)	548, 575
EcoT14I	CCWWGG	3 cut(s)	779, 1186, 1283
EcoT22I	ATGCAT	1 cut(s)	840
ErhI	CCWWGG	3 cut(s)	779, 1186, 1283
FaeI	CATG	4 cut(s)	842, 895, 991, 1138
FaqI	GGGAC	1 cut(s)	1288
FatI	CATG	4 cut(s)	838, 891, 987, 1134
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	140, 610, 958
FokI	GGATG	4 cut(s)	242, 386, 871, 1006
Fsp4HI	GCNGC	3 cut(s)	140, 610, 958
FspBI	CTAG	7 cut(s)	18, 87, 341, 485, 512, 746, 1254
GluI	GCNGC	3 cut(s)	140, 610, 958
GsaI	CCCAGC	2 cut(s)	286, 358
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	3 cut(s)	469, 960, 1209
HapII	CCGG	1 cut(s)	921
Hin1II	CATG	4 cut(s)	842, 895, 991, 1138
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	6 cut(s)	65, 454, 551, 571, 742, 991
HpaII	CCGG	1 cut(s)	921
HphI	GGTGA	3 cut(s)	343, 993, 1008
Hpy188I	TCNGA	8 cut(s)	416, 450, 711, 1038, 1089, 1098, 1117, 1239
Hpy188III	TCNNGA	8 cut(s)	18, 33, 512, 548, 568, 575, 669, 892
HpyAV	CCTTC	3 cut(s)	273, 1023, 1199
HpyCH4III	ACNGT	4 cut(s)	216, 539, 660, 889
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	9 cut(s)	96, 305, 326, 535, 716, 762, 838, 1083, 1270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	6 cut(s)	134, 363, 494, 788, 825, 1055
HpySE526I	ACGT	1 cut(s)	867
Hsp92II	CATG	4 cut(s)	842, 895, 991, 1138
Kzo9I	GATC	5 cut(s)	418, 514, 817, 973, 998
LmnI	GCTCC	1 cut(s)	954
LweI	GCATC	2 cut(s)	314, 1240
MaeI	CTAG	7 cut(s)	18, 87, 341, 485, 512, 746, 1254
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	3 cut(s)	225, 251, 395
MalI	GATC	5 cut(s)	420, 516, 819, 975, 1000
MbiI	CCGCTC	2 cut(s)	609, 957
MboI	GATC	5 cut(s)	418, 514, 817, 973, 998
MboII	GAAGA	6 cut(s)	111, 327, 399, 471, 513, 707
MfeI	CAATTG	2 cut(s)	51, 1329
MflI	RGATCY	3 cut(s)	418, 514, 973
MlyI	GAGTC	2 cut(s)	560, 736
MmeI	TCCRAC	1 cut(s)	1008
MnlI	CCTC	5 cut(s)	359, 662, 801, 945, 1227
Mph1103I	ATGCAT	1 cut(s)	840
MseI	TTAA	2 cut(s)	317, 461
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	921
MunI	CAATTG	2 cut(s)	51, 1329
Mva1269I	GAATGC	2 cut(s)	718, 840
MwoI	GCNNNNNNNGC	1 cut(s)	495
NdeII	GATC	5 cut(s)	418, 514, 817, 973, 998
NlaIII	CATG	4 cut(s)	842, 895, 991, 1138
NlaIV	GGNNCC	1 cut(s)	785
NmuCI	GTSAC	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	840
NspI	RCATGY	1 cut(s)	1138
NspV	TTCGAA	1 cut(s)	693
PaeI	GCATGC	1 cut(s)	1138
PaeR7I	CTCGAG	1 cut(s)	575
PagI	TCATGA	1 cut(s)	891
PctI	GAATGC	2 cut(s)	718, 840
PfeI	GAWTC	4 cut(s)	65, 454, 571, 991
PkrI	GCNGC	3 cut(s)	141, 611, 959
PleI	GAGTC	2 cut(s)	559, 736
PpsI	GAGTC	2 cut(s)	559, 736
PspFI	CCCAGC	2 cut(s)	282, 354
PspN4I	GGNNCC	1 cut(s)	785
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	3 cut(s)	418, 514, 973
RsaI	GTAC	3 cut(s)	657, 849, 1031
RsaNI	GTAC	3 cut(s)	656, 848, 1030
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	317, 461
SatI	GCNGC	3 cut(s)	140, 610, 958
Sau3AI	GATC	5 cut(s)	418, 514, 817, 973, 998
Sau96I	GGNCC	1 cut(s)	467
ScaI	AGTACT	1 cut(s)	1031
SchI	GAGTC	2 cut(s)	560, 736
SfaNI	GCATC	2 cut(s)	314, 1240
Sfr274I	CTCGAG	1 cut(s)	575
SfuI	TTCGAA	1 cut(s)	693
SlaI	CTCGAG	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	1138
SsiI	CCGC	5 cut(s)	139, 260, 609, 957, 1142
SspMI	CTAG	7 cut(s)	18, 87, 341, 485, 512, 746, 1254
StyI	CCWWGG	3 cut(s)	779, 1186, 1283
TaaI	ACNGT	4 cut(s)	216, 539, 660, 889
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	4 cut(s)	390, 576, 693, 816
TatI	WGTACW	1 cut(s)	1029
TauI	GCSGC	3 cut(s)	142, 612, 960
TfiI	GAWTC	4 cut(s)	65, 454, 571, 991
Tru1I	TTAA	2 cut(s)	317, 461
Tru9I	TTAA	2 cut(s)	317, 461
TscAI	CASTG	6 cut(s)	75, 253, 367, 1011, 1151, 1168
TseFI	GTSAC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	467, 908
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	6 cut(s)	75, 253, 367, 1011, 1151, 1168
XapI	RAATTY	4 cut(s)	619, 802, 880, 1313
XbaI	TCTAGA	2 cut(s)	17, 511
XceI	RCATGY	1 cut(s)	1138
XhoI	CTCGAG	1 cut(s)	575
XspI	CTAG	7 cut(s)	18, 87, 341, 485, 512, 746, 1254
ZrmI	AGTACT	1 cut(s)	1031
Zsp2I	ATGCAT	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.