AT5G42610

Mitochondrial calcium uniporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012447
Physical Location & Seq
Forward (+)
17062455 .. 17064047
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42610.1

Sequence Viewer

Length: 882 bp
ATGGCTCTACGCAGAGCAATCACTAAACGTCTCATTGACTGTTACAGATCCGATGTAACACAACAACACTCATTTTTCAGACAACTCTCACCCTATAACATGAAGATCCATCGTCAGTACATGACTTCACCTAATGGTCCGAATCTTACGGACCGGATTGTCGGGATCCGCATCGAGTCCGTTTCTCCGCCGAGGCGGGAGGAAACACCGGTGATGGGTTTATCAGTTAGTGAGACTAAGAAGTTGTTGAGGCTATATCAAATGGAGAAAGTGAAAGAGAGACTCAGAGAGATTCCTAAAAGCTCTGTTTCTTATTGGGAATTTATTCAGATCTGTTGTGAGAGTTGTGGGAATGATGAGCAAGGTTCTCAAATGGCTAAGTCTTTGGATCATTCGGGATGTGTCGTCGTTTTAGGAGACATAGTTTTTCTTCATCCCCATCAGATAGCCAAGTCTATGGAGGCAATGATCAAGCAAACATCAGTACTTCCAAACGATCCAAGGAAAGAAGAGTTAGTTCAGCTTGCGACTACAAAGAAGAGTATTGACATAGAGGCACGACGTATAGTGCAGGCCGAGTTATATTGTGGTCTCGGTTTCCTAGCTGTGCAAACTATAGGCTTTATGCGTCTTACCTTTTGGGAACTAAGCTGGGACGTAATGGAACCCATCTGCTTCTTTGTCACAACCATTCATTTCATCCTCGGTTACATCTTTTTTCTTCGGACATCGACGGAACCATCATTCGAAGGACTTTTTCGACAGCGGTTTAAGACCAAACAGAAGAAGCTTATGGAGAGGCATGGATTTGATTTTCTGAGGTACAATGAGCTCAACTCTTTGTTCACAACATTTCCGTGTAAATTTCATTATCCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0006810 GO:0008150 GO:0015291 GO:0015292 GO:0022804 GO:0022857 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
ko04020 ko04218 ko04621 map04020 map04218 map04621
Pfam Domains
Protein Families
MCU

Protein Analysis

293

Amino Acids

34.26

Weight (kDa)

9.15

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCU PF04678 120 - 278 3.2e-49 Mitochondrial calcium uniporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42610
fragaria_vesca FvH4_2g40260
malus_domestica MD00G1134100.v1.1 MD08G1036100.v1.1 MD15G1032500.v1.1
prunus_persica Prupe.1G383500_v2.0.a1
pyrus_communis pycom08g02890 pycom15g02820
rosa_chinensis RchiOBHm_Chr6g0300501
rosa_laevigata RLG00000011332
rosa_multiflora Rmu_co8175312.1_g000001 Rmu_sc0001476.1_g000012
rosa_roxburghii Rroxscaffold_7G00167730
rosa_rugosa Rorug06G0296500
rosa_samantha Rh6AG409100 Rh6BG416400 Rh6CG424000 Rh6DG409600
rosa_wichuraiana Rw6G035800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AciI CCGC 4 cut(s) 169, 188, 196, 766
AclWI GGATC 6 cut(s) 42, 100, 160, 173, 396, 491
AcsI RAATTY 2 cut(s) 320, 863
AfaI GTAC 3 cut(s) 119, 486, 824
AfiI CCNNNNNNNGG 1 cut(s) 215
AgeI ACCGGT 1 cut(s) 208
AluBI AGCT 6 cut(s) 303, 523, 605, 651, 790, 832
AluI AGCT 6 cut(s) 303, 523, 605, 651, 790, 832
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 5 cut(s) 35, 227, 274, 411, 596
AlwI GGATC 6 cut(s) 42, 100, 160, 173, 396, 491
AoxI GGCC 1 cut(s) 573
ApoI RAATTY 2 cut(s) 320, 863
AsiGI ACCGGT 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 137, 151
AsuHPI GGTGA 3 cut(s) 81, 120, 223
AsuII TTCGAA 1 cut(s) 747
AvaII GGWCC 2 cut(s) 137, 151
BamHI GGATCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 834
Bbv12I GWGCWC 1 cut(s) 834
BccI CCATC 5 cut(s) 117, 208, 447, 677, 748
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 5 cut(s) 35, 227, 274, 411, 596
BfaI CTAG 1 cut(s) 602
BfmI CTRYAG 1 cut(s) 615
BglII AGATCT 1 cut(s) 330
BmcAI AGTACT 1 cut(s) 486
Bme18I GGWCC 2 cut(s) 137, 151
BmgT120I GGNCC 2 cut(s) 137, 151
BmiI GGNNCC 3 cut(s) 167, 666, 738
BmsI GCATC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 821, 853
Bpu14I TTCGAA 1 cut(s) 747
BsaBI GATNNNNATC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 3 cut(s) 191, 500, 703
BsaWI WCCGGW 3 cut(s) 153, 208, 874
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 471
Bse8I GATNNNNATC 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 191, 500, 703
BseGI GGATG 3 cut(s) 404, 433, 699
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 2 cut(s) 298, 809
BseYI CCCAGC 1 cut(s) 651
BsgI GTGCAG 1 cut(s) 590
BshFI GGCC 1 cut(s) 575
BshTI ACCGGT 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 834
BsiSI CCGG 3 cut(s) 154, 209, 875
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 5 cut(s) 35, 227, 274, 411, 596
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 1 cut(s) 575
Bso31I GGTCTC 1 cut(s) 596
Bsp119I TTCGAA 1 cut(s) 747
Bsp1286I GDGCHC 1 cut(s) 834
Bsp143I GATC 7 cut(s) 47, 105, 165, 330, 388, 468, 496
BspACI CCGC 4 cut(s) 169, 188, 196, 766
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 2 cut(s) 297, 810
BspLI GGNNCC 3 cut(s) 167, 666, 738
BspPI GGATC 6 cut(s) 42, 100, 160, 173, 396, 491
BspT104I TTCGAA 1 cut(s) 747
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 191, 500, 703
BssMI GATC 7 cut(s) 47, 105, 165, 330, 388, 468, 496
BssT1I CCWWGG 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 2 cut(s) 504, 533
BstBI TTCGAA 1 cut(s) 747
BstC8I GCNNGC 2 cut(s) 525, 573
BstDEI CTNAG 5 cut(s) 237, 284, 378, 647, 818
BstF5I GGATG 3 cut(s) 404, 433, 699
BstKTI GATC 7 cut(s) 50, 108, 168, 333, 391, 471, 499
BstMAI GTCTC 5 cut(s) 35, 227, 274, 411, 596
BstMBI GATC 7 cut(s) 47, 105, 165, 330, 388, 468, 496
BstSFI CTRYAG 1 cut(s) 615
BstX2I RGATCY 4 cut(s) 47, 105, 165, 330
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 4 cut(s) 47, 105, 165, 330
BsuRI GGCC 1 cut(s) 575
BtsCI GGATG 3 cut(s) 404, 433, 699
Cac8I GCNNGC 2 cut(s) 525, 573
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 137, 151
CpoI CGGWCCG 1 cut(s) 151
CseI GACGC 1 cut(s) 617
Csp6I GTAC 3 cut(s) 118, 485, 823
CspAI ACCGGT 1 cut(s) 208
CspI CGGWCCG 1 cut(s) 151
CviAII CATG 3 cut(s) 100, 121, 803
CviQI GTAC 3 cut(s) 118, 485, 823
DdeI CTNAG 5 cut(s) 237, 284, 378, 647, 818
DpnI GATC 7 cut(s) 49, 107, 167, 332, 390, 470, 498
DpnII GATC 7 cut(s) 47, 105, 165, 330, 388, 468, 496
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 2 cut(s) 504, 533
EarI CTCTTC 2 cut(s) 504, 533
EciI GGCGGA 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 832
Eco130I CCWWGG 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 834
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 2 cut(s) 137, 151
Eco53kI GAGCTC 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 832
EcoT14I CCWWGG 1 cut(s) 500
EcoT38I GRGCYC 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 500
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 3 cut(s) 103, 124, 806
FaqI GGGAC 1 cut(s) 668
FatI CATG 3 cut(s) 99, 120, 802
FauI CCCGC 1 cut(s) 189
FbaI TGATCA 1 cut(s) 468
FokI GGATG 3 cut(s) 411, 420, 686
FriOI GRGCYC 1 cut(s) 834
FspBI CTAG 1 cut(s) 602
GsaI CCCAGC 1 cut(s) 655
HaeIII GGCC 1 cut(s) 575
HapII CCGG 3 cut(s) 154, 209, 875
HgaI GACGC 1 cut(s) 617
Hin1II CATG 3 cut(s) 103, 124, 806
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 4 cut(s) 142, 176, 282, 292
HpaII CCGG 3 cut(s) 154, 209, 875
HphI GGTGA 3 cut(s) 81, 120, 223
Hpy166II GTNNAC 1 cut(s) 846
Hpy188I TCNGA 8 cut(s) 52, 80, 141, 287, 330, 444, 726, 819
Hpy188III TCNNGA 2 cut(s) 163, 396
Hpy8I GTNNAC 1 cut(s) 846
Hpy99I CGWCG 3 cut(s) 410, 564, 736
HpyAV CCTTC 1 cut(s) 743
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 3 cut(s) 28, 562, 657
HpyCH4V TGCA 2 cut(s) 571, 610
HpyF3I CTNAG 5 cut(s) 237, 284, 378, 647, 818
HpySE526I ACGT 3 cut(s) 28, 562, 657
Hsp92II CATG 3 cut(s) 103, 124, 806
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 7 cut(s) 47, 105, 165, 330, 388, 468, 496
LpnPI CCDG 4 cut(s) 167, 222, 557, 637
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 602
MaeII ACGT 3 cut(s) 28, 562, 657
MaeIII GTNAC 4 cut(s) 41, 55, 682, 707
MalI GATC 7 cut(s) 49, 107, 167, 332, 390, 470, 498
MboI GATC 7 cut(s) 47, 105, 165, 330, 388, 468, 496
MboII GAAGA 6 cut(s) 115, 422, 521, 550, 713, 796
MflI RGATCY 4 cut(s) 47, 105, 165, 330
MhlI GDGCHC 1 cut(s) 834
MluCI AATT 2 cut(s) 320, 863
MlyI GAGTC 2 cut(s) 185, 276
MnlI CCTC 8 cut(s) 186, 193, 243, 454, 547, 713, 792, 813
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 1 cut(s) 771
MslI CAYNNNNRTG 1 cut(s) 856
MspA1I CMGCKG 1 cut(s) 766
MspI CCGG 3 cut(s) 154, 209, 875
NdeII GATC 7 cut(s) 47, 105, 165, 330, 388, 468, 496
NlaIII CATG 3 cut(s) 103, 124, 806
NlaIV GGNNCC 3 cut(s) 167, 666, 738
NmeAIII GCCGAG 2 cut(s) 216, 601
NmuCI GTSAC 1 cut(s) 682
NspV TTCGAA 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 142, 292
PinAI ACCGGT 1 cut(s) 208
PleI GAGTC 2 cut(s) 184, 276
PpsI GAGTC 2 cut(s) 184, 276
Psp124BI GAGCTC 1 cut(s) 834
PspFI CCCAGC 1 cut(s) 651
PspN4I GGNNCC 3 cut(s) 167, 666, 738
PspPI GGNCC 2 cut(s) 137, 151
PsuI RGATCY 4 cut(s) 47, 105, 165, 330
RsaI GTAC 3 cut(s) 119, 486, 824
RsaNI GTAC 3 cut(s) 118, 485, 823
RseI CAYNNNNRTG 1 cut(s) 856
Rsr2I CGGWCCG 1 cut(s) 151
RsrII CGGWCCG 1 cut(s) 151
SacI GAGCTC 1 cut(s) 834
SaqAI TTAA 1 cut(s) 771
Sau3AI GATC 7 cut(s) 47, 105, 165, 330, 388, 468, 496
Sau96I GGNCC 2 cut(s) 137, 151
ScaI AGTACT 1 cut(s) 486
SchI GAGTC 2 cut(s) 185, 276
SduI GDGCHC 1 cut(s) 834
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 747
SgrAI CRCCGGYG 1 cut(s) 208
SinI GGWCC 2 cut(s) 137, 151
SmiMI CAYNNNNRTG 1 cut(s) 856
Sse9I AATT 2 cut(s) 320, 863
SsiI CCGC 4 cut(s) 169, 188, 196, 766
SspMI CTAG 1 cut(s) 602
SstI GAGCTC 1 cut(s) 834
StyI CCWWGG 1 cut(s) 500
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 3 cut(s) 31, 565, 660
TaqI TCGA 4 cut(s) 174, 731, 747, 760
TasI AATT 2 cut(s) 320, 863
TatI WGTACW 2 cut(s) 117, 484
TfiI GAWTC 2 cut(s) 142, 292
Tru1I TTAA 1 cut(s) 771
Tru9I TTAA 1 cut(s) 771
TseFI GTSAC 1 cut(s) 682
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 5 cut(s) 116, 422, 683, 688, 857
TspGWI ACGGA 4 cut(s) 164, 169, 749, 846
VpaK11BI GGWCC 2 cut(s) 137, 151
XapI RAATTY 2 cut(s) 320, 863
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 1 cut(s) 602
ZrmI AGTACT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.