Rmu_co8175312.1_g000001

Mitochondrial calcium uniporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8175312.1
OG0012447
Physical Location & Seq
Forward (+)
1 .. 564
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8175312.1_g000001.1.cds

Sequence Viewer

Length: 564 bp
gttctagggcaccaaaccattgttccacctaatgcagcccaggcaaacttccacagggagtatctcacctcatcggagcccgccgagaaaggctttttccggcgattcttccaccactccgccaccaggatccctgagttcctctccctgcctgtcggagagaagctccgtgaaaagatcaaaggtgtgaacaggaacggagatcggctccggctcgccggactcagccctccgccgccggatccggccaccgctgacgagtcgttttacggaatctccgtcagcgatgtgcggaagattatgaggctgtcgcaggtggagaagctgaaggcgaagctgagagaggttccggagagctccgtttcgtattcggagttccgccggatctgcgtggaaggttgcgagagcgaagagcaagcagctgagtttgcgaagcttctcgatgagtccggcaacgtcatcgttctcggaaatgttgtgtttctccggcccgagcaggttgataacattttctctctctttttctttttgttttcaataattatacggggagttccactgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04218 ko04621 map04020 map04218 map04621
Pfam Domains
Protein Families
MCU

Protein Analysis

187

Amino Acids

21.05

Weight (kDa)

7.08

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42610
fragaria_vesca FvH4_2g40260
malus_domestica MD00G1134100.v1.1 MD08G1036100.v1.1 MD15G1032500.v1.1
prunus_persica Prupe.1G383500_v2.0.a1
pyrus_communis pycom08g02890 pycom15g02820
rosa_chinensis RchiOBHm_Chr6g0300501
rosa_laevigata RLG00000011332
rosa_multiflora Rmu_co8175312.1_g000001 Rmu_sc0001476.1_g000012
rosa_roxburghii Rroxscaffold_7G00167730
rosa_rugosa Rorug06G0296500
rosa_samantha Rh6AG409100 Rh6BG416400 Rh6CG424000 Rh6DG409600
rosa_wichuraiana Rw6G035800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 304
Acc36I ACCTGC 2 cut(s) 304, 487
AccB1I GGYRCC 1 cut(s) 9
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 7 cut(s) 81, 120, 233, 236, 252, 292, 379
AclWI GGATC 5 cut(s) 124, 137, 236, 249, 392
AcoI YGGCCR 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 537
AjnI CCWGG 2 cut(s) 39, 125
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 6 cut(s) 166, 325, 337, 357, 422, 436
AluI AGCT 6 cut(s) 166, 325, 337, 357, 422, 436
Alw21I GWGCWC 1 cut(s) 359
AlwI GGATC 5 cut(s) 124, 137, 236, 249, 392
Ama87I CYCGRG 1 cut(s) 491
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 2 cut(s) 246, 488
ApeKI GCWGC 2 cut(s) 35, 419
AspS9I GGNCC 1 cut(s) 489
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 12
BamHI GGATCC 2 cut(s) 129, 241
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 2 cut(s) 81, 359
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 47, 431
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 2 cut(s) 41, 127
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 560
BfuAI ACCTGC 2 cut(s) 304, 487
BisI GCNGC 3 cut(s) 36, 236, 420
BlsI GCNGC 3 cut(s) 37, 237, 421
Bme1390I CCNGG 2 cut(s) 41, 127
BmeT110I CYCGRG 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 6 cut(s) 11, 78, 131, 209, 243, 348
BmrFI CCNGG 2 cut(s) 41, 127
BplI GAGNNNNNCTC 6 cut(s) 128, 160, 150, 182, 192, 224
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 349
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 2 cut(s) 41, 127
BseDI CCNNGG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 4 cut(s) 126, 238, 329, 414
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 2 cut(s) 47, 431
BshFI GGCC 2 cut(s) 248, 490
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 9 cut(s) 100, 211, 219, 239, 245, 350, 382, 450, 487
BslI CCNNNNNNNGG 1 cut(s) 126
BsnI GGCC 2 cut(s) 248, 490
BsoBI CYCGRG 1 cut(s) 491
Bsp1286I GDGCHC 3 cut(s) 12, 81, 359
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 5 cut(s) 129, 177, 202, 241, 384
BspACI CCGC 7 cut(s) 81, 120, 233, 236, 252, 292, 379
BspANI GGCC 2 cut(s) 248, 490
BspCNI CTCAG 4 cut(s) 127, 237, 330, 415
BspEI TCCGGA 1 cut(s) 349
BspLI GGNNCC 6 cut(s) 11, 78, 131, 209, 243, 348
BspMI ACCTGC 2 cut(s) 304, 487
BspPI GGATC 5 cut(s) 124, 137, 236, 249, 392
BspQI GCTCTTC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 5 cut(s) 129, 177, 202, 241, 384
Bst2UI CCWGG 2 cut(s) 41, 127
Bst4CI ACNGT 1 cut(s) 561
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 81, 216, 417
BstDEI CTNAG 4 cut(s) 135, 224, 338, 423
BstKTI GATC 5 cut(s) 132, 180, 205, 244, 387
BstMBI GATC 5 cut(s) 129, 177, 202, 241, 384
BstMWI GCNNNNNNNGC 3 cut(s) 41, 387, 428
BstNI CCWGG 2 cut(s) 41, 127
BstSCI CCNGG 2 cut(s) 39, 125
BstSFI CTRYAG 1 cut(s) 560
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 47, 431
BstX2I RGATCY 3 cut(s) 129, 241, 384
BstYI RGATCY 3 cut(s) 129, 241, 384
BsuRI GGCC 2 cut(s) 248, 490
BtgZI GCGATG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 557
BveI ACCTGC 2 cut(s) 304, 487
Cac8I GCNNGC 3 cut(s) 81, 216, 417
Cfr13I GGNCC 1 cut(s) 489
DdeI CTNAG 4 cut(s) 135, 224, 338, 423
DpnI GATC 5 cut(s) 131, 179, 204, 243, 386
DpnII GATC 5 cut(s) 129, 177, 202, 241, 384
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
EciI GGCGGA 3 cut(s) 109, 222, 368
Ecl136II GAGCTC 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 81, 359
Eco53kI GAGCTC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 39, 125
EcoT38I GRGCYC 2 cut(s) 81, 359
FaiI YATR 2 cut(s) 302, 545
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 36, 236, 420
FriOI GRGCYC 2 cut(s) 81, 359
Fsp4HI GCNGC 3 cut(s) 36, 236, 420
FspBI CTAG 1 cut(s) 5
GluI GCNGC 3 cut(s) 36, 236, 420
HaeIII GGCC 2 cut(s) 248, 490
HapII CCGG 9 cut(s) 100, 211, 219, 239, 245, 350, 382, 450, 487
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 5 cut(s) 105, 222, 260, 273, 446
HpaII CCGG 9 cut(s) 100, 211, 219, 239, 245, 350, 382, 450, 487
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 4 cut(s) 76, 158, 373, 470
Hpy188III TCNNGA 2 cut(s) 350, 440
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 322, 389
HpyCH4III ACNGT 1 cut(s) 561
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 387, 428
HpyF3I CTNAG 4 cut(s) 135, 224, 338, 423
HpySE526I ACGT 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 349
Kzo9I GATC 5 cut(s) 129, 177, 202, 241, 384
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 4 cut(s) 76, 171, 213, 362
Lsp1109I GCAGC 2 cut(s) 47, 431
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 456
MalI GATC 5 cut(s) 131, 179, 204, 243, 386
MboI GATC 5 cut(s) 129, 177, 202, 241, 384
MboII GAAGA 3 cut(s) 100, 307, 422
MflI RGATCY 3 cut(s) 129, 241, 384
MhlI GDGCHC 3 cut(s) 12, 81, 359
MluCI AATT 1 cut(s) 540
MlyI GAGTC 3 cut(s) 216, 269, 455
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 5 cut(s) 79, 152, 240, 297, 337
MroI TCCGGA 1 cut(s) 349
MspA1I CMGCKG 2 cut(s) 254, 422
MspI CCGG 9 cut(s) 100, 211, 219, 239, 245, 350, 382, 450, 487
MspR9I CCNGG 2 cut(s) 41, 127
MvaI CCWGG 2 cut(s) 41, 127
MwoI GCNNNNNNNGC 3 cut(s) 41, 387, 428
NdeII GATC 5 cut(s) 129, 177, 202, 241, 384
NlaIV GGNNCC 6 cut(s) 11, 78, 131, 209, 243, 348
NmeAIII GCCGAG 1 cut(s) 109
PaqCI CACCTGC 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 2 cut(s) 105, 273
PkrI GCNGC 3 cut(s) 37, 237, 421
PleI GAGTC 3 cut(s) 216, 268, 454
PpsI GAGTC 3 cut(s) 216, 268, 454
Psp124BI GAGCTC 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 39, 125
PspGI CCWGG 2 cut(s) 39, 125
PspN4I GGNNCC 6 cut(s) 11, 78, 131, 209, 243, 348
PspPI GGNCC 1 cut(s) 489
PsrI GAACNNNNNNTAC 2 cut(s) 359, 391
PsuI RGATCY 3 cut(s) 129, 241, 384
PvuII CAGCTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 359
SapI GCTCTTC 1 cut(s) 405
SatI GCNGC 3 cut(s) 36, 236, 420
Sau3AI GATC 5 cut(s) 129, 177, 202, 241, 384
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 3 cut(s) 216, 269, 455
ScrFI CCNGG 2 cut(s) 41, 127
SduI GDGCHC 3 cut(s) 12, 81, 359
SfcI CTRYAG 1 cut(s) 560
Sse9I AATT 1 cut(s) 540
SsiI CCGC 7 cut(s) 81, 120, 233, 236, 252, 292, 379
SspMI CTAG 1 cut(s) 5
SstI GAGCTC 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 39, 125
TaaI ACNGT 1 cut(s) 561
TaiI ACGT 1 cut(s) 459
TaqI TCGA 1 cut(s) 441
TasI AATT 1 cut(s) 540
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 2 cut(s) 105, 273
TscAI CASTG 1 cut(s) 564
TseI GCWGC 2 cut(s) 35, 419
TspGWI ACGGA 5 cut(s) 158, 213, 268, 285, 349
TspRI CASTG 1 cut(s) 564
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.