RLG00000011332

Mitochondrial calcium uniporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012447
Physical Location & Seq
Forward (+)
8637420 .. 8639520
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011332

Sequence Viewer

Length: 1053 bp
ATGGCGCTCAGAAAAGCGCTAGCCAAGCGTTCACTCGACGCCGTCAGAGTGACGTCACGGACACCATTCTCCGTAGTCGTTCTAGGGCACCAAACCATTGTTCCACCTAATGCAGCCCAGGCAAACTTCCACAGGGAGTATCTCACCTCATCGGAGCCCGCCGAGAAAGGCTATTTCCGCCGATTCTTCCACCACTCCGCCACCAGGATCCCGGAGTTCCTCTCCCTGCCTGTCGGAGAGAAGCTCCGTGAAAAGATCAAAGGTGTGAACAGGAACGGAGATCGGCTCCGGCTCGCCGGACTCAGCCCTCCACCGCCGGATCCGGCCGCCGCCGCTGACGAGTCGTTTTACGGAATCTCGGTCAGCGATGTGCGGAAGATTATGAGGCTGTCGCAGGTGGAGAAGCTGAAGGCGAAGCTGAGAGAGGTTCCGGAGAGCTCCGTTTCGTATTCGGAGTTCCGCCGGATCTGCGTGGAAGGTTGCGAGAGCGAAGAGCAAGCAGCTGAGTTTGCGAAGCTTCTCGATGAGTCCGGCAACGTCATCGTTCTCGGAAATGTTGTGTTTCTCCGGCCCGAGCAGGTTGCAAAATCAATGGAGAGCATAATTTCTCAAACCATGGGCCTGCCAAACGATCCAAGGAGGAGAGAACTGGACCAGCTAGAGAAGCAAAAGAAGGTAATAAACCAAAGGGCCAGGGCCTTGGTGCAAGGTGAACTCTACGGTGGGCTGGGTTTTATACTACTCCAGACACTTGGTGCCATAAGGCTCACCTTTTGGGAGCTAAGTTGGGATGTGATGGAGCCCATTTGCTTCTTTGTGACCTCCATCTACTTTGCTATGGGCTACGGCTTTTTCCTCAGGACATCCACAGAGCCCACTTTCCAAGGGTTCTTCCAACGCCGTTTTAGGACCAAGCAGCAACGGCTCATGGAGATATATAACTTTGATGTTCGAAAGTACAACCAGCTCCGGAAAGTGTTTTATCCGAATTCCGATCAACTGGCGTCTTTAGATTATGTAGAAACAACCCTTGTTGGTGCTTTACATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04218 ko04621 map04020 map04218 map04621
Pfam Domains
Protein Families
MCU

Protein Analysis

351

Amino Acids

39.98

Weight (kDa)

9.55

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCU PF04678 164 - 323 2e-47 Mitochondrial calcium uniporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42610
fragaria_vesca FvH4_2g40260
malus_domestica MD00G1134100.v1.1 MD08G1036100.v1.1 MD15G1032500.v1.1
prunus_persica Prupe.1G383500_v2.0.a1
pyrus_communis pycom08g02890 pycom15g02820
rosa_chinensis RchiOBHm_Chr6g0300501
rosa_laevigata RLG00000011332
rosa_multiflora Rmu_co8175312.1_g000001 Rmu_sc0001476.1_g000012
rosa_roxburghii Rroxscaffold_7G00167730
rosa_rugosa Rorug06G0296500
rosa_samantha Rh6AG409100 Rh6BG416400 Rh6CG424000 Rh6DG409600
rosa_wichuraiana Rw6G035800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
AatII GACGTC 1 cut(s) 56
Acc36I ACCTGC 2 cut(s) 385, 568
AccB1I GGYRCC 2 cut(s) 87, 755
AccIII TCCGGA 2 cut(s) 430, 969
AciI CCGC 9 cut(s) 159, 178, 198, 314, 327, 330, 333, 373, 460
AclWI GGATC 6 cut(s) 202, 215, 314, 327, 473, 626
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 988
AcuI CTGAAG 1 cut(s) 428
AcyI GRCGYC 3 cut(s) 39, 53, 1004
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 1 cut(s) 959
AfeI AGCGCT 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 204
AjnI CCWGG 3 cut(s) 117, 203, 692
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 9 cut(s) 244, 406, 418, 438, 503, 517, 658, 781, 967
AluI AGCT 9 cut(s) 244, 406, 418, 438, 503, 517, 658, 781, 967
Alw21I GWGCWC 1 cut(s) 440
AlwI GGATC 6 cut(s) 202, 215, 314, 327, 473, 626
Ama87I CYCGRG 1 cut(s) 572
Aor13HI TCCGGA 2 cut(s) 430, 969
Aor51HI AGCGCT 1 cut(s) 18
AoxI GGCC 5 cut(s) 324, 569, 619, 690, 696
ApeKI GCWGC 3 cut(s) 113, 500, 916
ApoI RAATTY 1 cut(s) 988
AspLEI GCGC 2 cut(s) 7, 19
AspS9I GGNCC 6 cut(s) 570, 619, 652, 690, 696, 909
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 136, 722, 760
AsuII TTCGAA 1 cut(s) 952
AsuNHI GCTAGC 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 2 cut(s) 652, 909
AxyI CCTNAGG 1 cut(s) 857
BaeGI GKGCMC 1 cut(s) 90
BamHI GGATCC 2 cut(s) 207, 319
BanI GGYRCC 2 cut(s) 87, 755
BanII GRGCYC 4 cut(s) 159, 440, 804, 876
Bbv12I GWGCWC 1 cut(s) 440
BbvI GCAGC 3 cut(s) 125, 512, 928
BccI CCATC 2 cut(s) 790, 833
BceAI ACGGC 4 cut(s) 26, 862, 885, 938
BcgI CGANNNNNNTGC 4 cut(s) 523, 557, 563, 597
BciT130I CCWGG 3 cut(s) 119, 205, 694
BcnI CCSGG 1 cut(s) 212
BfaI CTAG 3 cut(s) 20, 83, 659
BfoI RGCGCY 2 cut(s) 8, 20
BfuAI ACCTGC 2 cut(s) 385, 568
BisI GCNGC 6 cut(s) 114, 327, 330, 333, 501, 917
BlsI GCNGC 6 cut(s) 115, 328, 331, 334, 502, 918
Bme1390I CCNGG 4 cut(s) 119, 205, 212, 694
Bme18I GGWCC 2 cut(s) 652, 909
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 6 cut(s) 570, 619, 652, 690, 696, 909
BmiI GGNNCC 8 cut(s) 89, 156, 209, 287, 321, 429, 757, 801
BmrFI CCNGG 4 cut(s) 119, 205, 212, 694
BmtI GCTAGC 1 cut(s) 23
BplI GAGNNNNNCTC 6 cut(s) 206, 238, 228, 260, 270, 302
BpmI CTGGAG 1 cut(s) 728
Bpu14I TTCGAA 1 cut(s) 952
BpuMI CCSGG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 1048
BsaHI GRCGYC 3 cut(s) 39, 53, 1004
BsaJI CCNNGG 6 cut(s) 117, 615, 635, 693, 699, 883
BsaWI WCCGGW 2 cut(s) 430, 969
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 2 cut(s) 654, 1005
Bse21I CCTNAGG 1 cut(s) 857
BseAI TCCGGA 2 cut(s) 430, 969
BseBI CCWGG 3 cut(s) 119, 205, 694
BseCI ATCGAT 1 cut(s) 1048
BseDI CCNNGG 6 cut(s) 117, 615, 635, 693, 699, 883
BseGI GGATG 2 cut(s) 796, 863
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 5 cut(s) 22, 316, 410, 495, 871
BseNI ACTGG 2 cut(s) 654, 1005
BseRI GAGGAG 1 cut(s) 655
BseSI GKGCMC 1 cut(s) 90
BseX3I CGGCCG 1 cut(s) 324
BseXI GCAGC 3 cut(s) 125, 512, 928
BseYI CCCAGC 1 cut(s) 727
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 5 cut(s) 326, 571, 621, 692, 698
BshNI GGYRCC 2 cut(s) 87, 755
BshVI ATCGAT 1 cut(s) 1048
BsiEI CGRYCG 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 440
BsiHKCI CYCGRG 1 cut(s) 572
BslI CCNNNNNNNGG 1 cut(s) 204
BsnI GGCC 5 cut(s) 326, 571, 621, 692, 698
BsoBI CYCGRG 1 cut(s) 572
Bsp119I TTCGAA 1 cut(s) 952
Bsp1286I GDGCHC 5 cut(s) 90, 159, 440, 804, 876
Bsp13I TCCGGA 2 cut(s) 430, 969
Bsp143I GATC 7 cut(s) 207, 255, 280, 319, 465, 631, 994
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 9 cut(s) 159, 178, 198, 314, 327, 330, 333, 373, 460
BspANI GGCC 5 cut(s) 326, 571, 621, 692, 698
BspCNI CTCAG 5 cut(s) 21, 315, 411, 496, 870
BspDI ATCGAT 1 cut(s) 1048
BspEI TCCGGA 2 cut(s) 430, 969
BspLI GGNNCC 8 cut(s) 89, 156, 209, 287, 321, 429, 757, 801
BspMI ACCTGC 2 cut(s) 385, 568
BspOI GCTAGC 1 cut(s) 23
BspPI GGATC 6 cut(s) 202, 215, 314, 327, 473, 626
BspQI GCTCTTC 1 cut(s) 486
BspT104I TTCGAA 1 cut(s) 952
BspT107I GGYRCC 2 cut(s) 87, 755
BsrI ACTGG 2 cut(s) 654, 1005
BssECI CCNNGG 6 cut(s) 117, 615, 635, 693, 699, 883
BssMI GATC 7 cut(s) 207, 255, 280, 319, 465, 631, 994
BssNI GRCGYC 3 cut(s) 39, 53, 1004
BssT1I CCWWGG 4 cut(s) 615, 635, 699, 883
Bst2UI CCWGG 3 cut(s) 119, 205, 694
Bst4CI ACNGT 1 cut(s) 722
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 3 cut(s) 39, 53, 1004
BstBI TTCGAA 1 cut(s) 952
BstC8I GCNNGC 5 cut(s) 21, 159, 294, 498, 623
BstDEI CTNAG 6 cut(s) 8, 302, 419, 504, 782, 857
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 2 cut(s) 796, 863
BstH2I RGCGCY 2 cut(s) 8, 20
BstHHI GCGC 2 cut(s) 7, 19
BstKTI GATC 7 cut(s) 210, 258, 283, 322, 468, 634, 997
BstMBI GATC 7 cut(s) 207, 255, 280, 319, 465, 631, 994
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 8 cut(s) 25, 119, 177, 332, 468, 509, 664, 922
BstNI CCWGG 3 cut(s) 119, 205, 694
BstSCI CCNGG 4 cut(s) 117, 203, 210, 692
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 3 cut(s) 125, 512, 928
BstX2I RGATCY 3 cut(s) 207, 319, 465
BstXI CCANNNNNNTGG 2 cut(s) 700, 752
BstYI RGATCY 3 cut(s) 207, 319, 465
BstZI CGGCCG 1 cut(s) 324
Bsu15I ATCGAT 1 cut(s) 1048
Bsu36I CCTNAGG 1 cut(s) 857
BsuRI GGCC 5 cut(s) 326, 571, 621, 692, 698
BsuTUI ATCGAT 1 cut(s) 1048
BtgI CCRYGG 1 cut(s) 615
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 796, 863
BveI ACCTGC 2 cut(s) 385, 568
Cac8I GCNNGC 5 cut(s) 21, 159, 294, 498, 623
CfoI GCGC 2 cut(s) 7, 19
Cfr13I GGNCC 6 cut(s) 570, 619, 652, 690, 696, 909
ClaI ATCGAT 1 cut(s) 1048
CseI GACGC 2 cut(s) 47, 993
Csp6I GTAC 1 cut(s) 958
CviAII CATG 2 cut(s) 616, 928
CviQI GTAC 1 cut(s) 958
DdeI CTNAG 6 cut(s) 8, 302, 419, 504, 782, 857
DpnI GATC 7 cut(s) 209, 257, 282, 321, 467, 633, 996
DpnII GATC 7 cut(s) 207, 255, 280, 319, 465, 631, 994
DraIII CACNNNGTG 1 cut(s) 755
EaeI YGGCCR 1 cut(s) 324
EagI CGGCCG 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
EciI GGCGGA 3 cut(s) 167, 187, 449
Ecl136II GAGCTC 1 cut(s) 438
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 4 cut(s) 615, 635, 699, 883
Eco24I GRGCYC 4 cut(s) 159, 440, 804, 876
Eco47I GGWCC 2 cut(s) 652, 909
Eco47III AGCGCT 1 cut(s) 18
Eco52I CGGCCG 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 438
Eco57I CTGAAG 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 857
Eco88I CYCGRG 1 cut(s) 572
EcoICRI GAGCTC 1 cut(s) 438
EcoO109I RGGNCCY 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 988
EcoRII CCWGG 3 cut(s) 117, 203, 692
EcoT14I CCWWGG 4 cut(s) 615, 635, 699, 883
EcoT38I GRGCYC 4 cut(s) 159, 440, 804, 876
ErhI CCWWGG 4 cut(s) 615, 635, 699, 883
FaeI CATG 2 cut(s) 619, 931
FatI CATG 2 cut(s) 615, 927
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 6 cut(s) 114, 327, 330, 333, 501, 917
FokI GGATG 2 cut(s) 803, 850
FriOI GRGCYC 4 cut(s) 159, 440, 804, 876
Fsp4HI GCNGC 6 cut(s) 114, 327, 330, 333, 501, 917
FspBI CTAG 3 cut(s) 20, 83, 659
GlaI GCGC 2 cut(s) 6, 18
GluI GCNGC 6 cut(s) 114, 327, 330, 333, 501, 917
GsaI CCCAGC 1 cut(s) 731
GsuI CTGGAG 1 cut(s) 728
HaeII RGCGCY 2 cut(s) 8, 20
HaeIII GGCC 5 cut(s) 326, 571, 621, 692, 698
HgaI GACGC 2 cut(s) 47, 993
HhaI GCGC 2 cut(s) 7, 19
Hin1I GRCGYC 3 cut(s) 39, 53, 1004
Hin1II CATG 2 cut(s) 619, 931
Hin6I GCGC 2 cut(s) 5, 17
HinP1I GCGC 2 cut(s) 5, 17
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 5 cut(s) 183, 300, 341, 354, 527
HphI GGTGA 3 cut(s) 136, 722, 760
Hpy166II GTNNAC 3 cut(s) 32, 268, 713
Hpy188I TCNGA 8 cut(s) 11, 47, 154, 236, 454, 551, 987, 994
Hpy188III TCNNGA 5 cut(s) 431, 521, 745, 859, 970
Hpy8I GTNNAC 3 cut(s) 32, 268, 713
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 403, 470, 667
HpyCH4III ACNGT 1 cut(s) 722
HpyCH4IV ACGT 2 cut(s) 53, 537
HpyCH4V TGCA 3 cut(s) 113, 584, 706
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 119, 177, 332, 468, 509, 664, 922
HpyF3I CTNAG 6 cut(s) 8, 302, 419, 504, 782, 857
HpySE526I ACGT 2 cut(s) 53, 537
Hsp92I GRCGYC 3 cut(s) 39, 53, 1004
Hsp92II CATG 2 cut(s) 619, 931
HspAI GCGC 2 cut(s) 5, 17
Kpn2I TCCGGA 2 cut(s) 430, 969
Kzo9I GATC 7 cut(s) 207, 255, 280, 319, 465, 631, 994
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 7 cut(s) 154, 249, 291, 443, 778, 799, 972
Lsp1109I GCAGC 3 cut(s) 125, 512, 928
MaeI CTAG 3 cut(s) 20, 83, 659
MaeII ACGT 2 cut(s) 53, 537
MaeIII GTNAC 3 cut(s) 49, 54, 817
MalI GATC 7 cut(s) 209, 257, 282, 321, 467, 633, 996
MboI GATC 7 cut(s) 207, 255, 280, 319, 465, 631, 994
MboII GAAGA 4 cut(s) 178, 388, 503, 883
MflI RGATCY 3 cut(s) 207, 319, 465
MhlI GDGCHC 5 cut(s) 90, 159, 440, 804, 876
MluCI AATT 2 cut(s) 603, 988
MlyI GAGTC 3 cut(s) 294, 350, 536
MmeI TCCRAC 2 cut(s) 214, 919
MnlI CCTC 8 cut(s) 157, 230, 318, 378, 418, 633, 832, 866
MroI TCCGGA 2 cut(s) 430, 969
MspA1I CMGCKG 2 cut(s) 335, 503
MspR9I CCNGG 4 cut(s) 119, 205, 212, 694
MvaI CCWGG 3 cut(s) 119, 205, 694
MwoI GCNNNNNNNGC 8 cut(s) 25, 119, 177, 332, 468, 509, 664, 922
NciI CCSGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 615
NdeII GATC 7 cut(s) 207, 255, 280, 319, 465, 631, 994
NheI GCTAGC 1 cut(s) 19
NlaIII CATG 2 cut(s) 619, 931
NlaIV GGNNCC 8 cut(s) 89, 156, 209, 287, 321, 429, 757, 801
NmeAIII GCCGAG 1 cut(s) 187
NmuCI GTSAC 3 cut(s) 49, 54, 817
NspV TTCGAA 1 cut(s) 952
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 183, 354
PflFI GACNNNGTC 1 cut(s) 41
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 6 cut(s) 115, 328, 331, 334, 502, 918
PleI GAGTC 3 cut(s) 294, 349, 535
PpsI GAGTC 3 cut(s) 294, 349, 535
Psp124BI GAGCTC 1 cut(s) 440
Psp6I CCWGG 3 cut(s) 117, 203, 692
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 3 cut(s) 117, 203, 692
PspN4I GGNNCC 8 cut(s) 89, 156, 209, 287, 321, 429, 757, 801
PspPI GGNCC 6 cut(s) 570, 619, 652, 690, 696, 909
PsrI GAACNNNNNNTAC 2 cut(s) 440, 472
PsuI RGATCY 3 cut(s) 207, 319, 465
PsyI GACNNNGTC 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 1 cut(s) 959
RsaNI GTAC 1 cut(s) 958
SacI GAGCTC 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 486
SatI GCNGC 6 cut(s) 114, 327, 330, 333, 501, 917
Sau3AI GATC 7 cut(s) 207, 255, 280, 319, 465, 631, 994
Sau96I GGNCC 6 cut(s) 570, 619, 652, 690, 696, 909
SchI GAGTC 3 cut(s) 294, 350, 536
ScrFI CCNGG 4 cut(s) 119, 205, 212, 694
SduI GDGCHC 5 cut(s) 90, 159, 440, 804, 876
SfuI TTCGAA 1 cut(s) 952
SinI GGWCC 2 cut(s) 652, 909
Sse9I AATT 2 cut(s) 603, 988
SsiI CCGC 9 cut(s) 159, 178, 198, 314, 327, 330, 333, 373, 460
SspMI CTAG 3 cut(s) 20, 83, 659
SstI GAGCTC 1 cut(s) 440
StyD4I CCNGG 4 cut(s) 117, 203, 210, 692
StyI CCWWGG 4 cut(s) 615, 635, 699, 883
TaaI ACNGT 1 cut(s) 722
TaiI ACGT 2 cut(s) 56, 540
TaqI TCGA 4 cut(s) 36, 522, 952, 1048
TaqII GACCGA 1 cut(s) 349
TasI AATT 2 cut(s) 603, 988
TatI WGTACW 1 cut(s) 957
TauI GCSGC 3 cut(s) 329, 332, 335
TfiI GAWTC 2 cut(s) 183, 354
TseFI GTSAC 3 cut(s) 49, 54, 817
TseI GCWGC 3 cut(s) 113, 500, 916
Tsp45I GTSAC 3 cut(s) 49, 54, 817
TspGWI ACGGA 6 cut(s) 61, 73, 236, 291, 366, 430
Tth111I GACNNNGTC 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 652, 909
XapI RAATTY 1 cut(s) 988
XspI CTAG 3 cut(s) 20, 83, 659
ZraI GACGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.