Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012335

Physical Location & Seq

Genomic Coordinates Reverse (-)

17142816 .. 17144672

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAAACTAATCTACAACAGGTGAAGAACAGTTCTCAAACTTTTTCTGAAAAGCAAAACCCTAAACAAGAAGCTTCACCTTCACCAATATCATCCACTTGTTCTTCTCCTTCTCATGACTTCTCTTTCACTATCTCTCTCCAGCCTCTCTCTTCTTCCTCAAAACACATCAGTCCTACTCTTAGAAGCCCATCCAAAACGACATCGTCTTATCAACAAACCGATCCTTTCGCCGTCGACTTATCCCCCGCCGATGAAATCTTCTTCCACGGCCACCTTCTTCCTCTCCATCTCCTCTCTCACCTCCCTGTCTCTCCCCGAACTTCCACAGGCTCGTATAATGACGGATTTACCCTCCCCGTCAAAGATATATTACCCGACCAGCCCACAAACAACAACAACAACACTGAAAACGCTATCACCAACATAAGTACCGAGGCAAAGGACGACAACACCGAAGACAAAGCAGAGGGCGAGATTCGGGTAAAAACCAAACCCATTAAGTCATTTTCTCTCTTTGGTTTATCAAAATGGAGAAAGGGTTTTGAAAGCAACGAGCGAGAACAAGAACAACAACAACAGAAGATCAAGAAACCTATGAGCTTAGACCTAAGTCACGCCGTCAAGAAGTACATAAGGATGTTGTTTCAGAAAAGAGGAAACGGCACGCAGTTTTGGAACAGAAGACAGACTTCTTCTTACTCTTTCTCTTCCTCTCTTATGGGTCCAAACGGAAACAGCAAAACAATGATTAATGGATCTTACAACAAGAGAGATCTCATAAGAGGAAGGAGAGGTGAATTGTTCTCGGCTCCGGCGTCGATGAGAACATCTCCGACTAATAGTGGCCATCTTCGTGTGTCTACGGCCGGACTATCGTCAAGCTCGGGGTCCACGTCATCATCGTCAAGTGATAGTACCATGGAAGAGTTACAAGCTGCGATTCAAGCAGCTATTGCTCATTGCAAGAACTCAAGCGCCGTTGATCGTGATGATAAGGTTAAGGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006469 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010422 GO:0010423 GO:0010563 GO:0010605 GO:0010817 GO:0010894 GO:0016020 GO:0019207 GO:0019210 GO:0019216 GO:0019218 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032350 GO:0032351 GO:0032353 GO:0033673 GO:0042325 GO:0042326 GO:0043086 GO:0043549 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045833 GO:0045859 GO:0045936 GO:0045939 GO:0046885 GO:0046890 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050810 GO:0051055 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071944 GO:0080090 GO:0090030 GO:0090032 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

37.1

Weight (kDa)

9.28

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42750
fragaria_vesca	FvH4_2g34560
malus_domestica	MD08G1102600.v1.1 MD15G1084100.v1.1
prunus_persica	Prupe.1G437500_v2.0.a1
pyrus_communis	pycom08g08410 pycom15g07930
rosa_chinensis	RchiOBHm_Chr6g0307601 RchiOBHm_Chr6g0307761
rosa_laevigata	RLG00000010702
rosa_multiflora	Rmu_co8485591.1_g000001 Rmu_sc0000031.1_g000029
rosa_roxburghii	Rroxscaffold_7G00160910
rosa_rugosa	Rorug06G0360600
rosa_samantha	Rh6AG469700 Rh6BG480200 Rh6CG485900 Rh6DG472400
rosa_wichuraiana	Rw6G041010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	237, 863
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	2 cut(s)	218, 766
AcoI	YGGCCR	3 cut(s)	271, 847, 867
AcyI	GRCGYC	1 cut(s)	818
AfaI	GTAC	3 cut(s)	433, 632, 919
AgsI	TTSAA	2 cut(s)	548, 947
AjiI	CACGTC	1 cut(s)	897
AluBI	AGCT	5 cut(s)	74, 603, 885, 938, 953
AluI	AGCT	5 cut(s)	74, 603, 885, 938, 953
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	2 cut(s)	218, 766
Ama87I	CYCGRG	1 cut(s)	886
AoxI	GGCC	3 cut(s)	271, 847, 867
ApeKI	GCWGC	2 cut(s)	938, 950
AseI	ATTAAT	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	980
AspS9I	GGNCC	2 cut(s)	725, 891
AsuHPI	GGTGA	6 cut(s)	34, 69, 75, 293, 412, 809
AvaI	CYCGRG	1 cut(s)	886
AvaII	GGWCC	2 cut(s)	725, 891
BaeI	ACNNNNGTAYC	2 cut(s)	415, 448
BalI	TGGCCA	1 cut(s)	849
BbsI	GAAGAC	2 cut(s)	465, 691
BbvI	GCAGC	2 cut(s)	925, 962
BccI	CCATC	3 cut(s)	199, 297, 858
BceAI	ACGGC	6 cut(s)	218, 286, 605, 679, 882, 965
BcoDI	GTCTC	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	981
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	2 cut(s)	939, 951
BlsI	GCNGC	2 cut(s)	940, 952
Bme18I	GGWCC	2 cut(s)	725, 891
BmeT110I	CYCGRG	1 cut(s)	886
BmgBI	CACGTC	1 cut(s)	897
BmgT120I	GGNCC	2 cut(s)	725, 891
BmiI	GGNNCC	3 cut(s)	726, 813, 892
BoxI	GACNNNNGTC	2 cut(s)	612, 877
BpiI	GAAGAC	2 cut(s)	465, 691
BplI	GAGNNNNNCTC	2 cut(s)	817, 849
BpmI	CTGGAG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	958
BsaHI	GRCGYC	1 cut(s)	818
BsaJI	CCNNGG	3 cut(s)	268, 435, 921
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse3DI	GCAATG	1 cut(s)	961
BseDI	CCNNGG	3 cut(s)	268, 435, 921
BseGI	GGATG	3 cut(s)	92, 191, 645
BseMI	GCAATG	1 cut(s)	961
BseRI	GAGGAG	1 cut(s)	284
BseX3I	CGGCCG	1 cut(s)	867
BseXI	GCAGC	2 cut(s)	925, 962
Bsh1285I	CGRYCG	1 cut(s)	870
BshFI	GGCC	3 cut(s)	273, 849, 869
BsiEI	CGRYCG	1 cut(s)	870
BsiHKCI	CYCGRG	1 cut(s)	886
BsiSI	CCGG	2 cut(s)	815, 870
BsmAI	GTCTC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	273, 849, 869
BsoBI	CYCGRG	1 cut(s)	886
Bsp143I	GATC	5 cut(s)	223, 585, 758, 775, 985
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	3 cut(s)	273, 849, 869
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	3 cut(s)	726, 813, 892
BspPI	GGATC	2 cut(s)	218, 766
BsrDI	GCAATG	1 cut(s)	961
BssECI	CCNNGG	3 cut(s)	268, 435, 921
BssMI	GATC	5 cut(s)	223, 585, 758, 775, 985
BssNI	GRCGYC	1 cut(s)	818
BssT1I	CCWWGG	1 cut(s)	921
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	3 cut(s)	157, 715, 921
BstACI	GRCGYC	1 cut(s)	818
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	3 cut(s)	182, 604, 611
BstDSI	CCRYGG	2 cut(s)	268, 921
BstF5I	GGATG	3 cut(s)	92, 191, 645
BstH2I	RGCGCY	1 cut(s)	981
BstHHI	GCGC	1 cut(s)	980
BstKTI	GATC	5 cut(s)	226, 588, 761, 778, 988
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	5 cut(s)	223, 585, 758, 775, 985
BstMCI	CGRYCG	1 cut(s)	870
BstMWI	GCNNNNNNNGC	2 cut(s)	947, 956
BstPAI	GACNNNNGTC	2 cut(s)	612, 877
BstV1I	GCAGC	2 cut(s)	925, 962
BstV2I	GAAGAC	2 cut(s)	465, 691
BstX2I	RGATCY	2 cut(s)	758, 775
BstYI	RGATCY	2 cut(s)	758, 775
BstZI	CGGCCG	1 cut(s)	867
BsuRI	GGCC	3 cut(s)	273, 849, 869
BtgI	CCRYGG	2 cut(s)	268, 921
BtrI	CACGTC	1 cut(s)	897
BtsCI	GGATG	3 cut(s)	92, 191, 645
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	668
CciI	TCATGA	1 cut(s)	115
CfoI	GCGC	1 cut(s)	980
Cfr13I	GGNCC	2 cut(s)	725, 891
CseI	GACGC	1 cut(s)	807
Csp6I	GTAC	3 cut(s)	432, 631, 918
CviAII	CATG	2 cut(s)	116, 922
CviQI	GTAC	3 cut(s)	432, 631, 918
DdeI	CTNAG	3 cut(s)	182, 604, 611
DpnI	GATC	5 cut(s)	225, 587, 760, 777, 987
DpnII	GATC	5 cut(s)	223, 585, 758, 775, 985
EaeI	YGGCCR	3 cut(s)	271, 847, 867
EagI	CGGCCG	1 cut(s)	867
Eam1104I	CTCTTC	3 cut(s)	157, 715, 921
EarI	CTCTTC	3 cut(s)	157, 715, 921
EclXI	CGGCCG	1 cut(s)	867
Eco130I	CCWWGG	1 cut(s)	921
Eco47I	GGWCC	2 cut(s)	725, 891
Eco52I	CGGCCG	1 cut(s)	867
Eco88I	CYCGRG	1 cut(s)	886
EcoT14I	CCWWGG	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	2 cut(s)	119, 925
FaiI	YATR	9 cut(s)	117, 339, 371, 428, 599, 635, 722, 782, 923
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FatI	CATG	2 cut(s)	115, 921
FauI	CCCGC	1 cut(s)	256
FblI	GTMKAC	2 cut(s)	237, 863
Fnu4HI	GCNGC	2 cut(s)	939, 951
FokI	GGATG	3 cut(s)	79, 178, 652
Fsp4HI	GCNGC	2 cut(s)	939, 951
GlaI	GCGC	1 cut(s)	979
GluI	GCNGC	2 cut(s)	939, 951
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	981
HaeIII	GGCC	3 cut(s)	273, 849, 869
HapII	CCGG	2 cut(s)	815, 870
HgaI	GACGC	1 cut(s)	807
HhaI	GCGC	1 cut(s)	980
Hin1I	GRCGYC	1 cut(s)	818
Hin1II	CATG	2 cut(s)	119, 925
Hin6I	GCGC	1 cut(s)	978
HinP1I	GCGC	1 cut(s)	978
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	3 cut(s)	478, 943, 1007
HpaII	CCGG	2 cut(s)	815, 870
HphI	GGTGA	6 cut(s)	34, 69, 75, 293, 412, 809
Hpy166II	GTNNAC	3 cut(s)	238, 864, 894
Hpy188I	TCNGA	3 cut(s)	49, 651, 837
Hpy188III	TCNNGA	5 cut(s)	116, 589, 625, 989, 1011
Hpy8I	GTNNAC	3 cut(s)	238, 864, 894
Hpy99I	CGWCG	2 cut(s)	239, 823
HpyAV	CCTTC	4 cut(s)	90, 120, 287, 783
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	1 cut(s)	966
HpyF10VI	GCNNNNNNNGC	2 cut(s)	947, 956
HpyF3I	CTNAG	3 cut(s)	182, 604, 611
HpySE526I	ACGT	1 cut(s)	896
Hsp92I	GRCGYC	1 cut(s)	818
Hsp92II	CATG	2 cut(s)	119, 925
HspAI	GCGC	1 cut(s)	978
Kzo9I	GATC	5 cut(s)	223, 585, 758, 775, 985
LmnI	GCTCC	1 cut(s)	817
LpnPI	CCDG	7 cut(s)	5, 155, 315, 321, 395, 828, 883
Lsp1109I	GCAGC	2 cut(s)	925, 962
MaeII	ACGT	1 cut(s)	896
MaeIII	GTNAC	2 cut(s)	614, 930
MalI	GATC	5 cut(s)	225, 587, 760, 777, 987
MboI	GATC	5 cut(s)	223, 585, 758, 775, 985
MflI	RGATCY	2 cut(s)	758, 775
MlsI	TGGCCA	1 cut(s)	849
MluCI	AATT	1 cut(s)	800
MluNI	TGGCCA	1 cut(s)	849
MmeI	TCCRAC	1 cut(s)	860
Mox20I	TGGCCA	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	849
MseI	TTAA	3 cut(s)	501, 753, 1002
MslI	CAYNNNNRTG	2 cut(s)	638, 855
Msp20I	TGGCCA	1 cut(s)	849
MspI	CCGG	2 cut(s)	815, 870
MwoI	GCNNNNNNNGC	2 cut(s)	947, 956
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	5 cut(s)	223, 585, 758, 775, 985
NlaIII	CATG	2 cut(s)	119, 925
NlaIV	GGNNCC	3 cut(s)	726, 813, 892
NmeAIII	GCCGAG	1 cut(s)	788
NmuCI	GTSAC	1 cut(s)	614
PagI	TCATGA	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	4 cut(s)	453, 815, 893, 902
PfeI	GAWTC	3 cut(s)	478, 943, 1007
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	940, 952
PshAI	GACNNNNGTC	2 cut(s)	612, 877
PshBI	ATTAAT	1 cut(s)	753
PspN4I	GGNNCC	3 cut(s)	726, 813, 892
PspPI	GGNCC	2 cut(s)	725, 891
PsuI	RGATCY	2 cut(s)	758, 775
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	3 cut(s)	433, 632, 919
RsaNI	GTAC	3 cut(s)	432, 631, 918
RseI	CAYNNNNRTG	2 cut(s)	638, 855
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	501, 753, 1002
SatI	GCNGC	2 cut(s)	939, 951
Sau3AI	GATC	5 cut(s)	223, 585, 758, 775, 985
Sau96I	GGNCC	2 cut(s)	725, 891
SinI	GGWCC	2 cut(s)	725, 891
SmiMI	CAYNNNNRTG	2 cut(s)	638, 855
SmlI	CTYRAG	1 cut(s)	973
SmoI	CTYRAG	1 cut(s)	973
Sse9I	AATT	1 cut(s)	800
SsiI	CCGC	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	899
TaqI	TCGA	2 cut(s)	237, 821
TasI	AATT	1 cut(s)	800
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	3 cut(s)	478, 943, 1007
Tru1I	TTAA	3 cut(s)	501, 753, 1002
Tru9I	TTAA	3 cut(s)	501, 753, 1002
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	2 cut(s)	938, 950
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	2 cut(s)	360, 747
TspRI	CASTG	1 cut(s)	412
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	725, 891
VspI	ATTAAT	1 cut(s)	753
XmiI	GTMKAC	2 cut(s)	237, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.